FIX CI

Summary

There were multiple problems that lead to a pipeline crash. The main issue was that entities were multiple times in the exported xml file.

Test Environment

CI/unittest should be fine.

Check List for the Author

Please, prepare your MR for a review. Be sure to write a summary and a focus and create gitlab comments for the reviewer. They should guide the reviewer through the changes, explain your changes and also point out open questions. For further good practices have a look at our review guidelines

• All automated tests pass
• Reference related Issues
• Up-to-date CHANGELOG.md
• Annotations in code (Gitlab comments)
  • Intent of new code
  • Problems with old code
  • Why this implementation?

Check List for the Reviewer

• I understand the intent of this MR
• All automated tests pass
• Up-to-date CHANGELOG.md
• The test environment setup works and the intended behavior is reproducible in the test environment
• In-code documentation and comments are up-to-date.
• Check: Are there spezifications? Are they satisfied?

For further good practices have a look at our review guidelines.

added 1 commit

• e56d5394 - up

Compare with previous version

changed the description

added 1 commit

• 9c59eb6e - up

Compare with previous version

marked the checklist item Up-to-date CHANGELOG.md as completed

marked the checklist item All automated tests pass as completed

marked the checklist item Reference related Issues as completed

marked the checklist item Annotations in code (Gitlab comments) as completed

assigned to @timm and unassigned @henrik

added 1 commit

• 6ccece40 - Cleanup

Compare with previous version

resolved all threads

integration tests fail with

Traceback (most recent call last):
  File "test_im_und_export.py", line 20, in <module>
    import_xml(os.path.join(directory.name, "caosdb_data.xml"), interactive=False)
  File "/home/tf/.local/lib/python/site-packages/caosadvancedtools/import_from_xml.py", line 97, in import_xml
    r = el.insert(unique=False)
  File "/home/tf/.local/lib/python/site-packages/caosdb/common/models.py", line 1078, in insert
    flags=flags)[0]
  File "/home/tf/.local/lib/python/site-packages/caosdb/common/models.py", line 3216, in insert
    raise_errors(self)
  File "/home/tf/.local/lib/python/site-packages/caosdb/common/models.py", line 4084, in raise_errors
    raise transaction_error
caosdb.exceptions.TransactionError: TransactionError: One or more entities are not qualified. None of them have been inserted/updated/deleted.
    +--| REASONS |--
    |  -> FILE (id: -324, name: 'datafile.dat') CAUSED     |EntityError: This target path does already exist.
    +----------------

marked the checklist item I understand the intent of this MR as completed