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caosdb
Software
CaosDB Crawler
Commits
af88bb22
Commit
af88bb22
authored
1 year ago
by
Florian Spreckelsen
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FIX: Typos
parent
41962a41
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!160
STY: styling
,
!143
ENH: HDF5 Converter
Pipeline
#47455
passed
1 year ago
Stage: info
Stage: setup
Stage: cert
Stage: style
Stage: test
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src/doc/converters.rst
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af88bb22
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@@ -235,7 +235,7 @@ HDF5 Converters
For treating `HDF5 Files
<https://docs.hdfgroup.org/hdf5/develop/_s_p_e_c.html>`_, there are in total
four indivdual converters corresponding to the internal structure of HDF5 files:
four indiv
i
dual converters corresponding to the internal structure of HDF5 files:
the :ref:`H5FileConverter` which opens the file itself and creates further
structure elements from HDF5 groups, datasets, and included multi-dimensional
arrays that are in turn treated by the :ref:`H5GroupConverter`, the
...
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@@ -260,7 +260,8 @@ metadata and their internal path within the HDF5 file. Users can thus query for
datasets and their arrays according to their metadata within LinkAhead and then
use the internal path information to access the dataset within the file
directly. The type of this record and the property for storing the internal path
need to be reflected in the datamodel. Using the default names, you would need a datamodel like
need to be reflected in the datamodel. Using the default names, you would need a
datamodel like
.. code-block:: yaml
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@@ -272,7 +273,7 @@ need to be reflected in the datamodel. Using the default names, you would need
although the names of both property and record type can be configured within the
cfood definition.
A simple example of a cfood definiton for HDF5 files can be found in the `unit
A simple example of a cfood definit
i
on for HDF5 files can be found in the `unit
tests
<https://gitlab.com/linkahead/linkahead-crawler/-/blob/main/unittests/h5_cfood.yml?ref_type=heads>`_
and shows how the individual converters are used in order to crawl a `simple
...
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@@ -286,7 +287,7 @@ H5FileConverter
This is an extension of the
:py:class:`~caoscrawler.converters.SimpleFileConverter` class. It opens the HDF5
file and creates children for any contained group or dataset. Additionaly, the
file and creates children for any contained group or dataset. Additional
l
y, the
root-level attributes of the HDF5 file are accessible as children.
H5GroupConverter
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