F refactor retrieve/insert properties

Summary

Move back-end logic from the (abstract) transaction layer to the back-end implementation layer (for MySQL). Effectively, this hides the logic of replacement ids (also known under the misnomer "Domains").

related: https://gitlab.indiscale.com/caosdb/customers/umg_med_inf/management/-/issues/49

Focus

• These code changes must not change the API. Therefore integration tests must not be touched.
• The "big" change was moving code from the InsertEntityProperties class to the MySQLInsertEntityProperties class and changing the place where the response from the MySQL backend is transformed from a list of flat object (former rows) to a deep tree of properties which happens in the MySQLRetrieveProperties class now.
• The ProtoProperty class is now used for those deeply nested properties and also for non-scalar values. That means it is back-end agnostic now and yet we can use it for the caching (while the more complex classes Entity oder Property are not well-suited for caching).
• The DatabaseUtils, as before, contains mostly back-end specific implementations (used by MySQLInsertEntityProperties and MySQLRetrieveProperties). Therefor it moved to the ...implementation.MySQL package. Since the Query classes still need this class here and there we cannot make it package visible yet and it has to stay public.
• Note that the Domain class and the setters and getters for "replacements" of the EntityInterface class have been removed because the replacement is now really contained by the MySQL implementation.
• The new Replacement class is basically the successor of the Domain class

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src/main/java/org/caosdb/server/database/backend/implementation/MySQL/DatabaseUtils.java

@@ -93,10 +93,6 @@ public class DatabaseUtils {
         && !p.isDatatypeOverride()
         && (!p.hasProperties() || hasUniquePropertyId(p, e))
         && !(p.getDatatype() instanceof AbstractCollectionDatatype)) {
-      // this property can be represented without any replacement. We explicitly
-      // setReplacement(null) because there is a corner case (related to the inheritance of
-      // properties) where there is a replacement present which belongs to the parent entity, see
-      // https://gitlab.com/caosdb/caosdb-server/-/issues/216.
       stage1Inserts.add(p);
     } else {
       Replacement r = new Replacement(p);