src/caosadvancedtools/structure_mapping.py

 #!/usr/bin/env python3
 
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2021 IndiScale GmbH <www.indiscale.com>
 # Copyright (C) 2021 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -18,9 +18,9 @@
 # You should have received a copy of the GNU Affero General Public License
 # along with this program. If not, see <https://www.gnu.org/licenses/>.
 
-import caosdb as db
-from caosdb.apiutils import resolve_reference
-from caosdb.common.utils import uuid
+import linkahead as db
+from linkahead.apiutils import resolve_reference
+from linkahead.common.utils import uuid
 
 from .cfood import (assure_has_description, assure_has_parent,
                     assure_property_is)

src/caosadvancedtools/table_converter.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2019 Henrik tom Wörden
 #
@@ -24,7 +24,7 @@ import argparse
 import re
 import sys
 
-import caosdb as db
+import linkahead as db
 import numpy as np
 import pandas as pd
 

src/caosadvancedtools/table_export.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Florian Sprecklelsen <f.spreckelsen@indiscale.com>
@@ -22,7 +22,7 @@
 #
 # ** end header
 #
-"""Collect optional and mandatory data from CaosDB records and prepare
+"""Collect optional and mandatory data from LinkAhead records and prepare
 them for an export as a table, e.g., for the export to metadata
 repositories.
 
@@ -31,7 +31,7 @@ from inspect import signature
 import json
 import logging
 
-import caosdb as db
+import linkahead as db
 
 FIND_FUNCTION = "find_func"
 QUERY = "query"
@@ -39,7 +39,7 @@ QUERY = "query"
 logger = logging.getLogger(__name__)
 
 
-class TableExportError(db.CaosDBException):
+class TableExportError(db.LinkAheadException):
     """Error that is raised in case of failing export, e.g., because of
     missing mandatory entries.
 

src/caosadvancedtools/utils.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -27,8 +27,8 @@ import logging
 import os
 import pathlib
 
-import caosdb as db
-from caosdb.exceptions import TransactionError
+import linkahead as db
+from linkahead.exceptions import TransactionError
 
 logger = logging.getLogger(__name__)
 

src/doc/Makefile

 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Daniel Hornung <d.hornung@indiscale.com>

src/doc/crawler.rst

@@ -241,7 +241,7 @@ Let’s look at the following Example:
 
    >>> # Example CFood
    >>> from caosadvancedtools.cfood import AbstractFileCFood, assure_has_property
-   >>> import caosdb as db
+   >>> import linkahead as db
    >>> 
    >>> class ExampleCFood(AbstractFileCFood):
    ...     @staticmethod

unittests/create_filetree.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2018 Research Group Biomedical Physics,
 # Max-Planck-Institute for Dynamics and Self-Organization Göttingen

unittests/test_base_table_exporter.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Florian Sprecklelsen <f.spreckelsen@indiscale.com>
@@ -28,7 +28,7 @@ tested without db connection.
 """
 import json
 import os
-import caosdb as db
+import linkahead as db
 from pytest import raises
 from caosadvancedtools import table_export as te
 

unittests/test_cache.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2019 Henrik tom Wörden
 #
@@ -26,7 +26,7 @@ from copy import deepcopy
 from tempfile import NamedTemporaryFile
 import sqlite3
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.cache import IdentifiableCache, cleanXML
 from lxml import etree
 

unittests/test_caosdbignore.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2022 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2022 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -34,12 +34,12 @@ from caosadvancedtools.loadFiles import compile_file_list, create_re_for_file_li
 BASEDIR = os.path.dirname(os.path.realpath(__file__))
 
 
-class Caosdbignore(unittest.TestCase):
+class Linkaheadignore(unittest.TestCase):
     def setUp(self):
         pass
 
     def test_compile(self):
-        files = compile_file_list(os.path.join(BASEDIR, "caosdbignore-example"),
+        files = compile_file_list(os.path.join(BASEDIR, "linkaheadignore-example"),
                                   os.path.join(BASEDIR, "data"))
         assert len(files) == 3
         assert os.path.join(BASEDIR, "data", "datatypes.xlsx") in files

unittests/test_cfood.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2018 Research Group Biomedical Physics,
 # Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -24,7 +24,7 @@
 import re
 import unittest
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.cfood import (AbstractCFood, AbstractFileCFood, CMeal,
                                      assure_has_parent, assure_has_property,
                                      assure_object_is_in_list,

unittests/test_crawler.py

 #!/usr/bin/env python
 # encoding: utf-8
 #
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -23,7 +23,7 @@
 import re
 import unittest
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.crawler import Crawler
 
 

unittests/test_data_model.py

 import unittest
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.models.data_model import DataModel
 from caosadvancedtools.models.parser import parse_model_from_string
 

unittests/test_generic_analysis.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2021 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2021 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -27,7 +27,7 @@
 module description
 """
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.serverside.generic_analysis import \
     check_referenced_script
 

unittests/test_json_schema_exporter.py

 #!/usr/bin/env python
 # encoding: utf-8
 #
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2023 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2023 Florian Spreckelsen <f.spreckelsen@indiscale.com>

unittests/test_json_schema_model_parser.py

 #
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2022 IndiScale GmbH <info@indiscale.com>
 # Copyright (C) 2022 Florian Spreckelsen <f.spreckelsen@indiscale.com>
@@ -24,7 +24,7 @@
 import os
 import pytest
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.models.parser import (parse_model_from_json_schema,
                                              JsonSchemaDefinitionError)
 
@@ -357,7 +357,7 @@ def test_name_property():
         broken = parse_model_from_json_schema(os.path.join(
             FILEPATH, "datamodel_name_wrong_type.schema.json"))
     assert str(err.value).startswith(
-        "The 'name' property must be string-typed, otherwise it cannot be identified with CaosDB's "
+        "The 'name' property must be string-typed, otherwise it cannot be identified with LinkAhead's "
         "name property.")
 
 

unittests/test_read_md_header.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2019 Henrik tom Wörden
 #
@@ -25,7 +25,7 @@ import unittest
 from copy import deepcopy
 from tempfile import NamedTemporaryFile
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.read_md_header import get_header
 
 

unittests/test_result_table_cfood.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2018 Research Group Biomedical Physics,
 # Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -32,7 +32,7 @@ import os
 import re
 import unittest
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.scifolder.result_table_cfood import ResultTableCFood
 
 

unittests/test_sss_helper.py

@@ -3,13 +3,13 @@ from email import message_from_file, policy
 from os import listdir, remove
 from os.path import abspath, dirname, exists, isfile, join
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.serverside.helper import (NameCollector, get_data,
                                                  get_file_via_download,
                                                  init_data_model,
                                                  parse_arguments, send_mail)
-from caosdb import RecordType, configure_connection, get_config
-from caosdb.connection.mockup import MockUpResponse, MockUpServerConnection
+from linkahead import RecordType, configure_connection, get_config
+from linkahead.connection.mockup import MockUpResponse, MockUpServerConnection
 from pytest import mark, raises
 
 
@@ -110,8 +110,8 @@ def test_get_file_via_download():
     # TODO test whether something ends up in the logger
     class NotThere(DummyFile):
         def download(*args, **kwargs):
-            raise db.CaosDBException()
-    with raises(db.CaosDBException):
+            raise db.LinkAheadException()
+    with raises(db.LinkAheadException):
         get_file_via_download(Inconsistent())