pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<!--
 * ** header v3.0
 * This file is a part of the CaosDB Project.
 *
 * Copyright (C) 2018 Research Group Biomedical Physics,
 * Max-Planck-Institute for Dynamics and Self-Organization Göttingen
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program. If not, see <https://www.gnu.org/licenses/>.
 *
 * ** end header
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.caosdb</groupId>
  <artifactId>caosdb-server</artifactId>
  <version>0.12.2</version>
  <packaging>jar</packaging>
  <name>CaosDB Server</name>
  <scm>
    <connection>scm:git:https://gitlab.indiscale.com/caosdb/src/caosdb-server.git</connection>
  </scm>
  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <project.build.testSourceDirectory>src/test/java</project.build.testSourceDirectory>
    <protobuf.version>3.14.0</protobuf.version>
    <grpc.version>1.42.1</grpc.version>
    <netty-tcnative.version>2.0.34.Final</netty-tcnative.version>
    <restlet.version>2.4.3</restlet.version>
    <log4j.version>2.17.2</log4j.version>
  </properties>
  <repositories>
    <repository>
      <id>maven-central</id>
      <url>https://repo1.maven.org/maven2/</url>
      <name>Maven Central</name>
    </repository>
    <repository>
      <id>maven-restlet</id>
      <name>Restlet repository</name>
      <url>https://maven.restlet.talend.com</url>
    </repository>
    <repository>
      <id>local-maven-repo</id>
      <url>file:///${project.basedir}/.m2-local</url>
    </repository>
  </repositories>
  <dependencyManagement>
    <dependencies>
      <dependency>
        <groupId>org.junit</groupId>
        <artifactId>junit-bom</artifactId>
        <version>5.9.0</version>
        <type>pom</type>
        <scope>import</scope>
      </dependency>
    </dependencies>
  </dependencyManagement>
  <dependencies>
    <dependency>
      <groupId>de.timmfitschen</groupId>
      <artifactId>easy-units</artifactId>
      <version>0.0.1</version>
    </dependency>
    <dependency>
      <groupId>org.quartz-scheduler</groupId>
      <artifactId>quartz</artifactId>
      <version>2.3.2</version>
    </dependency>
    <dependency>
      <groupId>com.fasterxml.jackson.dataformat</groupId>
      <artifactId>jackson-dataformat-yaml</artifactId>
      <version>2.11.0</version>
    </dependency>
    <dependency>
      <groupId>org.apache.shiro</groupId>
      <artifactId>shiro-core</artifactId>
      <version>1.8.0</version>
    </dependency>
    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <!-- preventing parallel execution of some test classes -->
      <groupId>com.github.stephenc.jcip</groupId>
      <artifactId>jcip-annotations</artifactId>
      <version>1.0-1</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.jdom</groupId>
      <artifactId>jdom2</artifactId>
      <version>2.0.6</version>
    </dependency>
    <dependency>
      <groupId>org.restlet.jse</groupId>
      <artifactId>org.restlet</artifactId>
      <version>${restlet.version}</version>
    </dependency>
    <dependency>
      <groupId>org.restlet.jse</groupId>
      <artifactId>org.restlet.ext.fileupload</artifactId>
      <version>${restlet.version}</version>
    </dependency>
    <dependency>
      <groupId>mysql</groupId>
      <artifactId>mysql-connector-java</artifactId>
      <version>8.0.19</version>
    </dependency>
    <dependency>
      <groupId>org.xerial</groupId>
      <artifactId>sqlite-jdbc</artifactId>
      <version>3.16.1</version>
    </dependency>
    <dependency>
      <groupId>net.snaq</groupId>
      <artifactId>dbpool</artifactId>
      <version>7.0.1</version>
    </dependency>
    <dependency>
      <groupId>org.reflections</groupId>
      <artifactId>reflections</artifactId>
      <version>0.9.11</version>
    </dependency>
    <dependency>
      <groupId>org.antlr</groupId>
      <artifactId>antlr4</artifactId>
      <version>4.8-1</version>
    </dependency>
    <dependency>
      <groupId>org.restlet.jse</groupId>
      <artifactId>org.restlet.ext.jetty</artifactId>
      <version>${restlet.version}</version>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-math</artifactId>
      <version>2.2</version>
    </dependency>
    <dependency>
      <groupId>commons-codec</groupId>
      <artifactId>commons-codec</artifactId>
      <version>1.12</version>
    </dependency>
    <dependency>
      <groupId>com.sun.mail</groupId>
      <artifactId>javax.mail</artifactId>
      <version>1.6.0-rc1</version>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-jcs-core</artifactId>
      <version>2.2.1</version>
    </dependency>
    <dependency>
      <groupId>org.kohsuke</groupId>
      <artifactId>libpam4j</artifactId>
      <version>1.8</version>
    </dependency>
    <dependency>
      <groupId>org.eclipse.jetty</groupId>
      <artifactId>jetty-util-ajax</artifactId>
      <version>9.2.14.v20151106</version>
    </dependency>
    <dependency>
      <groupId>org.apache.logging.log4j</groupId>
      <artifactId>log4j-slf4j-impl</artifactId>
      <version>${log4j.version}</version>
    </dependency>
    <dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-api</artifactId>
      <version>1.7.32</version>
    </dependency>
    <dependency>
      <groupId>org.apache.logging.log4j</groupId>
      <artifactId>log4j-api</artifactId>
      <version>${log4j.version}</version>
    </dependency>
    <dependency>
      <groupId>org.apache.logging.log4j</groupId>
      <artifactId>log4j-core</artifactId>
      <version>${log4j.version}</version>
    </dependency>
    <dependency>
      <groupId>io.grpc</groupId>
      <artifactId>grpc-netty</artifactId>
      <version>${grpc.version}</version>
    </dependency>
    <dependency>
      <groupId>io.netty</groupId>
      <artifactId>netty-tcnative</artifactId>
      <version>${netty-tcnative.version}</version>
      <classifier>${os.detected.classifier}</classifier>
      <scope>runtime</scope>
    </dependency>
    <dependency>
      <groupId>io.grpc</groupId>
      <artifactId>grpc-protobuf</artifactId>
      <version>${grpc.version}</version>
    </dependency>
    <dependency>
      <groupId>io.grpc</groupId>
      <artifactId>grpc-stub</artifactId>
      <version>${grpc.version}</version>
    </dependency>
    <dependency>
      <groupId>javax.annotation</groupId>
      <artifactId>javax.annotation-api</artifactId>
      <version>1.3.2</version>
    </dependency>
    <dependency>
      <groupId>com.google.protobuf</groupId>
      <artifactId>protobuf-java</artifactId>
      <version>${protobuf.version}</version>
    </dependency>
  </dependencies>
  <build>
    <resources>
      <resource>
        <directory>${basedir}/src/main/</directory>
        <includes>
          <include>**/*.properties</include>
        </includes>
      </resource>
    </resources>
    <sourceDirectory>${basedir}/src/main/java</sourceDirectory>
    <scriptSourceDirectory>${basedir}/src/main/scripts</scriptSourceDirectory>
    <testSourceDirectory>${basedir}/src/test/java</testSourceDirectory>
    <outputDirectory>${basedir}/target/classes</outputDirectory>
    <testOutputDirectory>${basedir}/target/test-classes</testOutputDirectory>
    <extensions>
      <extension>
        <groupId>kr.motd.maven</groupId>
        <artifactId>os-maven-plugin</artifactId>
        <version>1.7.0</version>
      </extension>
    </extensions>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-shade-plugin</artifactId>
        <version>2.4.3</version>
        <executions>
          <execution>
            <phase>package</phase>
            <goals>
              <goal>shade</goal>
            </goals>
            <configuration>
              <finalName>${project.artifactId}-${project.version}-jar-with-dependencies</finalName>
              <transformers>
                <transformer implementation="com.github.edwgiz.mavenShadePlugin.log4j2CacheTransformer.PluginsCacheFileTransformer"></transformer>
                <transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
                  <mainClass>org.caosdb.server.CaosDBServer</mainClass>
                </transformer>
              </transformers>
            </configuration>
          </execution>
        </executions>
        <dependencies>
          <dependency>
            <groupId>com.github.edwgiz</groupId>
            <artifactId>maven-shade-plugin.log4j2-cachefile-transformer</artifactId>
            <version>2.8.1</version>
          </dependency>
        </dependencies>
      </plugin>
      <plugin>
        <groupId>org.antlr</groupId>
        <artifactId>antlr4-maven-plugin</artifactId>
        <version>4.8-1</version>
        <configuration>
          <sourceDirectory>${basedir}/src/main/java</sourceDirectory>
        </configuration>
        <executions>
          <execution>
            <goals>
              <goal>antlr4</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>3.8.1</version>
        <configuration>
          <source>11</source>
          <target>11</target>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
        <version>3.0.0-M5</version>
        <configuration>
          <includes>
            <include>**/*.java</include>
          </includes>
          <systemPropertyVariables>
            <caosdb.debug>true</caosdb.debug>
            <log4j2.debug>true</log4j2.debug>
          </systemPropertyVariables>
          <reuseForks>false</reuseForks>
          <!-- Start 0.5 JVMs per CPU core
                    Higher numbers *seem* to lead to higher failure rates... :-/ -->
          <forkCount>0.5C</forkCount>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>buildnumber-maven-plugin</artifactId>
        <version>1.4</version>
        <executions>
          <execution>
            <phase>generate-resources</phase>
            <goals>
              <goal>create-metadata</goal>
            </goals>
          </execution>
        </executions>
        <configuration>
          <addOutputDirectoryToResources>true</addOutputDirectoryToResources>
          <applicationPropertyName>project.name</applicationPropertyName>
          <revisionPropertyName>project.revision</revisionPropertyName>
          <versionPropertyName>project.version</versionPropertyName>
          <timestampPropertyName>build.timestamp</timestampPropertyName>
          <outputDirectory>${basedir}/target/classes/org/caosdb/server/</outputDirectory>
          <outputName>build.properties</outputName>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>exec-maven-plugin</artifactId>
        <version>1.6.0</version>
        <executions>
          <execution>
            <id>run</id>
            <goals>
              <goal>java</goal>
            </goals>
            <configuration>
              <mainClass>org.caosdb.server.CaosDBServer</mainClass>
              <arguments>
                <argument>silent</argument>
              </arguments>
            </configuration>
          </execution>
          <execution>
            <id>run-debug</id>
            <goals>
              <goal>java</goal>
            </goals>
            <configuration>
              <mainClass>org.caosdb.server.CaosDBServer</mainClass>
              <arguments>
                <argument>silent</argument>
              </arguments>
              <systemProperties>
                <systemProperty>
                  <key>caosdb.debug</key>
                  <value>true</value>
                </systemProperty>
              </systemProperties>
            </configuration>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>com.spotify.fmt</groupId>
        <artifactId>fmt-maven-plugin</artifactId>
        <version>2.21.1</version>
        <configuration>
          <skip>
            <!-- Set skip to `true` to prevent auto-formatting while coding. -->
            false
          </skip>
        </configuration>
        <executions>
          <execution>
            <goals>
              <goal>format</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <!-- Remove easy-units from classpath generation because of https://github.com/jdee-emacs/jdee/issues/125 
                (no sources inside easy-units) -->
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-dependency-plugin</artifactId>
        <configuration>
          <excludeArtifactIds>easy-units</excludeArtifactIds>
        </configuration>
      </plugin>
      <plugin>
        <groupId>kr.motd.maven</groupId>
        <artifactId>os-maven-plugin</artifactId>
        <version>1.7.0</version>
        <executions>
          <execution>
            <phase>initialize</phase>
            <goals>
              <goal>detect</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <!-- code generation protobuf/grpc -->
      <plugin>
        <groupId>org.xolstice.maven.plugins</groupId>
        <artifactId>protobuf-maven-plugin</artifactId>
        <version>0.6.1</version>
        <configuration>
          <protoSourceRoot>${basedir}/caosdb-proto/proto/</protoSourceRoot>
          <protocArtifact>com.google.protobuf:protoc:${protobuf.version}:exe:${os.detected.classifier}</protocArtifact>
          <pluginId>grpc-java</pluginId>
          <pluginArtifact>io.grpc:protoc-gen-grpc-java:${grpc.version}:exe:${os.detected.classifier}</pluginArtifact>
        </configuration>
        <executions>
          <execution>
            <goals>
              <goal>compile</goal>
              <goal>compile-custom</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>
  <url>caosdb.org</url>
</project>