Merge branch 'f-linkahead-rename-2024-11' into 'dev'

New LinkAhead rename

See merge request !121

.docker/cert.sh

 #!/bin/bash
 
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2019 Daniel Hornung, Göttingen
 #

.gitlab-ci.yml

 #
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2018 Research Group Biomedical Physics,
 # Max-Planck-Institute for Dynamics and Self-Organization Göttingen

CHANGELOG.md

@@ -12,6 +12,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Changed ###
 
+- Using the official name "LinkAhead" wherever possible without large effort. This includes the
+  following exposed names / features:
+  - `models.data_model.LINKAHEAD_INTERNAL_PROPERTIES`
+  - `export_related.export` exports to `linkahead_data.xml` now.
+
 ### Deprecated ###
 
 ### Removed ###

Makefile

 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Daniel Hornung <d.hornung@indiscale.com>

RELEASE_GUIDELINES.md

 # Release Guidelines for the CaosDB Python Client Library
 
 This document specifies release guidelines in addition to the general release
-guidelines of the CaosDB Project
+guidelines of the LinkAhead project
 ([RELEASE_GUIDELINES.md](https://gitlab.com/caosdb/caosdb/blob/dev/RELEASE_GUIDELINES.md))
 
 ## General Prerequisites

extra/emacs/snippets/yaml-mode/RecordType

 # -*- mode: snippet -*-
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2022 IndiScale GmbH <info@indiscale.com>
 # Copyright (C) 2022 Daniel Hornung <d.hornung@indiscale.com>

integrationtests/clear_database.py

 # -*- coding: utf-8 -*-
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Florian Spreckelsen <f.spreckelsen@indiscale.com>
@@ -23,7 +23,7 @@
 # ** end header
 #
 """Clear the database before and after the integration tests."""
-import caosdb as db
+import linkahead as db
 
 
 def clear_all():

integrationtests/crawl.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2018 Research Group Biomedical Physics,
 # Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -28,7 +28,7 @@ import logging
 import sys
 from argparse import RawTextHelpFormatter
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.cfood import fileguide
 from caosadvancedtools.crawler import FileCrawler
 from caosadvancedtools.guard import INSERT, UPDATE

integrationtests/create_analysis.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2021 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2021 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -31,7 +31,7 @@ automated analysis pipeline.
 import sys
 from datetime import datetime
 
-import caosdb as db
+import linkahead as db
 
 
 def main():

integrationtests/example_hdf5cfood.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2021 IndiScale GmbH <www.indiscale.com>
 # Copyright (C) 2021 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -27,7 +27,7 @@
 An exemplary definition of a HDF5 CFood for integration testing
 """
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.cfoods.h5 import H5CFood
 from caosadvancedtools.scifolder import ExperimentCFood
 from caosadvancedtools.scifolder.generic_pattern import readme_pattern

integrationtests/insert_model.py

 #!/usr/bin/env python3
-import caosdb as db
+import linkahead as db
 import h5py
 from caosadvancedtools.cfoods.h5 import H5CFood
 from caosadvancedtools.models.data_model import DataModel

integrationtests/insert_some.py

 #!/usr/bin/env python3
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.scifolder.experiment_cfood import dm
 
 # This inserts two identifiables. When no dependencies are possible among

integrationtests/test_assure_functions.py

 #!/usr/bin/env python
 # encoding: utf-8
 #
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2022 IndiScale GmbH <info@indiscale.com>
 # Copyright (C) 2021 University Medical Center Göttingen, Institute for Medical Informatics
@@ -25,7 +25,7 @@
 no `to_be_updated` is specified.
 
 """
-import caosdb as db
+import linkahead as db
 
 from caosadvancedtools.cfood import (assure_object_is_in_list)
 from caosadvancedtools.guard import (global_guard, RETRIEVE, UPDATE)

integrationtests/test_base_table_exporter_integration.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Florian Sprecklelsen <f.spreckelsen@indiscale.com>
@@ -22,7 +22,7 @@
 #
 # ** end header
 #
-import caosdb as db
+import linkahead as db
 import pytest
 from caosadvancedtools import table_export as te
 

integrationtests/test_cache.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Florian Spreckelsen <f.spreckelsen@indiscale.com>
@@ -26,7 +26,7 @@ import os
 import unittest
 from tempfile import NamedTemporaryFile
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.cache import UpdateCache
 
 

integrationtests/test_crawl_with_datamodel_problems.py

 # -*- coding: utf-8 -*-
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (c) 2020 IndiScale GmbH <info@indiscale.com>
 # Copyright (c) 2020 Florian Spreckelsen <f.spreckelsen@indiscale.com>
@@ -25,7 +25,7 @@
 
 """
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools import loadFiles
 from caosadvancedtools.cfood import fileguide
 from caosadvancedtools.crawler import FileCrawler

integrationtests/test_crawler_basics.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2018 Research Group Biomedical Physics,
 # Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -29,7 +29,7 @@ cfoods. This is tested in test_crawler_with_cfoods.py.
 """
 import unittest
 
-import caosdb as db
+import linkahead as db
 
 from caosadvancedtools.crawler import Crawler
 from caosadvancedtools.guard import INSERT

integrationtests/test_crawler_with_cfoods.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2018 Research Group Biomedical Physics,
 # Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -25,8 +25,8 @@
 import os
 import unittest
 
-import caosdb as db
-from caosdb.apiutils import retrieve_entity_with_id
+import linkahead as db
+from linkahead.apiutils import retrieve_entity_with_id
 
 
 def get_entity_with_id(eid):

integrationtests/test_data_model.py

 import unittest
 import pytest
 
-import caosdb as db
+import linkahead as db
 from caosadvancedtools.models.data_model import DataModel
 
 

integrationtests/test_datamodel_problems.py

@@ -2,7 +2,7 @@
 # encoding: utf-8
 #
 # ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead project.
 #
 # Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
 # Copyright (C) 2020 Florian Spreckelsen <f.spreckelsen@indiscale.com>
@@ -27,10 +27,10 @@ during crawling that tests the integrations of the DataModelProblems
 class in crawler.py and cfood.py can be found in full-tests.
 
 """
-import caosdb as db
+import linkahead as db
 import pytest
 from caosadvancedtools.datamodel_problems import DataModelProblems
-from caosdb.exceptions import (TransactionError,
+from linkahead.exceptions import (TransactionError,
                                UnqualifiedParentsError,
                                UnqualifiedPropertiesError)