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caosdb
Software
CaosDB Crawler
Commits
dbd982a2
Commit
dbd982a2
authored
1 year ago
by
Alexander Schlemmer
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TST: added failing test for transformer feature
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!160
STY: styling
,
!126
Transformers
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dbd982a2
#!/usr/bin/env python3
# encoding: utf-8
#
# This file is a part of the CaosDB Project.
#
# Copyright (C) 2023 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
# Alexander Schlemmer <alexander.schlemmer@ds.mpg.de>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
#
"""
Unit test functions for the transformer feature of the scanner.
Currently, this is under development.
See: https://gitlab.indiscale.com/caosdb/src/caosdb-crawler/-/issues/107
"""
from
functools
import
partial
from
pathlib
import
Path
from
tempfile
import
NamedTemporaryFile
from
unittest.mock
import
MagicMock
,
Mock
,
patch
import
caosdb
as
db
import
pytest
import
yaml
from
caoscrawler.scanner
import
(
create_converter_registry
,
load_definition
,
scan_directory
,
scan_structure_elements
)
from
caoscrawler.structure_elements
import
(
DictElement
,
DictListElement
,
DictTextElement
,
File
)
from
pytest
import
raises
from
utils
import
dircheckstr
as
dircheck_base
UNITTESTDIR
=
Path
(
__file__
).
parent
dircheckstr
=
partial
(
dircheck_base
,
UNITTESTDIR
/
"
test_directories
"
/
"
examples_article
"
)
def
test_simple_transformer
():
"""
Test the correct list of returned records by the scanner using the
scifolder example from the article.
"""
records
=
scan_directory
(
UNITTESTDIR
/
"
test_directories
"
/
"
test_transformers
"
,
UNITTESTDIR
/
"
test_directories
"
/
"
test_transformers
"
/
"
cfood.yml
"
)
for
r
in
records
:
assert
r
.
get_property
(
"
Day
"
)
is
not
None
assert
r
.
get_property
(
"
DayShort
"
)
is
not
None
assert
r
.
get_property
(
"
Day
"
).
value
!=
"
$day_long
"
assert
r
.
get_property
(
"
DayShort
"
).
value
!=
"
$day_short
"
# breakpoint()
assert
False
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