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F awi sams

Merged F awi sams
f-awi-sams into main
Merged Florian Spreckelsen requested to merge f-awi-sams into main

Summary

For #1 (closed). Removes the dependencies on the specifics of the GEOMAR data model and makes things more configurable.

Focus

A lot of functionality is moved into small Python modules in scripting/bin/sample_helpers. They should define a reasonable default behavior for the datamodel in models_and_helper_scripts/sample-management-datamodel.yml and the AWI SAMS datamodel, and should be overwritten by files of the same name in a server profile's custom directory for customization.

Test Environment

So far, only manual testing.

Do round trips for:

  • Container registration, export, update
  • Sample registration, export, update

Check List for the Author

Please, prepare your MR for a review. Be sure to write a summary and a focus and create gitlab comments for the reviewer. They should guide the reviewer through the changes, explain your changes and also point out open questions. For further good practices have a look at our review guidelines

  • All automated tests pass
  • Reference related issues
  • Up-to-date CHANGELOG.md (or not necessary)
  • Up-to-date JSON schema (or not necessary)
  • Appropriate user and developer documentation (or not necessary)
    • How do I use the software? Assume "stupid" users.
    • How do I develop or debug the software? Assume novice developers.
  • Annotations in code (Gitlab comments)
    • Intent of new code
    • Problems with old code
    • Why this implementation?

Check List for the Reviewer

  • I understand the intent of this MR
  • All automated tests pass
  • Up-to-date CHANGELOG.md (or not necessary)
  • Appropriate user and developer documentation (or not necessary)
  • The test environment setup works and the intended behavior is reproducible in the test environment
  • In-code documentation and comments are up-to-date.
  • Check: Are there specifications? Are they satisfied?

For further good practices have a look at our review guidelines.

Edited by Henrik tom Wörden

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