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caosdb
Software
CaosDB Crawler
Commits
5414650b
Commit
5414650b
authored
9 months ago
by
Florian Spreckelsen
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MAINT: Rename `h5_crawler` back to `h5-crawler`
parent
f1917c55
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3 merge requests
!178
FIX: #96 Better error output for crawl.py script.
,
!172
MAINT: Rename `h5_crawler` back to `h5-crawler`
,
!171
sav/spss converter
Pipeline
#52183
passed
9 months ago
Stage: info
Stage: setup
Stage: cert
Stage: style
Stage: test
Changes
4
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4 changed files
.docker/Dockerfile
+1
-1
1 addition, 1 deletion
.docker/Dockerfile
.gitlab-ci.yml
+2
-2
2 additions, 2 deletions
.gitlab-ci.yml
setup.cfg
+1
-1
1 addition, 1 deletion
setup.cfg
src/doc/converters.rst
+7
-7
7 additions, 7 deletions
src/doc/converters.rst
with
11 additions
and
11 deletions
.docker/Dockerfile
+
1
−
1
View file @
5414650b
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@@ -34,7 +34,7 @@ RUN rm -r /git/.git
# Install pycaosdb.ini for the tests
RUN
mv
/git/.docker/tester_pycaosdb.ini /git/integrationtests/pycaosdb.ini
RUN
cd
/git/
&&
pip3
install
.[h5
_
crawler,spss]
RUN
cd
/git/
&&
pip3
install
.[h5
-
crawler,spss]
WORKDIR
/git/integrationtests
# wait for server,
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.gitlab-ci.yml
+
2
−
2
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5414650b
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...
@@ -131,7 +131,7 @@ unittest_py3.8:
# TODO: Use f-branch logic here
-
pip install git+https://gitlab.indiscale.com/caosdb/src/caosdb-pylib.git@dev
-
pip install git+https://gitlab.indiscale.com/caosdb/src/caosdb-advanced-user-tools.git@dev
-
pip install .[h5
_
crawler,spss]
-
pip install .[h5
-
crawler,spss]
# actual test
-
caosdb-crawler --help
-
pytest --cov=caosdb -vv ./unittests
...
...
@@ -168,7 +168,7 @@ unittest_py3.13:
# TODO: Use f-branch logic here
-
pip install git+https://gitlab.indiscale.com/caosdb/src/caosdb-pylib.git@dev
-
(! pip install git+https://gitlab.indiscale.com/caosdb/src/caosdb-advanced-user-tools.git@dev)
-
(! pip install .[h5
_
crawler,spss])
-
(! pip install .[h5
-
crawler,spss])
# actual test
-
(! caosdb-crawler --help)
-
(! pytest --cov=caosdb -vv ./unittests)
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setup.cfg
+
1
−
1
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5414650b
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@@ -44,7 +44,7 @@ console_scripts =
csv_to_datamodel
=
caoscrawler.scripts.generators:csv_to_datamodel_main
[options.extras_require]
h5
_
crawler
=
h5
-
crawler
=
h5py
>=
3.8
numpy
spss
=
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src/doc/converters.rst
+
7
−
7
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5414650b
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@@ -260,13 +260,13 @@ HDF5 Converters
For treating `HDF5 Files
<https://docs.hdfgroup.org/hdf5/develop/_s_p_e_c.html>`_, there are in total
four individual converters corresponding to the internal structure of HDF5
files:
the :ref:`H5FileConverter` which opens the file itself and creates
further
structure elements from HDF5 groups, datasets, and included
multi-dimensional
arrays that are in turn treated by the
:ref:`H5GroupConverter`, the
:ref:`H5
Dataset
Converter`,
and
the :ref:`H5
Ndarray
Converter`,
respectively. You
need to install the LinkAhead crawler with its optional ``h5crawler`` dependency
for using these converters.
four individual converters corresponding to the internal structure of HDF5
files:
the :ref:`H5FileConverter` which opens the file itself and creates
further
structure elements from HDF5 groups, datasets, and included
multi-dimensional
arrays that are in turn treated by the
:ref:`H5
Group
Converter`, the :ref:`H5
Dataset
Converter`,
and the
:ref:`H5NdarrayConverter`, respectively. You need to install the LinkAhead
crawler with its optional ``h5-crawler`` dependency
for using these converters.
The basic idea when crawling HDF5 files is to treat them very similar to
:ref:`dictionaries <DictElement Converter>` in which the attributes on root,
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