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Verified Commit 4ae481ce authored by Daniel Hornung's avatar Daniel Hornung
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REFACTOR: LinkAhead renaming.

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tests/test_tenpoints.py
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# -*- coding: utf-8 -*-
#
# ** header v3.0
# This file is a part of the CaosDB Project.
# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2024 Daniel Hornung
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
# Copyright (C) 2024 IndiScale GmbH
# Copyright (C) 2024 Daniel Hornung
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
......@@ -27,9 +27,9 @@
@author: fitschen
"""
import caosdb as h
import linkahead as db
import os
from caosdb.exceptions import CaosDBException
from linkahead.exceptions import LinkAheadException
'''1) Struktur:
......@@ -55,7 +55,7 @@ Description oder einer Zahl'''
def setup_function(function):
try:
h.execute_query("FIND ENTITY *").delete()
db.execute_query("FIND ENTITY *").delete()
except Exception as e:
print(e)
......@@ -70,30 +70,30 @@ def test_tenpoints1_1():
enthalten (Gewicht, Beschreibung, Identifkationsnummern, etc.)
'''
c = h.Container()
c = db.Container()
c.append(
h.Property(
db.Property(
name="SimpleTextProperty",
description="simple text property (from test_tenpoints.py)",
datatype='text'))
c.append(
h.Property(
db.Property(
name="SimpleDoubleProperty",
description="simple double property (from test_tenpoints.py)",
datatype='double'))
c.append(
h.Property(
db.Property(
name="SimpleIntegerProperty",
description="simple integer property (from test_tenpoints.py)",
datatype='integer'))
c.append(
h.Property(
db.Property(
name="SimpleDatetimeProperty",
description="simple datetime property (from test_tenpoints.py)",
datatype='datetime'))
c.append(
h.RecordType(
db.RecordType(
name="SimpleRecordType",
description="simple recordType (from test_tenpoints.py)") .add_property(
name='SimpleTextProperty') .add_property(
......@@ -108,35 +108,35 @@ def test_tenpoints1_2():
'''
1.2 Einfügen von RecordTypes, die zusätzlich Dateien referenzieren
'''
c = h.Container()
c = db.Container()
c.append(
h.Property(
db.Property(
name="SimpleTextProperty",
description="simple text property (from test_tenpoints.py)",
datatype='text'))
c.append(
h.Property(
db.Property(
name="SimpleDoubleProperty",
description="simple double property (from test_tenpoints.py)",
datatype='double'))
c.append(
h.Property(
db.Property(
name="SimpleIntegerProperty",
description="simple integer property (from test_tenpoints.py)",
datatype='integer'))
c.append(
h.Property(
db.Property(
name="SimpleDatetimeProperty",
description="simple datetime property (from test_tenpoints.py)",
datatype='datetime'))
c.append(
h.Property(
db.Property(
name="SimpleFileProperty",
description="simple file property (from test_tenpoints.py)",
datatype='file'))
c.append(
h.RecordType(
db.RecordType(
name="SimpleRecordType",
description="simple recordType (from test_tenpoints.py)") .add_property(
name='SimpleTextProperty') .add_property(
......@@ -154,35 +154,35 @@ def test_tenpoints1_3():
andere RecordTypes enthalten
'''
c = h.Container()
c = db.Container()
c.append(
h.Property(
db.Property(
name="SimpleTextProperty",
description="simple text property (from test_tenpoints.py)",
datatype='text'))
c.append(
h.Property(
db.Property(
name="SimpleDoubleProperty",
description="simple double property (from test_tenpoints.py)",
datatype='double'))
c.append(
h.Property(
db.Property(
name="SimpleIntegerProperty",
description="simple integer property (from test_tenpoints.py)",
datatype='integer'))
c.append(
h.Property(
db.Property(
name="SimpleDatetimeProperty",
description="simple datetime property (from test_tenpoints.py)",
datatype='datetime'))
c.append(
h.Property(
db.Property(
name="SimpleFileProperty",
description="simple file property (from test_tenpoints.py)",
datatype='file'))
c.append(
h.RecordType(
db.RecordType(
name="SimpleRecordType",
description="simple recordType (from test_tenpoints.py)") .add_property(
name='SimpleTextProperty') .add_property(
......@@ -192,11 +192,12 @@ def test_tenpoints1_3():
name='SimpleFileProperty'))
c.append(
h.Property(
db.Property(
name="ReferenceProperty",
description='reference property (from test_tenpoints.py)',
datatype="SimpleRecordType"))
c.append(h.RecordType(name="ComlexRecordType", description="complex recordType with references (from test_tenpoints.py)")
c.append(db.RecordType(name="ComlexRecordType",
description="complex recordType with references (from test_tenpoints)")
.add_property(name='ReferenceProperty') # first method
# second method, doesn't need the ReferenceProperty
.add_property(name='SimpleRecordType')
......@@ -220,37 +221,37 @@ def test_tenpoints1_5():
RecordTypes / Properties
'''
c = h.Container()
c = db.Container()
c.append(
h.Property(
db.Property(
name="SimpleTextProperty",
description="simple text property (from test_tenpoints.py)",
datatype='text'))
c.append(
h.Property(
db.Property(
name="SimpleDoubleProperty",
description="simple double property (from test_tenpoints.py)",
datatype='double'))
c.append(
h.Property(
db.Property(
name="SimpleIntegerProperty",
description="simple integer property (from test_tenpoints.py)",
datatype='integer'))
c.append(
h.Property(
db.Property(
name="SimpleDatetimeProperty",
description="simple datetime property (from test_tenpoints.py)",
datatype='datetime'))
c.append(
h.Property(
db.Property(
name="SimpleFileProperty",
description="simple file property (from test_tenpoints.py)",
datatype='file'))
c.insert()
d = h.Container()
d = db.Container()
d.append(
h.RecordType(
db.RecordType(
name="SimpleRecordType",
description="simple recordType (from test_tenpoints.py)") .add_property(
name='SimpleTextProperty') .add_property(
......@@ -260,11 +261,11 @@ def test_tenpoints1_5():
name='SimpleFileProperty'))
d.append(
h.Property(
db.Property(
name="ReferenceProperty",
description='reference property (from test_tenpoints.py)',
datatype="SimpleRecordType"))
d.append(h.RecordType(name="ComplexRecordType", description="complex recordType with references (from test_tenpoints.py)")
d.append(db.RecordType(name="ComplexRecordType", description="complex recordType with references (from test_tenpoints.py)")
.add_property(name='ReferenceProperty') # first method
# second method, doesn't need the ReferenceProperty
.add_property(name='SimpleRecordType')
......@@ -272,7 +273,7 @@ def test_tenpoints1_5():
d.insert()
sr = (h.Record().add_parent(name="SimpleRecordType")
sr = (db.Record().add_parent(name="SimpleRecordType")
.add_property(name="SimpleTextProperty", value="Some Text")
.add_property(name="SimpleDoubleProperty", value=3.14)
.add_property(name="SimpleIntegerProperty", value=1337)
......@@ -280,12 +281,12 @@ def test_tenpoints1_5():
sr.insert()
cr1 = (h.Record().add_parent(name="ComplexRecordType")
cr1 = (db.Record().add_parent(name="ComplexRecordType")
.add_property(name="ReferenceProperty", value=sr))
cr1.insert()
cr2 = (h.Record().add_parent(name="ComplexRecordType")
cr2 = (db.Record().add_parent(name="ComplexRecordType")
.add_property(name="SimpleRecordType", value=sr))
cr2.insert()
......@@ -299,36 +300,36 @@ def test_tenpoints2_1AND2_2():
'''
"""data model."""
c = h.Container()
c = db.Container()
c.append(
h.Property(
db.Property(
name="SimpleTextProperty",
description="simple text property (from test_tenpoints.py)",
datatype='text'))
c.append(
h.Property(
db.Property(
name="SimpleDoubleProperty",
description="simple double property (from test_tenpoints.py)",
datatype='double',
unit="m"))
c.append(
h.Property(
db.Property(
name="SimpleIntegerProperty",
description="simple integer property (from test_tenpoints.py)",
datatype='integer'))
c.append(
h.Property(
db.Property(
name="SimpleDatetimeProperty",
description="simple datetime property (from test_tenpoints.py)",
datatype='datetime'))
c.append(
h.Property(
db.Property(
name="SimpleFileProperty",
description="simple file property (from test_tenpoints.py)",
datatype='file'))
c.append(
h.RecordType(
db.RecordType(
name="SimpleRecordType",
description="simple recordType (from test_tenpoints.py)") .add_property(
name='SimpleTextProperty',
......@@ -343,11 +344,12 @@ def test_tenpoints2_1AND2_2():
importance='obligatory'))
c.append(
h.Property(
db.Property(
name="ReferenceProperty",
description='reference property (from test_tenpoints.py)',
datatype="SimpleRecordType"))
c.append(h.RecordType(name="ComplexRecordType", description="complex recordType with references (from test_tenpoints.py)")
c.append(db.RecordType(name="ComplexRecordType",
description="complex recordType with references (from test_tenpoints)")
.add_property(name='ReferenceProperty') # first method
# second method, doesn't need the ReferenceProperty
.add_property(name='SimpleRecordType')
......@@ -357,7 +359,7 @@ def test_tenpoints2_1AND2_2():
print(c)
''' data'''
d = h.Container()
d = db.Container()
''' create testfile '''
f = open("test.dat", "w")
......@@ -366,7 +368,7 @@ def test_tenpoints2_1AND2_2():
''' prepare file record '''
d.append(
h.File(
db.File(
id=-1,
path='testfiles/testfile',
file="test.dat",
......@@ -374,7 +376,7 @@ def test_tenpoints2_1AND2_2():
''' prepare simple record with file property'''
d.append(
h.Record(
db.Record(
id=-2,
name="SimpleRecord") .add_parent(
name='SimpleRecordType') .add_property(
......@@ -389,7 +391,7 @@ def test_tenpoints2_1AND2_2():
name='SimpleFileProperty',
value=-1))
d.append(h.Record()
d.append(db.Record()
.add_parent(name="ComplexRecordType")
.add_property(name="ReferenceProperty", value=-2)
)
......@@ -416,23 +418,23 @@ def test_tenpoints2_3():
'''2.3 Verwendung von Einheiten'''
"""insert simple property with unit."""
p1 = h.Property(name='unittestproperty', datatype='double', unit='m')
p1 = db.Property(name='unittestproperty', datatype='double', unit='m')
p1.insert()
'''subtyping with unit inheritance'''
p2 = h.Property(name='SubTypeOfUnitTestProperty').add_parent(id=p1.id)
p2 = db.Property(name='SubTypeOfUnitTestProperty').add_parent(id=p1.id)
p2.insert()
assert 'm' == p2.unit
'''implement property'''
rt = h.RecordType(
rt = db.RecordType(
name='SimpleRecordType',
description='simple recordType (from test_tenpoints.py)').add_property(
id=p2.id)
rt.insert()
print(rt)
rtid = rt.id
rt = h.RecordType(id=rtid).retrieve()
rt = db.RecordType(id=rtid).retrieve()
print(rt)
assert p2.id == rt.get_properties()[0].id
......@@ -443,43 +445,43 @@ def test_tenpoints2_4():
'''2.4 Nachtägliches Annotieren von Datensätzen, z.B. hinzufügen einer
Description oder einer Zahl'''
c = h.Container()
c = db.Container()
c.append(
h.Property(
db.Property(
name="SimpleTextProperty",
description="simple text property (from test_tenpoints.py)",
datatype='text'))
c.append(
h.Property(
db.Property(
name="SimpleDoubleProperty",
description="simple double property (from test_tenpoints.py)",
datatype='double'))
c.append(
h.Property(
db.Property(
name="SimpleIntegerProperty",
description="simple integer property (from test_tenpoints.py)",
datatype='integer'))
c.append(
h.Property(
db.Property(
name="SimpleDatetimeProperty",
description="simple datetime property (from test_tenpoints.py)",
datatype='datetime'))
c.append(
h.Property(
db.Property(
name="SimpleFileProperty",
description="simple file property (from test_tenpoints.py)",
datatype='file'))
c.append(
h.Property(
db.Property(
name="CommentProperty",
description="comment property",
datatype='text'))
c.insert()
d = h.Container()
d = db.Container()
d.append(
h.RecordType(
db.RecordType(
name="SimpleRecordType",
description="simple recordType (from test_tenpoints.py)") .add_property(
name='SimpleTextProperty',
......@@ -492,11 +494,12 @@ def test_tenpoints2_4():
name='SimpleFileProperty'))
d.append(
h.Property(
db.Property(
name="ReferenceProperty",
description='reference property (from test_tenpoints.py)',
datatype="SimpleRecordType"))
d.append(h.RecordType(name="ComplexRecordType", description="complex recordType with references (from test_tenpoints.py)")
d.append(db.RecordType(name="ComplexRecordType",
description="complex recordType with references (from test_tenpoints)")
.add_property(name='ReferenceProperty') # first method
# second method, doesn't need the ReferenceProperty
.add_property(name='SimpleRecordType')
......@@ -510,10 +513,10 @@ def test_tenpoints2_4():
f.close()
''' prepare file record '''
e = h.Container()
e.append(h.File(id=-1, path='testfiles/testfile', file="test.dat"))
e = db.Container()
e.append(db.File(id=-1, path='testfiles/testfile', file="test.dat"))
sr = (h.Record().add_parent(name="SimpleRecordType")
sr = (db.Record().add_parent(name="SimpleRecordType")
.add_property(name="SimpleTextProperty", value="Some Text")
.add_property(name="SimpleDoubleProperty", value=3.14)
.add_property(name="SimpleIntegerProperty", value=1337)
......@@ -523,7 +526,7 @@ def test_tenpoints2_4():
e.append(sr).insert()
cr1 = (
h.Record(
db.Record(
name="My special unique record name").add_parent(
name="ComplexRecordType") .add_property(
name="ReferenceProperty",
......@@ -531,28 +534,29 @@ def test_tenpoints2_4():
cr1.insert()
cr2 = (h.Record().add_parent(name="ComplexRecordType")
cr2 = (db.Record().add_parent(name="ComplexRecordType")
.add_property(name="SimpleRecordType", value=sr))
recid = cr2.insert().id
'''annotate file'''
h.File(
db.File(
path='testfiles/testfile').retrieve().add_property(
c.get_entity_by_name("CommentProperty"),
value="This is a really nice file.").update()
'''annotate records'''
h.Record(
db.Record(
name="My special unique record name").retrieve().add_property(
c.get_entity_by_name("CommentProperty"),
value="This is a really nice record.").update()
h.Record(
db.Record(
id=recid).retrieve().add_property(
c.get_entity_by_name("CommentProperty"),
value="I don't like this record.").update()
h.execute_query(
"FIND RECORD SimpleRecordType WITH SimpleIntegerProperty=1337 AND SimpleTextProperty='Some Text'",
db.execute_query(
"FIND RECORD SimpleRecordType WITH SimpleIntegerProperty=1337"
" AND SimpleTextProperty='Some Text'",
unique=True).add_property(
c.get_entity_by_name("CommentProperty"),
value="I looove this record!!!!!11.").update()
......@@ -561,18 +565,18 @@ def test_tenpoints2_4():
def test_existence():
try:
h.Property(name="SimpleTextProperty").retrieve(unique=True)
db.Property(name="SimpleTextProperty").retrieve(unique=True)
except CaosDBException:
except LinkAheadException:
print("SimpleTextProperty does not exist!")
p = h.Property(
p = db.Property(
name="SimpleTextProperty",
description="simple text property (from test_tenpoints.py)",
datatype='text').insert()
if int(
h.Property(
db.Property(
name="SimpleTextProperty").retrieve(
unique=True).id) >= 0:
print("SimpleTextProperty does exist!")
......
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