Deploy ruqad in docker

Summary

A big merge request for everything. Maybe !3 (merged) should be merged first?

Focus

Can the Ruqad monitor be run in Docker?

Test Environment

Check the readme files.

Check List for the Author

Please, prepare your MR for a review. Be sure to write a summary and a focus and create gitlab comments for the reviewer. They should guide the reviewer through the changes, explain your changes and also point out open questions. For further good practices have a look at our review guidelines

• All automated tests pass
• Reference related issues caosdb/customers/f-fit/management#18
• Up-to-date CHANGELOG.md (or not necessary)
• Up-to-date JSON schema (or not necessary)
• Appropriate user and developer documentation (or not necessary)
  • How do I use the software? Assume "stupid" users.
  • How do I develop or debug the software? Assume novice developers.
• Annotations in code (Gitlab comments)
  • Intent of new code
  • Problems with old code
  • Why this implementation?

Check List for the Reviewer

• I understand the intent of this MR
• All automated tests pass
• Up-to-date CHANGELOG.md (or not necessary)
• Appropriate user and developer documentation (or not necessary)
• The test environment setup works and the intended behavior is reproducible in the test environment
• In-code documentation and comments are up-to-date.
• Check: Are there specifications? Are they satisfied?

For further good practices have a look at our review guidelines.

.docker/Dockerfile

@@ -4,34 +4,31 @@ RUN apt-get update && \
     curl \
     git \
     openjdk-17-jdk-headless \
-    python3-autopep8 \
     python3-pip \
-    python3-pytest \
-    python3-sphinx \
     -y
-RUN pip3 install --break-system-packages pylint recommonmark sphinx-rtd-theme tox
+
 COPY .docker/wait-for-it.sh /wait-for-it.sh
 ARG PYLIB
+ARG ADVANCED
+# Version files
 ADD https://gitlab.indiscale.com/api/v4/projects/97/repository/commits/${PYLIB} \
     pylib_version.json
-RUN git clone https://gitlab.indiscale.com/caosdb/src/caosdb-pylib.git && \
-    cd caosdb-pylib && git checkout ${PYLIB} && pip3 install --break-system-packages .
-ARG ADVANCED
 ADD https://gitlab.indiscale.com/api/v4/projects/104/repository/commits/${ADVANCED} \
-    advanced_version.json
-RUN git clone https://gitlab.indiscale.com/caosdb/src/caosdb-advanced-user-tools.git && \
-    cd caosdb-advanced-user-tools && git checkout ${ADVANCED} && pip3 install --break-system-packages .[h5-crawler]
-COPY . /git
+  advanced_version.json
+# Install pylib and advanced user tools
+RUN pip install --break-system-packages -U \
+  git+https://gitlab.indiscale.com/caosdb/src/caosdb-pylib.git@${PYLIB} \
+  git+https://gitlab.indiscale.com/caosdb/src/caosdb-advanced-user-tools.git@${ADVANCED}
 
-# Delete .git because it is huge.
+# Install Ruqad
+COPY . /git
 RUN rm -r /git/.git
-
-RUN cd /git/ && pip3 install --break-system-packages .
+RUN cd /git/ && pip3 install --break-system-packages .[all]
 
 WORKDIR /git/integrationtests
 # wait for server,
-CMD /wait-for-it.sh caosdb-server:10443 -t 500 -- \
+CMD /wait-for-it.sh caosdb-server:10443 -t 120 --strict -- \
     # ... install pycaosdb.ini the server-side scripts
-    cp /git/.docker/sss_pycaosdb.ini /scripting/home/.pycaosdb.ini && \
+    cp /git/.docker/sss_pylinkahead.ini /scripting/home/.pylinkahead.ini && \
     # ... and run tests
     pytest-3 .