F auto converter and transformer registry

Summary

Part of https://gitlab.indiscale.com/caosdb/customers/horizon-batcat/horizon-batcat-meta/-/issues/150. Makes the behavior of scanner.scan_structure_elements consistent to scanner.scan_directory by auto-generating converter and and transformer registry from the crawler definition.

Focus

Just the new optional behavior. Since it's still ok to give both registries explicitly to reproduce the former behavior, we shouldn't lose any backwards compatibility.

Test Environment

Unit test and manually run the elabFTW crawler from the elabFTW showcase.

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src/caoscrawler/scanner.py

@@ -486,7 +486,7 @@ def scan_directory(dirname: Union[str, list[str]], crawler_definition_path: str,
 
 def scan_structure_elements(items: Union[list[StructureElement], StructureElement],
                             crawler_definition: dict,
-                            converter_registry: dict,
+                            converter_registry: Optional[dict] = None,
                             restricted_path: Optional[list[str]] = None,
                             debug_tree: Optional[DebugTree] = None,
                             registered_transformer_functions: Optional[dict] = None) -> (
@@ -508,6 +508,15 @@ def scan_structure_elements(items: Union[list[StructureElement], StructureElemen
          Traverse the data tree only along the given path. When the end of the
          given path is reached, traverse the full tree as normal. See docstring
          of 'scanner' for more details.
+    converter_registry: dict, optional
+         Optional dictionary containing the converter definitions
+         needed for the crawler definition. If none is given, it will
+         be generated from the `crawler_definition`. Default is None.
+    registered_transformer_functions: dict, optional
+         Optional dictionary containing the transformer function
+         definitions needed for the crawler definition. If none is
+         given, it will be generated from the
+         `crawler_definition`. Default is None.
 
     Returns
     -------
@@ -519,6 +528,10 @@ def scan_structure_elements(items: Union[list[StructureElement], StructureElemen
     if not isinstance(items, list):
         items = [items]
 
+    if converter_registry is None:
+        converter_registry = create_converter_registry(crawler_definition)
+    if registered_transformer_functions is None:
+        registered_transformer_functions = create_transformer_registry(crawler_definition)
     # TODO: needs to be covered somewhere else
     # self.run_id = uuid.uuid1()
     converters = initialize_converters(crawler_definition, converter_registry)