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test_issues_server.py 48.77 KiB
# -*- coding: utf-8 -*-
# This file is a part of the CaosDB Project.
#
# Copyright (c) 2020 - 2022 IndiScale GmbH <info@indiscale.com>
# Copyright (c) 2022 Daniel Hornung <d.hornung@indiscale.com>
# Copyright (c) 2020 Florian Spreckelsen <f.spreckelsen@indiscale.com>
# Copyright (c) 2021 - 2022 Timm Fitschen <t.fitschen@indiscale.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
"""Tests for issues on gitlab.com, project caosdb-server."""
import math
import os
import tempfile
import time
import caosdb as db
from caosdb import administration as admin
import pytest
from caosdb.exceptions import TransactionError, HTTPClientError
CURATOR_ROLE = "curator"
def setup_module():
db.configure_connection()
try:
db.execute_query("FIND ENTITY WITH ID > 99").delete()
except Exception as delete_exc:
print(delete_exc)
try:
admin._delete_user("TestUser")
except Exception as delete_exc:
print(delete_exc)
try:
admin._delete_role(CURATOR_ROLE)
except Exception as delete_exc:
print(delete_exc)
def setup_function(function):
"""No setup required."""
setup_module()
def teardown_function(function):
"""Deleting entities again."""
setup_module()
# ########################### Issue tests start here #####################
def test_issue_39():
"""Query Language Bug - quotes around year
Test for https://gitlab.com/caosdb/caosdb-server/-/issues/39
"""
date_str = "2020-01-01"
prop_name = "Test_Date"
db.Property(name=prop_name, datatype=db.DATETIME).insert()
db.RecordType(name="Test_Type").add_property(name=prop_name).insert()
db.Record(name="Test_Record").add_parent(name="Test_Type").add_property(
name=prop_name, value=date_str).insert()
# Quotes around years should work in the query
ent = db.execute_query("FIND entity WITH A Test_Date IN \"2020\"",
unique=True)
assert ent.get_property(prop_name).value == date_str
# This should raise a transaction error
with pytest.raises(TransactionError):
db.execute_query("FIND entity WITH A Test_Date IN \"abcd\"")
@pytest.mark.xfail(reason="to be fixed in server repo")
def test_issue_62():
"""datatype is not changed when recordtype name changes
Tests for https://gitlab.com/caosdb/caosdb-server/-/issues/62
"""
db.RecordType(name="Test_RTA").insert()
db.Property(name="Test_Prop", datatype="Test_RTA").insert()
db.Record(name="Test_Record").add_parent(
name="Test_RTA").add_property(name="Test_Prop").insert()
# rename Test_RTA to Test_RTB
rtb = db.execute_query("FIND RecordType Test_RTA", unique=True)
rtb.name = "Test_RTB"
rtb.update()
# renaming has to be reflected in Test_Record and Test_Prop
rec = db.execute_query("FIND Record Test_Record", unique=True)
assert rec.parents[0].name == rtb.name
prop = db.execute_query("FIND Property Test_Prop", unique=True)
assert prop.datatype == rtb.name # fails; datatype not updated
# Can't use Test_RTA as datatype anymore
prop2 = db.Property(name="Test_Prop2", datatype="Test_RTA")
with pytest.raises(TransactionError):
prop2.insert()
def test_issue_85_a():
"""SQLIntegrityConstraintViolationException for special inheritance patterns.
Tests for https://gitlab.com/caosdb/caosdb-server/-/issues/85
"""
A = db.RecordType(name="A")
B = db.RecordType(name="B")
C = db.RecordType(name="C")
B.add_parent(A)
# This order is important for the test to fail.
C.add_parent(B)
C.add_parent(C)
C.add_parent(A)
c = db.Container()
# c.extend([C, B, A]) # worked before #86 was fixed
# c.extend([C, A, B]) # worked before #86 was fixed
c.extend([B, C, A]) # insert() failed before #86 was fixed
c.insert() # Raised java.sql.SQLIntegrityConstraintViolationException:
# # Duplicate entry '12345-12346-12345' for key 'PRIMARY'
def test_issue_85_b():
"""SQLIntegrityConstraintViolationException for special inheritance patterns.
Tests for https://gitlab.com/caosdb/caosdb-server/-/issues/85
"""
A = db.RecordType(name="A")
B = db.RecordType(name="B")
C = db.RecordType(name="C")
A.insert()
B.insert()
C.insert()
B.add_parent(A)
B.update()
C.add_parent(B)
C.update()
C.add_parent(C)
C.update()
C.add_parent(A)
C.update() # Failed at this step
@pytest.mark.local_server
def test_issue_99():
"""Checksum updating failed with versioning enabled.
"""
# Using files in extroot, because this allows us to update the file
# content from the outside.
local_dir = os.path.join(db.get_config().get("IntegrationTests",
"test_files.test_insert_files_in_dir.local"),
"test_issue_99")
docker_dir = os.path.join(db.get_config().get("IntegrationTests",
"test_files.test_insert_files_in_dir.server"),
"test_issue_99")
os.makedirs(local_dir, exist_ok=True)
with tempfile.NamedTemporaryFile(dir=local_dir) as file_99:
# Create File entity in CaosDB
file_99.write("test 99\n".encode())
os.fchmod(file_99.fileno(), 0o744) # make the file world readable
cont = db.Container()
cont.insert(unique=False, raise_exception_on_error=False,
flags={"InsertFilesInDir": docker_dir})
dbfile = cont[0]
# Checksum should exist after a short time
time.sleep(0.1)
dbfile.retrieve()
assert dbfile.checksum is not None
def test_issue_110():
"""query ignores ID: FIND MusicalInstrument which is referenced by Analysis with ID=124 """
cont = db.Container()
A = db.RecordType(name="TypeA")
B = db.RecordType(name="TypeB")
prop = db.Property(name="prop_ba", datatype=db.REFERENCE)
# Referenced Records
a1 = db.Record().add_parent(A)
a2 = db.Record().add_parent(A)
# Referencing Records
b1 = db.Record().add_parent(B).add_property(prop, value=a1)
b2 = db.Record().add_parent(B).add_property(prop, value=a2)
cont.extend([A, B, prop, a1, a2, b1, b2])
cont.insert()
id_b1 = b1.id
query = "FIND TypeA WHICH IS REFERENCED BY TypeB WITH ID={}".format(id_b1)
print(query)
result = db.execute_query(query)
print(result)
assert len(result) == 1
print(result[0])
print(a1)
assert result[0].id == a1.id
def test_issue_120():
"""Editing entities that were created with a no longer existing user leads
to a server error.
The server should throw an error when CHECK_ENTITY_ACL_ROLES_MODE=MUST,
otherwise a warning.
"""
# insert an entity
entity = db.RecordType("TestRT").insert(flags={"ACL": None})
db.administration.set_server_property("CHECK_ENTITY_ACL_ROLES_MODE",
"SHOULD")
# update with non-existing user, realm and role
entity.deny(
realm="CaosDB",
username="NON_EXISTING_USER",
permission="USE:AS_REFERENCE")
entity.update(flags={"ACL": None})
assert entity.messages["Warning", 1104][0] == "User role does not exist."
entity.deny(
realm="NON_EXISTING_REALM",
username="NON_EXISTING_USER",
permission="USE:AS_REFERENCE")
entity.update(flags={"ACL": None})
assert entity.messages["Warning", 1104][0] == "User role does not exist."
entity.deny(
role="ALSO_NON_EXISTING_ROLE",
permission="USE:AS_REFERENCE")
entity.update(flags={"ACL": None})
assert entity.messages["Warning", 1104][0] == "User role does not exist."
def test_issue_134():
"""multiple white space characters after `FROM`"""
db.execute_query("SELECT pname FROM ename")
def test_issue_131():
"""white space before unit with strange character"""
rt = db.RecordType(name="TestType").insert()
prop = db.Property(name="TestProp", datatype=db.INTEGER, unit="€").insert()
rec = db.Record(name="TestRecord").add_property(
name=prop.name, value=101, unit="€")
rec.add_parent(rt)
rec.insert()
result_ids = [ent.id for ent in db.execute_query(
"FIND Entity WITH {} > 100 €".format(prop.name))]
assert rec.id in result_ids
result_ids = [ent.id for ent in db.execute_query(
"FIND Entity WITH {} > 100.5 €".format(prop.name))]
assert rec.id in result_ids
def test_issue_154_no_versioning():
""" FIND MusicalInstrument WITH Manufacturer = "Antonio Stradivari" and
FIND MusicalInstrument WITH Manufacturer != "Antonio Stradivari" """
rt_man = db.RecordType("Manufacturer")
rt_inst = db.RecordType("MusicalInstrument").add_property(rt_man)
rec_man = db.Record("Antonio Stradivari").add_parent("Manufacturer")
rec_man2 = db.Record("The other guy").add_parent("Manufacturer")
rec_inst = db.Record("Violin").add_parent(
"MusicalInstrument").add_property("Manufacturer", rec_man)
rec_inst2 = db.Record("Guitar").add_parent(
"MusicalInstrument").add_property("Manufacturer", rec_man2)
rec_inst3 = db.Record("Broken Record").add_parent("MusicalInstrument")
c = db.Container().extend([rt_man, rt_inst, rec_man, rec_inst, rec_man2,
rec_inst2, rec_inst3]).insert()
assert "Violin" not in [e.name for e in db.execute_query(
"FIND RECORD MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")]
assert "Violin" not in [e.name for e in db.execute_query(
"FIND RECORD MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")]
assert len(db.execute_query("FIND ENTITY MusicalInstrument")) == 4
assert len(db.execute_query("FIND RECORD MusicalInstrument")) == 3
assert len(db.execute_query(
"FIND ENTITY MusicalInstrument WITH Manufacturer")) == 3
assert len(db.execute_query(
"FIND RECORD MusicalInstrument WITH Manufacturer")) == 2
assert rec_inst.id == db.execute_query(
"FIND ENTITY MusicalInstrument WITH Manufacturer = 'Antonio Stradivari'",
unique=True).id
assert len(db.execute_query(
"FIND ENTITY MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")) == 3
assert len(db.execute_query(
"FIND RECORD MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")) == 2
assert len(db.execute_query(
"FIND ENTITY MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")) == 1
assert len(db.execute_query(
"FIND RECORD MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")) == 1
def test_issue_154_with_versioning():
""" FIND MusicalInstrument WITH Manufacturer = "Antonio Stradivari" and
FIND MusicalInstrument WITH Manufacturer != "Antonio Stradivari" """
rt_man = db.RecordType("Manufacturer")
rt_inst = db.RecordType("MusicalInstrument").add_property(rt_man)
rec_man = db.Record("Antonio Stradivari").add_parent("Manufacturer")
rec_man2 = db.Record("The other guy").add_parent("Manufacturer")
rec_inst = db.Record("Violin").add_parent(
"MusicalInstrument").add_property("Manufacturer", rec_man)
rec_inst2 = db.Record("Guitar").add_parent(
"MusicalInstrument").add_property("Manufacturer", rec_man2)
rec_inst3 = db.Record("Broken Record").add_parent("MusicalInstrument")
db.Container().extend([rt_man, rt_inst, rec_man,
rec_inst, rec_man2, rec_inst2, rec_inst3]).insert()
assert "Violin" not in [e.name for e in db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")]
assert "Violin" not in [e.name for e in db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")]
assert len(db.execute_query("FIND ANY VERSION OF ENTITY MusicalInstrument")) == 4
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument")) == 3
assert len(db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH Manufacturer")) == 3
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH Manufacturer")) == 2
assert rec_inst.id == db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH Manufacturer = 'Antonio Stradivari'",
unique=True).id
assert len(db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")) == 3
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")) == 2
assert len(db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")) == 1
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")) == 1
# now, some updates
rt_man.description = "Updated Description"
rt_inst.description = "Updated Description"
rec_man.description = "Updated Description"
rec_man2.description = "Updated Description"
rec_inst.description = "Updated Description"
rec_inst2.description = "Updated Description"
rec_inst3.description = "Updated Description"
db.Container().extend([rt_man, rt_inst, rec_man,
rec_inst, rec_man2, rec_inst2, rec_inst3]).update()
assert "Violin" not in [e.name for e in db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")]
assert "Violin" not in [e.name for e in db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")]
assert len(db.execute_query("FIND ANY VERSION OF ENTITY MusicalInstrument")) == 8
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument")) == 6
assert len(db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH Manufacturer")) == 6
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH Manufacturer")) == 4
assert len(db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH Manufacturer = 'Antonio Stradivari'")) == 2
assert len(db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")) == 6
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH NOT Manufacturer = 'Antonio Stradivari'")) == 4
assert len(db.execute_query(
"FIND ANY VERSION OF ENTITY MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")) == 2
assert len(db.execute_query(
"FIND ANY VERSION OF RECORD MusicalInstrument WITH Manufacturer != 'Antonio Stradivari'")) == 2
def test_issue_127():
"""https://gitlab.com/caosdb/caosdb-server/-/issues/127"""
p = db.Property(
name="TestDoubleProperty",
datatype=db.LIST(
db.DOUBLE)).insert()
rt = db.RecordType(name="TestRecordType").add_property(name="TestDoubleProperty",
value=["nan"]).insert()
test1 = db.execute_query("FIND ENTITY TestRecordType", unique=True)
assert math.isnan(test1.get_property("TestDoubleProperty").value[0])
test2 = db.execute_query(
"FIND ENTITY TestRecordType WITH TestDoubleProperty = NaN", unique=True)
assert math.isnan(test1.get_property("TestDoubleProperty").value[0])
def test_issue_170():
"""update scalar data type to list data type"""
p = db.Property(name="TestProp1", datatype=db.LIST(db.INTEGER))
p.value = [1, 2]
p.insert()
p2 = db.execute_query("FIND ENTITY TestProp1", unique=True)
assert p2.datatype == db.LIST(db.INTEGER)
assert p2.value == [1, 2]
p.description = "TestDescription"
p.update() # this failed
p2 = db.execute_query("FIND ENTITY TestProp1", unique=True)
assert p2.datatype == db.LIST(db.INTEGER)
assert p2.value == [1, 2]
assert p2.description == "TestDescription"
p = db.Property(name="TestProp2", datatype=db.DOUBLE)
p.insert()
p.datatype = db.LIST(db.INTEGER)
p.update() # this worked because no value yet
p2 = db.execute_query("FIND ENTITY TestProp2", unique=True)
assert p2.datatype == db.LIST(db.INTEGER)
p.value = [1, 2]
p.update() # this failed
p2 = db.execute_query("FIND ENTITY TestProp2", unique=True)
assert p2.datatype == db.LIST(db.INTEGER)
assert p2.value == [1, 2]
p = db.Property(name="TestProp3", datatype=db.DOUBLE)
p.insert()
p.datatype = db.LIST(db.INTEGER)
p.value = [1, 2]
p.update() # this failed
p2 = db.execute_query("FIND ENTITY TestProp3", unique=True)
assert p2.datatype == db.LIST(db.INTEGER)
assert p2.value == [1, 2]
def test_issue_181():
"""https://gitlab.indiscale.com/caosdb/src/caosdb-server/-/issues/181"""
rt = db.RecordType("TestRT").insert()
assert len(db.execute_query("FIND RECORDTYPE TestRT")) == 1
assert len(db.execute_query(
"FIND RECORDTYPE TestRT WHICH HAS BEEN UPDATED TODAY")) == 0
rt.description = "New description"
rt.update()
assert len(db.execute_query(
"FIND RECORDTYPE TestRT WHICH HAS BEEN UPDATED TODAY")) == 1
def test_issue_183():
"""No reasonable error when using bad datetime format.
https://gitlab.indiscale.com/caosdb/src/caosdb-server/-/issues/183
"""
# Date YYYY-MM-ddThh:mm:ss
assert db.Property(name="TestDateTime", datatype=db.DATETIME,
value="2015-05-05T20:15:00").insert().id is not None
with pytest.raises(db.TransactionError) as cm:
# Date YYYY-MM-ddThh:mm
db.Property(name="TestDateTime2", datatype=db.DATETIME,
value="2015-05-05T20:15").insert()
assert cm.value.errors[0].msg == ("Cannot parse value to datetime format "
"(yyyy-mm-dd'T'hh:mm:ss[.fffffffff][TimeZone]).")
def test_issue_130():
"""Test select queries where names contain spaces
https://gitlab.com/caosdb/caosdb-server/-/issues/130
However, this bug was actually about quotation marks
"""
db.RecordType(name="TestRT_A").insert()
r1 = db.Record("ReferencedRecord").add_parent("TestRT_A").insert()
p1 = db.Property(name="TestWrapper", datatype="TestRT_A").insert()
p2 = db.Property(
name="TestWrapper With Spaces",
datatype="TestRT_A").insert()
db.RecordType(name="TestRT_B"
).add_property(name="TestWrapper"
).add_property("TestWrapper With Spaces"
).insert()
db.Record().add_parent("TestRT_B"
).add_property("TestWrapper", value=r1
).add_property("TestWrapper With Spaces",
value=r1
).insert()
query = "SELECT TestWrapper FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(("TestWrapper"))
assert row == [(r1.id,)]
query = "SELECT TestWrapper FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(("TestWrapper", "id"))
assert row == [(p1.id,)]
query = "SELECT 'TestWrapper' FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(("TestWrapper", "id"))
assert row == [(p1.id,)]
query = "SELECT TestWrapper FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(("TestWrapper", "name"))
assert row == [("TestWrapper",)]
query = "SELECT TestWrapper.name FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(("TestWrapper", "name"))
assert row == [("ReferencedRecord",)]
query = "SELECT 'TestWrapper.name' FROM RECORD TestRT_B"
rec = db.execute_query(query, unique=True)
assert len(rec.properties) == 0
query = "SELECT 'TestWrapper'.name FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(("TestWrapper", "name"))
assert row == [("ReferencedRecord",)]
query = "SELECT TestWrapper With Spaces FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(
("TestWrapper With Spaces"))
assert row == [(r1.id,)]
query = "SELECT TestWrapper With Spaces FROM RECORD TestRT_B"
row = db.execute_query(query).get_property_values(
("TestWrapper With Spaces", "id"))
assert row == [(p2.id,)]
query = 'SELECT TestWrapper With Spaces FROM RECORD TestRT_B'
row = db.execute_query(query).get_property_values(
("TestWrapper With Spaces", "name"))
assert row == [("TestWrapper With Spaces",)]
query = 'SELECT "TestWrapper With Spaces" FROM RECORD TestRT_B'
row = db.execute_query(query).get_property_values(
("TestWrapper With Spaces", "name"))
assert row == [("TestWrapper With Spaces",)]
query = 'SELECT TestWrapper With Spaces.name FROM RECORD TestRT_B'
row = db.execute_query(query).get_property_values(
("TestWrapper With Spaces", "name"))
assert row == [("ReferencedRecord",)]
query = 'SELECT "TestWrapper With Spaces".name FROM RECORD TestRT_B'
row = db.execute_query(query).get_property_values(
("TestWrapper With Spaces", "name"))
assert row == [("ReferencedRecord",)]
def test_issue_132():
"""Query: Parenthesis around subproperties.
https://gitlab.com/caosdb/caosdb-server/-/issues/132
"""
db.RecordType("TestRT").insert()
db.RecordType("TestRT_Foo").insert()
db.Property("TestP_Bar", datatype=db.TEXT).insert()
db.Property("TestP_Baz", datatype=db.TEXT).insert()
rt1 = db.Record().add_parent("TestRT_Foo").add_property(
"TestP_Bar", "val1").add_property(
"TestP_Baz", "the other baz").insert()
rt2 = db.Record().add_parent("TestRT").add_property(
"TestP_Baz", "val2").add_property(
"TestRT_Foo", rt1).insert()
query = "FIND RECORD TestRT_Foo"
assert db.execute_query(query, unique=True).id == rt1.id
query = "FIND RECORD TestRT"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH TestRT_Foo"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH TestRT_Foo.TestP_Bar"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH TestRT_Foo.TestP_Bar = val1"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH (TestRT_Foo.TestP_Bar = val1)"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH ( TestRT_Foo.TestP_Bar = val1 )"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH (TestRT_Foo.TestP_Bar = val1) AND TestP_Baz = val2"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH (TestRT_Foo WITH (TestP_Bar = val1 AND TestP_Baz = 'the other baz')) AND TestP_Baz = val2"
assert db.execute_query(query, unique=True).id == rt2.id
query = "FIND RECORD TestRT WITH TestRT_Foo WITH (TestP_Bar = val1 AND TestP_Baz = 'the other baz') AND TestP_Baz = val2"
assert db.execute_query(query, unique=True).id == rt2.id
# this one has the wront scope of the conjunction.
query = "FIND RECORD TestRT WITH TestRT_Foo.TestP_Bar = val1 AND TestP_Baz = 'the other one'"
assert len(db.execute_query(query)) == 0
def test_issue_217():
"""Server gets list property datatype wrong if description is updated."""
# @review Florian Spreckelsen 2022-03-15
rt = db.RecordType(name="TestRT").insert()
# prop = db.Property(name="LP", datatype=db.LIST("TestRT")).insert()
r = db.Record().add_parent(id=rt.id).add_property(name=rt.name,
datatype=db.LIST(
db.INTEGER),
value=[10001, 10002])
assert r.get_property(rt.name).datatype == db.LIST(db.INTEGER)
assert r.get_property(rt.name).value == [10001, 10002]
r.insert()
assert r.get_property(rt.name).datatype == db.LIST(db.INTEGER)
assert r.get_property(rt.name).value == [10001, 10002]
r.retrieve()
assert r.get_property(rt.name).datatype == db.LIST(db.INTEGER)
assert r.get_property(rt.name).value == [10001, 10002]
r.retrieve(flags={"cache": "false"})
assert r.get_property(rt.name).datatype == db.LIST(db.INTEGER)
assert r.get_property(rt.name).value == [10001, 10002]
r.description = "Changed description"
r.update()
assert r.get_property(rt.name).datatype == db.LIST(db.INTEGER)
assert r.get_property(rt.name).value == [10001, 10002]
# This line fails in the bug report with invalid XML.
r.retrieve()
assert r.get_property(rt.name).datatype == db.LIST(db.INTEGER)
assert r.get_property(rt.name).value == [10001, 10002]
def test_issue_217_2():
"""Server gets overridden name of property wrong when the description of record is being updated."""
# @review Florian Spreckelsen 2022-03-15
rt = db.RecordType(name="TestRT").insert()
# prop = db.Property(name="LP", datatype=db.LIST("TestRT")).insert()
overridden_name = "TestRT-overridden"
r = db.Record().add_parent(id=rt.id).add_property(name=overridden_name,
id=rt.id)
assert r.get_property(overridden_name) is not None
assert r.get_property(overridden_name).id == rt.id
r.insert()
assert r.get_property(overridden_name) is not None
assert r.get_property(overridden_name).id == rt.id
r.retrieve()
assert r.get_property(overridden_name) is not None
assert r.get_property(overridden_name).id == rt.id
r.retrieve(flags={"cache": "false"})
assert r.get_property(overridden_name) is not None
assert r.get_property(overridden_name).id == rt.id
r.description = "Changed description" # change description of the record
r.update()
assert r.get_property(overridden_name) is not None
assert r.get_property(overridden_name).id == rt.id
r.retrieve()
assert r.get_property(overridden_name) is not None
assert r.get_property(overridden_name).id == rt.id
def test_issue_217_3():
"""Server gets overridden description of property wrong when the description of record is being updated."""
# @review Florian Spreckelsen 2022-03-15
rt = db.RecordType(name="TestRT", description="Desc").insert()
# prop = db.Property(name="LP", datatype=db.LIST("TestRT")).insert()
r = db.Record().add_parent(id=rt.id).add_property(description="Desc-overridden",
id=rt.id)
r.insert()
assert r.get_property(rt.name).id == rt.id
assert r.get_property(rt.name).description == "Desc-overridden"
r.retrieve()
assert r.get_property(rt.name).id == rt.id
assert r.get_property(rt.name).description == "Desc-overridden"
r.retrieve(flags={"cache": "false"})
assert r.get_property(rt.name).id == rt.id
assert r.get_property(rt.name).description == "Desc-overridden"
r.description = "Changed description" # change description of the record
r.update()
assert r.get_property(rt.name).id == rt.id
assert r.get_property(rt.name).description == "Desc-overridden"
r.retrieve()
assert r.get_property(rt.name).id == rt.id
assert r.get_property(rt.name).description == "Desc-overridden"
def test_issue_221():
"""Unknown error during update of property leaving out datatype"""
rt = db.RecordType("A")
r = db.Record()
r.add_parent(rt)
p = db.Property(name="B", datatype=db.INTEGER)
r.add_property(name="B", value=5)
db.Container().extend([rt, r, p]).insert()
r2 = db.Record(id=r.id).retrieve()
r2.remove_property("B")
r2.add_property(p, value=7)
r2.update()
assert r2.get_property("B").value == 7
assert r2.get_property("B").datatype == db.INTEGER
assert r2.get_property("B").id == p.id
def test_134_1():
"""CQL: Subproperties are not recognized in list of references.
https://gitlab.com/caosdb/caosdb-server/-/issues/134
"""
p_lng = db.Property(name="longitude", datatype=db.DOUBLE).insert()
p_lat = db.Property(name="latitude", datatype=db.DOUBLE).insert()
rt_ev = db.RecordType(name="Event").add_property(
p_lng).add_property(p_lat).insert()
p_ev = db.Property(name="events", datatype=db.LIST(rt_ev)).insert()
rt_ds = db.RecordType(name="DataSet").add_property(p_ev).insert()
r_ev_1 = db.Record().add_parent("Event").add_property("longitude",
0.1).add_property("latitude",
0.1).insert()
r_ev_2 = db.Record().add_parent("Event").add_property("longitude",
0.2).add_property("latitude",
0.2).insert()
r_ds = db.Record().add_parent("DataSet").add_property(
"events", value=[r_ev_1, r_ev_2]).insert()
result = db.execute_query("SELECT events.latitude FROM RECORD DataSet",
unique=True)
print(result)
assert len(result.get_property("events").value) == 2
assert result.get_property("events").value[0].get_property(
"latitude").value == 0.1
assert result.get_property("events").value[1].get_property(
"latitude").value == 0.2
def test_134_2():
"""CQL: Subproperties are not recognized in list of references.
https://gitlab.com/caosdb/caosdb-server/-/issues/134
"""
p_lng = db.Property(name="longitude", datatype=db.DOUBLE).insert()
p_lat = db.Property(name="latitude", datatype=db.DOUBLE).insert()
rt_ev = db.RecordType(name="Event").add_property(
p_lng).add_property(p_lat).insert()
rt_ds = db.RecordType(name="DataSet").add_property(name="Event",
datatype=db.LIST(rt_ev)).insert()
r_ev_1 = db.Record().add_parent("Event").add_property("longitude",
0.1).add_property("latitude",
0.1).insert()
r_ev_2 = db.Record().add_parent("Event").add_property("longitude",
0.2).add_property("latitude",
0.2).insert()
r_ds = db.Record().add_parent("DataSet").add_property(
"Event", datatype=db.LIST(rt_ev), value=[r_ev_1, r_ev_2]).insert()
result = db.execute_query("SELECT Event.latitude FROM RECORD DataSet",
unique=True)
assert len(result.get_property("Event").value) == 2
assert result.get_property("Event").value[0].get_property(
"latitude").value == 0.1
assert result.get_property("Event").value[1].get_property(
"latitude").value == 0.2
def test_136():
"""Faulty creation of a multi-property when updating a non-list property
with a list value.
https://gitlab.com/caosdb/caosdb-server/-/issues/136
"""
# @author Florian Spreckelsen
# @date 2022-05-23
# Insert data model:
rt = db.RecordType(name="TestBug")
p = db.Property(name="TestBugProperty", datatype=db.INTEGER)
db.Container().extend([rt, p]).insert()
# Insert test record:
r = db.Record(name="TestRecord")
r.add_parent(rt)
r.add_property(p, value=18)
r.insert()
# Update the record:
test_r = db.Record(id=r.id).retrieve()
test_r.add_parent(rt)
test_r.add_property(id=p.id, value=[18, 12])
with pytest.raises(db.TransactionError) as err:
test_r.update()
te = err.value
assert te.has_error(db.UnqualifiedPropertiesError)
assert "This data type does not accept collections of values (e.g. Lists)" in str(te)
@pytest.mark.xfail(reason="Fix https://gitlab.com/caosdb/caosdb-pylib/-/issues/81")
def test_136_b():
"""Faulty creation of a multi-property when updating a non-list property
with a list value.
https://gitlab.com/caosdb/caosdb-server/-/issues/136
"""
# @author Florian Spreckelsen
# @date 2022-05-23
# Insert data model:
rt = db.RecordType(name="TestBug")
p = db.Property(name="TestBugProperty", datatype=db.TEXT)
db.Container().extend([rt, p]).insert()
# Insert test record:
r = db.Record(name="TestRecord")
r.add_parent(rt)
r.add_property(p, value="val1")
r.insert()
# Update the record:
test_r = db.Record(id=r.id).retrieve()
test_r.add_parent(rt)
test_r.add_property(id=p.id, value=["val1", "val2"])
with pytest.raises(db.TransactionError) as err:
test_r.update()
te = err.value
assert te.has_error(db.UnqualifiedPropertiesError)
assert "This data type does not accept collections of values (e.g. Lists)" in str(te)
def test_141():
"""Roles with `Grant(*)P` permissions still can't update other people's
entities."""
admin._insert_role(name=CURATOR_ROLE, description="Desc")
perms = admin._get_permissions(CURATOR_ROLE)
g = admin.PermissionRule(action="Grant", permission="*", priority=True)
d = admin.PermissionRule(action="Deny", permission="*", priority=True)
if g in perms:
perms.remove(g)
if d in perms:
perms.remove(d)
perms.add(g)
admin._set_permissions(CURATOR_ROLE, permission_rules=perms)
perms = admin._get_permissions(CURATOR_ROLE)
print(perms)
rt = db.RecordType(name="TestRT", description="Desc1").insert()
admin._insert_user(name="TestUser", password="Password1!", status="ACTIVE")
admin._set_roles(username="TestUser", roles=[CURATOR_ROLE])
db.configure_connection(username="TestUser", password_method="plain",
password="Password1!")
assert db.Info().user_info.name == "TestUser"
assert db.Info().user_info.roles == [CURATOR_ROLE]
rt.description = "Desc2"
rt.update()
assert rt.description == "Desc2"
# switch back to admin user
db.configure_connection()
assert db.execute_query("FIND ENTITY TestRT", unique=True).description == "Desc2"
def test_145():
"""Searching for large numbers results in wrong results if integer values
are used.
https://gitlab.com/caosdb/caosdb-server/-/issues/145
"""
db.Property("TestProp", datatype=db.TEXT).insert()
db.Property("TestPropInt", datatype=db.INTEGER).add_parent(
"TestProp").insert()
db.Property("TestPropDouble", datatype=db.DOUBLE).add_parent(
"TestProp").insert()
db.RecordType("TestRT").insert()
rec1 = db.Record("TestRec1").add_parent("TestRT").add_property(
"TestPropInt", 1_000_000_000).insert()
assert rec1.get_property("TestPropInt").value == 1_000_000_000
assert isinstance(rec1.get_property("TestPropInt").value, int)
rec2 = db.Record("TestRec2").add_parent("TestRT").add_property(
"TestPropDouble", 20_000_000_000).insert()
assert rec2.get_property("TestPropDouble").value == 20_000_000_000
assert isinstance(rec2.get_property("TestPropDouble").value, float)
assert db.execute_query(
"FIND TestRT WITH TestProp = 1000000000", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT WITH TestProp = 1000000000.0", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT WITH TestProp > 1000000000", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT WITH TestProp > 1000000000.0", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT WITH TestProp = 20000000000", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT WITH TestProp = 20000000000.0", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT WITH TestProp < 20000000000", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT WITH TestProp < 20000000000.0", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT WITH TestPropInt < 10000000000000000000000000000000000000000000000000000000000",
unique=True).id == rec1.id
@pytest.mark.xfail(reason="Fix https://gitlab.com/caosdb/caosdb-server/-/issues/147")
def test_147():
"""Searching for integer numbers results in wrong results if floats are used.
https://gitlab.com/caosdb/caosdb-server/-/issues/147
"""
db.Property("TestProp", datatype=db.TEXT).insert()
db.Property("TestPropInt", datatype=db.INTEGER).add_parent(
"TestProp").insert()
db.RecordType("TestRT1").insert()
db.RecordType("TestRT2").insert()
rec1 = db.Record("TestRec1").add_parent("TestRT1").add_property(
"TestPropInt", 1).insert()
assert rec1.get_property("TestPropInt").value == 1
assert isinstance(rec1.get_property("TestPropInt").value, int)
rec2 = db.Record("TestRec2").add_parent("TestRT2").add_property(
"TestPropInt", -2).insert()
# Find the records
assert db.execute_query(
"FIND TestRT1 WITH TestProp < 1.9", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp < 1.1", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp = 1.0", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp > 0.9", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp > 0.1", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp <= 1.9", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp <= 1.1", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp >= 0.9", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT1 WITH TestProp >= 0.1", unique=True).id == rec1.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp < -1.1", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp < -1.9", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp = -2.0", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp > -2.1", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp > 2.9", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp <= -1.1", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp <= -1.9", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp >= -2.1", unique=True).id == rec2.id
assert db.execute_query(
"FIND TestRT2 WITH TestProp >= 2.9", unique=True).id == rec2.id
# Don't find the records
assert len(db.execute_query("FIND TestRT1 WITH TestProp < 0.9")) == 0
assert len(db.execute_query("FIND TestRT1 WITH TestProp <= 0.9")) == 0
assert len(db.execute_query("FIND TestRT1 WITH TestProp > 1.1")) == 0
assert len(db.execute_query("FIND TestRT1 WITH TestProp >= 1.1")) == 0
assert len(db.execute_query("FIND TestRT2 WITH TestProp > -1.9")) == 0
assert len(db.execute_query("FIND TestRT2 WITH TestProp >= -1.9")) == 0
assert len(db.execute_query("FIND TestRT2 WITH TestProp < -2.1")) == 0
assert len(db.execute_query("FIND TestRT2 WITH TestProp <= -2.1")) == 0
# Smaller numbers, but querying across number types.
rec3 = db.Record("TestRec3").add_parent(
"TestRT").add_property("TestPropInt", 1).insert()
assert db.execute_query(
"FIND TestRT WITH TestPropInt < 2", unique=True).id == rec3.id
assert db.execute_query(
"FIND TestRT WITH TestPropInt < 2.5", unique=True).id == rec3.id
def test_140():
"""https://gitlab.com/caosdb/caosdb-server/-/issues/140"""
admin._insert_role(name=CURATOR_ROLE, description="Desc")
perms = admin._get_permissions(CURATOR_ROLE)
g = admin.PermissionRule(action="Grant", permission="TRANSACTION:*")
perms.add(g)
admin._set_permissions(CURATOR_ROLE, permission_rules=perms)
admin._insert_user(name="TestUser", password="Password1!", status="ACTIVE")
admin._set_roles(username="TestUser", roles=[CURATOR_ROLE])
core_model_deny_permissions = [
"DELETE",
"UPDATE:*",
"EDIT:ACL"
]
core_model_grant_permissions = [
"RETRIEVE:*",
"USE:*",
"UPDATE:PROPERTY:ADD"
]
prop = db.Property(name="TestProp", datatype=db.TEXT).insert()
rt = db.RecordType(name="TestRT").insert(flags={"ACL": None})
for d in core_model_deny_permissions:
# First deny s.th. later the "UPDATE:PROPERTY:ADD" permission can be granted explicitely
rt.deny(role=CURATOR_ROLE, permission=d)
rt.update_acl()
# retrieve again to be sure
rt.retrieve(flags={"ACL": None})
for g in core_model_grant_permissions:
rt.grant(role=CURATOR_ROLE, permission=g)
rt.update_acl()
print(rt.acl)
db.configure_connection(username="TestUser", password_method="plain",
password="Password1!")
assert db.Info().user_info.name == "TestUser"
assert db.Info().user_info.roles == [CURATOR_ROLE]
rt.add_property(prop)
rt.get_property("TestProp").value = "some value"
# this should succeed because the curator has UPDATE:PROPERTY:ADD
rt.update()
assert rt.get_property("TestProp").value == "some value"
rt.get_property("TestProp").value = "some other value"
with pytest.raises(TransactionError) as cm:
# this should fail because the curator doesn't have
# UPDATE:PROPERTY:REMOVE
rt.update()
assert cm.value.errors[0].msg == "You are not allowed to do this."
def test_142():
"""https://gitlab.com/caosdb/caosdb-server/-/issues/142"""
valid_names = [
"with.dot",
"with-hyphen",
"with_underbar",
"with0number",
"withAcapital",
".withleadingdot",
"Bwithleadingcapital",
"1withleadingnumber",
"_withleadingunderbar",
"withtrailingcapitalC",
"withtrailingnumber2",
"withtrailingunderbar_",
"withtrailinghyphen-",
"withtrailingdot.",
"4",
"_",
"D",
"d",
".",
]
invalid_names = [
"-",
"-leadinghyphen",
"",
"%",
"/",
"[asdf]",
"?",
'"',
]
for name in valid_names:
admin._insert_user(
name=name,
password="Password1!",
status="ACTIVE",
email=None,
entity=None)
admin._delete_user(name=name)
for name in invalid_names:
with pytest.raises(HTTPClientError) as cm:
admin._insert_user(
name=name,
password="Password1!",
status="ACTIVE",
email=None,
entity=None)
admin._delete_user(name=name)
assert cm.value.status == 400
assert cm.value.msg.startswith(
"The user name does not comply with the current policies for user names")
@pytest.mark.xfail(reason="Fix https://gitlab.com/caosdb/caosdb-server/-/issues/177")
def test_177():
db.RecordType("TestRT").insert()
db.RecordType("TestRT").insert(unique=False)
db.Property("TestProp", datatype=db.TEXT).insert()
db.RecordType("TestSubRT").add_property("TestProp").add_parent("TestRT").insert()
@pytest.mark.xfail(reason="Fix https://gitlab.com/caosdb/caosdb-server/-/issues/135")
def test_135():
db.RecordType("TestRT1").insert()
db.Property("TestProp", datatype=db.LIST("TestRT1")).insert()
r1 = db.Record().add_parent("TestRT1").insert()
r2 = db.Record().add_parent("TestRT1").add_property("TestProp", r1).insert()
assert len(db.execute_query("FIND ENTITY WHICH IS REFERENCED BY A TestRT1 AS TestProp")) == 1
def test_192():
"""Testing queries with Property by name.
See https://gitlab.com/caosdb/caosdb-server/-/issues/192
COUNT Record WHICH HAS price -> Results: 19
COUNT Record WHICH HAS Property price -> Results: 19
COUNT Record WITH price -> Results: 19
COUNT Record WITH Property price -> Results: 0
"""
db.Property(name="testprop", datatype=db.DOUBLE).insert()
db.RecordType(name="TestRT").add_property("testprop").insert()
db.Record(name="Rec1").add_parent("TestRT").add_property("testprop", value=3.1).insert()
query1 = "COUNT RECORD WHICH HAS testprop"
query2 = "COUNT RECORD WHICH HAS A testprop"
query3 = "COUNT RECORD WHICH HAS Property testprop"
query4 = "COUNT RECORD WHICH HAS A Property testprop"
query5 = "COUNT RECORD WITH testprop"
query6 = "COUNT RECORD WITH A testprop"
query7 = "COUNT RECORD WITH Property testprop"
query8 = "COUNT RECORD WITH A Property testprop"
count1 = db.execute_query(query1)
count2 = db.execute_query(query2)
count3 = db.execute_query(query3)
count4 = db.execute_query(query4)
count5 = db.execute_query(query5)
count6 = db.execute_query(query6)
count7 = db.execute_query(query7)
count8 = db.execute_query(query8)
assert count1 == 1
assert count2 == 1
assert count3 == 1
assert count4 == 1
assert count5 == 1
assert count6 == 1
assert count7 == 1
assert count8 == 1
def test_196a():
"""See https://gitlab.com/caosdb/caosdb-server/-/issues/196"""
admin._insert_role(name=CURATOR_ROLE, description="Desc")
perms = admin._get_permissions(CURATOR_ROLE)
g = admin.PermissionRule(action="Grant", permission="TRANSACTION:*")
perms.add(g)
admin._set_permissions(CURATOR_ROLE, permission_rules=perms)
admin._insert_user(name="TestUser", password="Password1!", status="ACTIVE")
admin._set_roles(username="TestUser", roles=[CURATOR_ROLE])
db.configure_connection(username="TestUser", password_method="plain",
password="Password1!")
# works
db.RecordType(name="TestRT1").insert()
db.Property(name="TestProp1", datatype=db.TEXT).insert()
# Deny TRANSACTION:INSERT:PROPERTY
db.configure_connection()
perms = admin._get_permissions(CURATOR_ROLE)
g = admin.PermissionRule(action="Deny", permission="TRANSACTION:INSERT:PROPERTY")
perms.add(g)
admin._set_permissions(CURATOR_ROLE, permission_rules=perms)
db.configure_connection(username="TestUser", password_method="plain",
password="Password1!")
# it is still allowed to insert a record type...
db.RecordType(name="TestRT2").insert()
# fails
with pytest.raises(TransactionError) as cm:
# this should fail because the curator doesn't have TRANSACTION:INSERT:PROPERTY
db.Property(name="TestProp2", datatype=db.TEXT).insert()
assert cm.value.errors[0].msg == "You are not allowed to do this."
@pytest.mark.parametrize("deny", ["TRANSACTION:INSERT:", "TRANSACTION:INSERT:*"])
def test_196b(deny):
"""Same as test_196a but we completely deny insertion."""
admin._insert_role(name=CURATOR_ROLE, description="Desc")
perms = admin._get_permissions(CURATOR_ROLE)
g = admin.PermissionRule(action="Grant", permission="TRANSACTION:*")
perms.add(g)
admin._set_permissions(CURATOR_ROLE, permission_rules=perms)
admin._insert_user(name="TestUser", password="Password1!", status="ACTIVE")
admin._set_roles(username="TestUser", roles=[CURATOR_ROLE])
db.configure_connection(username="TestUser", password_method="plain",
password="Password1!")
# works
db.RecordType(name="TestRT1").insert()
db.Property(name="TestProp1", datatype=db.TEXT).insert()
# Deny TRANSACTION:INSERT
db.configure_connection()
perms = admin._get_permissions(CURATOR_ROLE)
g = admin.PermissionRule(action="Deny", permission=deny)
perms.add(g)
admin._set_permissions(CURATOR_ROLE, permission_rules=perms)
db.configure_connection(username="TestUser", password_method="plain",
password="Password1!")
# fails (in contrast to test_196a)
with pytest.raises(TransactionError) as cm:
# this should fail because the curator doesn't have TRANSACTION:INSERT:RECORDTYPE
db.RecordType(name="TestRT2").insert()
assert cm.value.errors[0].msg == "You are not allowed to do this."
# fails
with pytest.raises(TransactionError) as cm:
# this should fail because the curator doesn't have TRANSACTION:INSERT:PROPERTY
db.Property(name="TestProp2", datatype=db.TEXT).insert()
assert cm.value.errors[0].msg == "You are not allowed to do this."