F deprecate yamlapi

Summary

The yamlapi should be obsolete in future (see Issue #62 (closed)). Warnings to all functions of this API were added.

Focus

All changes were made in the yamlapi. Tests for the warning were added.

Test Environment

tox

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• All automated tests pass
• Reference related Issues
• Up-to-date CHANGELOG.md
• Annotations in code (Gitlab comments)
  • Intent of new code
  • Problems with old code
  • Why this implementation?

Check List for the Reviewer

• I understand the intent of this MR
• All automated tests pass
• Up-to-date CHANGELOG.md
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For further good practices have a look at our review guidelines.

src/caosdb/yamlapi.py

@@ -22,7 +22,11 @@
 # ** end header
 #
 
-"""YAML interface for the database (caosdb)"""
+""" YAML interface for the database (caosdb) """
+""" !!! Deprecated !!! """
+
+
+
 
 import yaml
 from lxml import etree
@@ -31,9 +35,12 @@ import re
 import caosdb
 import caosdb.common.utils as utils
 from caosdb.connection.connection import get_connection
-
-
+import warnings
 def append_sublist(v, newel, def_entity_type):
+    warnings.warn("""
+                  This function is deprecated and will be removed with the next release.
+                  Please use caosdb-advanced-user-tools/models/data_model.py for a
+                  similar functionality.""", DeprecationWarning)
     if v is None:
         return
     for i in v:
@@ -46,6 +53,10 @@ def append_sublist(v, newel, def_entity_type):
 
 
 def kv_to_xml(k, v):
+    warnings.warn("""
+                  This function is deprecated and will be removed with the next release.
+                  Please use caosdb-advanced-user-tools/models/data_model.py for a
+                  similar functionality.""", DeprecationWarning)
     newel = Element(k)
     # code.interact(local=locals())
     if isinstance(v, list):  # Top level loop
@@ -69,10 +80,18 @@ def dict_to_xml(d):
     d: The dictionary (possibly loaded from yaml)
        to convert to caosdb-xml.
     """
+    warnings.warn("""
+                  This function is deprecated and will be removed with the next release.
+                  Please use caosdb-advanced-user-tools/models/data_model.py for a
+                  similar functionality.""", DeprecationWarning)
     return kv_to_xml("Entities", d)
 
 
 def yaml_to_xml(yamlstr):
+    warnings.warn("""
+                  This function is deprecated and will be removed with the next release.
+                  Please use caosdb-advanced-user-tools/models/data_model.py for a
+                  similar functionality.""", DeprecationWarning)
     """Load a yaml document from yamlstr and converts it to XML.
 
     Parameters
@@ -86,6 +105,10 @@ def yaml_to_xml(yamlstr):
 
 def process(text):
     """Do some replacements on the original file to obtain valid yaml."""
+    warnings.warn("""
+                  This function is deprecated and will be removed with the next release.
+                  Please use caosdb-advanced-user-tools/models/data_model.py for a
+                  similar functionality.""", DeprecationWarning)
     processed = re.sub(
         "^(\\s*)-\\s*\\{?(.*)\\}?\\s*$",
         "\\1- {\\2}",
@@ -98,6 +121,10 @@ def process(text):
 
 
 def yaml_file_to_xml(yamlfilename):
+    warnings.warn("""
+                  This function is deprecated and will be removed with the next release.
+                  Please use caosdb-advanced-user-tools/models/data_model.py for a
+                  similar functionality.""", DeprecationWarning)
     with open(yamlfilename, "r") as f:
         return yaml_to_xml(process(f.read()))
 
 
 def insert_yaml_file(yamlfilename, simulate=False):
     """Inserts the contents of 'yamlfilename' into the database.
 
     Set 'simulate' to True if you don't actually want to insert the xml,
     but only receive what would be sent.
     """
-    con = get_connection()
+    warnings.warn("""
+                  This function is deprecated and will be removed with the next release.
+                  Please use caosdb-advanced-user-tools/models/data_model.py for a
+                  similar functionality.""", DeprecationWarning)
     prs = etree.XMLParser(remove_blank_text=True)
     sent_xml = etree.tostring(
         etree.fromstring(