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caosdb
Software
CaosDB Crawler
Commits
9249b510
Commit
9249b510
authored
2 years ago
by
Florian Spreckelsen
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WIP: Begin dataset converter class
parent
b94d7e5f
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!160
STY: styling
,
!143
ENH: HDF5 Converter
Pipeline
#37499
passed
2 years ago
Stage: info
Stage: setup
Stage: cert
Stage: style
Stage: test
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src/caoscrawler/hdf5_converter.py
+49
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src/caoscrawler/hdf5_converter.py
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src/caoscrawler/hdf5_converter.py
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View file @
9249b510
...
...
@@ -87,3 +87,52 @@ class H5FileConverter(SimpleFileConverter):
children
.
extend
(
__convert_attributes
(
ff
))
return
children
class
H5GroupConverter
(
DictElementConverter
):
def
typecheck
(
self
,
element
:
StructureElement
):
return
isinstance
(
element
,
H5GroupElement
)
def
create_children
(
self
,
generalStore
:
GeneralStore
,
element
:
StructureElement
):
if
not
isinstance
(
element
.
value
,
h5py
.
Group
):
raise
ValueError
(
"
create_children should have been called with a HDF5 Group object.
"
)
children
=
[]
for
name
,
value
in
element
.
value
.
items
():
children
.
append
(
__convert_h5_elements
(
value
,
name
))
children
.
append
(
self
.
_create_children_from_dict
(
element
.
value
.
attrs
))
return
children
class
H5DatasetConverter
(
DictElementConverter
):
def
typecheck
(
self
,
element
:
StructureElement
):
return
isinstance
(
element
,
H5DatasetElement
)
def
create_children
(
self
,
generalStore
:
GeneralStore
,
element
:
StructureElement
):
if
not
isinstance
(
element
.
value
,
h5py
.
Dataset
):
raise
ValueError
(
"
create_children should have been called with a HDF5 Dataset object
"
)
return
self
.
_create_children_from_dict
(
element
.
value
.
attrs
)
def
create_records
(
self
,
values
:
GeneralStore
,
records
:
RecordStore
,
element
:
StructureElement
):
keys_modified
=
[]
# TODO: Create the Dataset Record that holds the reference to the HDF5
# file and its internal path to the dataset.
keys_modified
.
append
(
super
().
create_records
(
values
,
records
,
element
))
return
keys_modified
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