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caosdb
Software
caosdb-advanced-user-tools
Commits
b9818e07
Commit
b9818e07
authored
5 years ago
by
Henrik tom Wörden
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MAINT: removed parts that modify readmes; not needed in this context
parent
bc3ccff1
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1 changed file
src/caosadvancedtools/read_md_header.py
+9
-56
9 additions, 56 deletions
src/caosadvancedtools/read_md_header.py
with
9 additions
and
56 deletions
src/caosadvancedtools/read_md_header.py
+
9
−
56
View file @
b9818e07
...
...
@@ -33,20 +33,6 @@ import yaml
from
.cfood
import
AbstractCFood
,
get_entity
TEMPLATEHEADER
=
"""
---
title: {title}
location:
author:
participants:
date: {date}
keywords:
tags:
category:
...
"""
def
_clean_header
(
header
):
# Fill empty fields with empty string
...
...
@@ -74,7 +60,7 @@ class NoValidHeader(Exception):
super
().
__init__
(
msg
,
*
args
,
**
kwargs
)
def
get_header
(
filename
,
add_header
=
True
):
def
get_header
(
filename
):
"""
Open an md file identified by filename and read out the yaml
header.
...
...
@@ -156,47 +142,7 @@ it is not at the beginning, it must be preceded by a blank line.
return
(
found_1
,
found_2
,
_clean_header
(
yaml_part
))
if
not
add_header
:
raise
NoValidHeader
(
filename
)
else
:
print
(
"
Adding header in: {fn}
"
.
format
(
fn
=
filename
))
_add_header
(
filename
)
return
get_header
(
filename
)
def
get_date_and_title_from_name
(
filename
):
dir_re
=
re
.
compile
(
'
(?P<title>.+)\.(?P<date>[0-9\-]+)
'
)
file_re
=
re
.
compile
(
'
(?P<title>.+)\.(?P<date>[0-9\-]+)\.md
'
)
if
os
.
path
.
basename
(
filename
).
lower
()
==
"
readme.md
"
:
for
part
in
os
.
path
.
abspath
(
filename
).
split
(
os
.
path
.
sep
):
m
=
dir_re
.
match
(
part
)
if
m
is
not
None
:
break
else
:
m
=
file_re
.
match
(
filename
)
if
m
is
not
None
:
return
m
.
group
(
"
date
"
),
m
.
group
(
"
title
"
)
else
:
return
""
,
""
def
_add_header
(
filename
):
"""
Add a header to an md file. Date and title are guessed from the filename.
"""
with
open
(
filename
)
as
f
:
textlines
=
f
.
readlines
()
date
,
title
=
get_date_and_title_from_name
(
filename
)
localheader
=
TEMPLATEHEADER
.
format
(
date
=
str
(
date
),
title
=
title
)
with
open
(
filename
,
"
w
"
)
as
f
:
f
.
write
(
localheader
)
f
.
writelines
(
textlines
)
raise
NoValidHeader
(
filename
)
def
parse_responsibles
(
header
):
"""
...
...
@@ -207,10 +153,12 @@ def parse_responsibles(header):
If it is a simple string, it is added as the only person.
"""
people
=
[]
if
type
(
header
[
"
responsible
"
])
==
list
:
resplist
=
header
[
"
responsible
"
]
else
:
resplist
=
[
header
[
"
responsible
"
]]
for
person
in
header
[
"
responsible
"
]:
firstname
=
person
.
split
(
"
"
)[
0
]
lastname
=
person
.
split
(
"
"
)[
1
]
...
...
@@ -225,9 +173,11 @@ def parse_responsibles(header):
def
reference_data_files
(
entity
,
header
,
prefix
=
""
):
referenced_files
=
[]
for
glob
in
get_data_glob
(
header
):
if
not
glob
.
startswith
(
"
/
"
):
glob
=
os
.
path
.
normpath
(
os
.
path
.
join
(
prefix
,
glob
))
for
dfile
in
find_file_for_fileglob
(
glob
):
if
dfile
is
not
None
:
referenced_files
.
append
(
dfile
)
...
...
@@ -242,11 +192,13 @@ def get_data_glob(header):
else
:
raise
Exception
(
"
no suitable header fields
"
)
globs
=
[]
for
el
in
header
[
name
]:
if
isinstance
(
el
,
dict
)
and
"
filename
"
in
el
:
globs
.
append
(
el
[
"
filename
"
])
else
:
globs
.
append
(
el
)
return
globs
...
...
@@ -254,6 +206,7 @@ def find_file_for_fileglob(glob):
# TODO this probalby needs to be extended for different kinds of glob
query_string
=
"
FIND file which is stored at {}
"
.
format
(
glob
)
print
(
query_string
)
return
db
.
execute_query
(
query_string
)
...
...
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