F integration test baltasar

Summary

See #11. An integration test for a complex use case of the crawler. It was used during a live presentation of caosdb and the new crawler. The presentation covered a use case for inserting simulations with cardiac models by Baltasar Rüchardt.

Focus

Have a look at the assertions in the test file, please. Is there anything missing?

Test Environment

• A: Start an empty docker container and run pytest use_case_simple_presentation.py. This will interactively register the currently running docker container with this test.
• B: Use a previously registered docker container and run pytest use_case_simple_presentation.py.

Check List for the Author

Please, prepare your MR for a review. Be sure to write a summary and a focus and create gitlab comments for the reviewer. They should guide the reviewer through the changes, explain your changes and also point out open questions. For further good practices have a look at our review guidelines

• All automated tests pass
• Reference related issues
• Up-to-date CHANGELOG.md (or not necessary)
• Annotations in code (Gitlab comments)
  • Intent of new code
  • Problems with old code
  • Why this implementation?

Check List for the Reviewer

• I understand the intent of this MR
• All automated tests pass
• Up-to-date CHANGELOG.md (or not necessary)
• The test environment setup works and the intended behavior is reproducible in the test environment
• In-code documentation and comments are up-to-date.
• Check: Are there specifications? Are they satisfied?

For further good practices have a look at our review guidelines.

integrationtests/use_case_cardiac_simulation/crawl_data.sh

+#!/bin/bash
+# Run the crawler2.0 to test the data structure
+# A. Schlemmer, 03/2022
+
+crawler2.0 --debug --load-identifiables="identifiables.yml" -s --provenance=provenance.yml simulation_cfood_baltasar.yml ../../extroot/