ENH: added profile for integration tests

integrationtests/test-profile/custom/caosdb-server/.add_dir_to_git

+This directory should be created when cloning or pulling this git repository.

integrationtests/test-profile/custom/caosdb-server/scripting/home/.pycaosdb.ini

+[Connection]
+url = https://localhost:10443
+cacert = /opt/caosdb/cert/caosdb.cert.pem
+debug = 0
+timeout = 5000
+
+[Misc]
+sendmail = /usr/local/bin/sendmail_to_file

integrationtests/test-profile/paths/extroot/README.md

+This directory is mounted into the LinkAhead docker container when the debug
+profile is used, to allow the inclusion of external file systems.

integrationtests/test-profile/profile.yml

+default:
+  # Optionally, specify a base compose file. The default base compose file is
+  # located in ./compose/docker-compose-default.yml. A different compose file
+  # may be useful when other services shall be included, e.g. nginx or django.
+  # base_compose_file: "compose/docker-compose-default.yml"
+
+  # Directories (list of strings) (or single directory (string, deprecated))
+  # with customization files.
+  # Directories listed later in the list take precedence over earlier ones.
+  # If you change this, you need to include the full list of directories
+  # (including possibly directories contained in the default setting).
+  # custom:
+    # Standard directory for customizations
+    # - "./custom"                 # included by default
+    # LinkAhead Theme for the web interface
+    # - "./theme-linkahead"        # included by default
+    # - "./included_customization" # since this is later in the list this takes precedence
+
+  # Paths to be mounted into Docker, all entries are optional.
+  paths:
+    # extroot: From where files are copied/symlinked.  This is a
+    # list of `NAME: PATH` pairs or a single path.  
+    extroot:
+      "": "paths/extroot"
+    #
+    #  "base": "/path/to/base/dir"
+    #  "other": "/path/to/other"
+    #
+    # dropoffbox: (Soon to be deprecated.) Files can be written here, but note that you may need to
+    # become root to remove this directory later. The corresponding server property is DROP_OFF_BOX.
+    # dropoffbox: "/path/to/dropoffbox"
+
+  # Docker building configuration
+  # References can be either hashes of commits or branch names
+  refs:
+    # SERVER: dev
+    # PYLIB: dev
+    # MYSQLBACKEND: dev
+    # WEBUI: dev
+    # ADVANCEDUSERTOOLS: dev
+
+  # General configuration options
+  conf:
+    # Shall the SQL & caosroot dumps at custom/other/restore/ be used?
+    # restore: false
+    restore: true
+    # uncomment to disable tls (ssl). This might be insecure!
+    # no_tls: false
+    # Shall the local users be imported as LinkAhead users?
+    # local_users: false
+    # Shall the anonymous user have the administration role?  Implies auth_optional: TRUE
+    # anonymous_admin: false
+    # Shall NIS/LDAP be used for authentication?
+    # nis: false
+    # Shall a mail server be used?
+    # mail: false
+    # You can provide the path to an non-standard sendmail executable
+    # sendmail: /usr/sbin/sendmail
+    # sendmail: /usr/local/bin/sendmail_to_file
+    # Shall the server run in debug mode?
+    # This will bind-mount the following directories from custom into the Docker
+    # container:
+    # - debug-authtoken :: Authentication tokens will be stored here.
+    # - debug-scripting-bin :: Used as the server-side scripting bin dir.
+    # debug: false
+    debug: true
+    # URL of the docker registry.  Set to "" to look locally.
+    # registry_server: "gitlab.indiscale.com:5050"
+    # The account for accessing the registry server.  "" means no account.
+    # registry_account: ""
+    # The secret token for accessing the registry server.  "" means no token.
+    # registry_token: ""
+    # Name of the docker image
+    # image: "caosdb/src/caosdb-deploy"
+    # Tag of the docker image
+    # tag: "latest"
+    # Name of the main Docker container.  Set to "" to use an auto-generated
+    # name, which is necessary for running multiple instances
+    # container_name: "linkahead"
+    # Directory where backups shall be stored.
+    # backup_dir: "backup"
+    # The time zone for the server
+    # timezone: "Coordinated Universal Time"
+
+    # You can set labels for the docker container here
+    # labels:
+    #   label_1_key: label_1_value
+    #   label_2_key: label_2_value
+
+    # User/Group of the server, either numeric or names.
+    # user_group: 999:999
+
+    # Network settings.
+    network:
+    # The subnet for the Docker containers
+    # default: auto selected by docker
+    # You can set it with:
+    # subnet: 10.3.128.0/17
+    # Port for accessing LinkAhead via HTTPS
+    # port_ssl: 10443
+    # Port for accessing LinkAhead via plain HTTP (not recommended when
+    # accessible from untrusted networks, but ok for testing or when behind
+    # a proxy)
+    # port_plain: 8000
+    # Port for GRPC end-point via HTTPS
+    # port_grpc_ssl: 8443
+    # Port for GRPC end-point via plain HTTP
+    # port_grpc_plain: 8080
+    # Port for debugging the LinkAhead JVM
+    # port_debug: 9000
+    # Port for profiling the LinkAhead JVM via JMX
+    # port_profiler: 9090
+    # listen to ip address ("" means any)
+    # bind_ip: "127.0.0.1"
+
+    server:
+      # All the keys of conf are set as environment variables in the server
+      # container before the server start. This overrides the server.conf
+      # settings in any other files, even the settings from
+      # `custom/caosdb-server/conf/ext/server.conf.d/`
+      # Check out conf/core/server.conf in the caosdb-server repository for
+      # options.
+      #
+      # When the conf variables are unset, the server uses its default values
+      # or the values from the `server.conf.d` directory.
+      conf:
+        # uncomment to enable the anonymous user
+        # auth_optional: TRUE
+        # uncomment to use the your custom authtoken config. See
+        # `conf/core/authtoken.example.yaml` for examples.
+        # Note: The path is relative to the caosdb server's root directory.
+        # authtoken_config: conf/core/authtoken.yaml
+
+        # HTTPS port of the grpc end-point
+        # grpc_server_port_https: 8443
+        # HTTP port of the grpc end-point
+        # grpc_server_port_http: 8080
+
+  # Development configuration options
+  # devel:
+    # Copy the caosdb-server jar from this location into the Docker container.
+    # Note that this is implemented by copying the file to
+    # custom/caosdb-server/target/, any file there will be overwritten.
+    # jar: /var/build/caosdb-server/0123abcd/target/caosdb-server-<version>-jar-with-dependencies.jar
+
+  # The following is for the very specific case of server-side scripts
+  # requiring additional Python packages that are not installed during
+  # the regular build process of LinkAhead. If additional packages are
+  # needed, list them below. Mind that only packages that can be
+  # installed by pip are supported.
+
+  # scripting:
+    # packages:
+
+    # Packages can be installed from PyPI or external git
+    # repositories. In this case, `mode: "pip"` has to be
+    # provided. `package` can be the package name in PyPI (possibly
+    # with a version specification, i.e., `my_package>=1.0`, or it
+    # can be the URL of a git repository of a Python
+    # package. Essentially, the command `pip3 install
+    # package_string` will be executed within LinkAhead.
+
+    # <package1_key>:
+      # mode: "pip"
+      # package: "<package_string>"
+
+    # Alternatively, local packages can be copied into LinkAhead and
+    # then be installed using pip. Here, `mode: "copy"` has to be
+    # provided. `path` specifies the path to the Python package on
+    # the host system. `package` is the name of the destination
+    # directory within the LinkAhead container into which the local
+    # package will be copied. After copying, a `pip3 install .` is
+    # run from within that directory.
+
+    # <package2_key>:
+      # mode: "copy"
+      # path: "/path/to/local/python/package"
+      # package: "<package_string>"