F integration test baltasar

Summary

See #11. An integration test for a complex use case of the crawler. It was used during a live presentation of caosdb and the new crawler. The presentation covered a use case for inserting simulations with cardiac models by Baltasar Rüchardt.

Focus

Have a look at the assertions in the test file, please. Is there anything missing?

Test Environment

• A: Start an empty docker container and run pytest use_case_simple_presentation.py. This will interactively register the currently running docker container with this test.
• B: Use a previously registered docker container and run pytest use_case_simple_presentation.py.

Check List for the Author

Please, prepare your MR for a review. Be sure to write a summary and a focus and create gitlab comments for the reviewer. They should guide the reviewer through the changes, explain your changes and also point out open questions. For further good practices have a look at our review guidelines

• All automated tests pass
• Reference related issues
• Up-to-date CHANGELOG.md (or not necessary)
• Annotations in code (Gitlab comments)
  • Intent of new code
  • Problems with old code
  • Why this implementation?

Check List for the Reviewer

• I understand the intent of this MR
• All automated tests pass
• Up-to-date CHANGELOG.md (or not necessary)
• The test environment setup works and the intended behavior is reproducible in the test environment
• In-code documentation and comments are up-to-date.
• Check: Are there specifications? Are they satisfied?

For further good practices have a look at our review guidelines.

assigned to @salexan

added 1 commit

• 4300797c - TST: added extroot files for the integratin test for cardiac simulations

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@henrik @florian I am creating a first comprehensive integration test for a complete crawler here.

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• 9e2242d3 - add yamlrecordconverter
• f7dc96c8 - Merge branch 'dev' into f-YamlFileCaosDBRecord
• d25dcd85 - Merge branch 'f-YamlFileCaosDBRecord' into f-integration-test-baltasar
• 7d895edf - TST: created pytest file
• 49149274 - TST: removed script files that are not needed for the integration test

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• 57061789 - TST: adapted test cfood to the new format
• a6197210 - TST: use crawler main function directly

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• 451678e6 - MAINT: allow using the crawler main function directly from the code
• 0d1ee59e - FIX: list elements were not treated correctly in dict list element converter

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mentioned in merge request !13 (merged)

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• 0d1ee59e...54bf5162 - 2 commits from branch dev
• bbeef407 - Merge branch 'dev' into f-integration-test-baltasar

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requested review from @henrik and @florian

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• bbeef407...b325d6fb - 2 commits from branch dev
• 0c62b428 - Merge branch 'dev' into f-integration-test-baltasar

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added 1 commit

• f8c5cdeb - MAINT: update of profile and copyright notice

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marked the checklist item All automated tests pass as completed

marked the checklist item Reference related issues as completed

marked the checklist item Up-to-date CHANGELOG.md (or not necessary) as completed

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• 1578a58f - FIX: adapted test file to change in profile yml

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added 1 commit

• cd8498fc - TST: completed test for use case cardiac simulation

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mentioned in issue #11

marked this merge request as ready

mentioned in issue #19 (closed)

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• cd8498fc...acc3b20f - 54 commits from branch dev
• fa636b86 - Merge branch 'dev' into f-integration-test-baltasar

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