Skip to content
GitLab
Explore
Sign in
Register
Primary navigation
Search or go to…
Project
C
caosdb-advanced-user-tools
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Iterations
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package registry
Container registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
GitLab community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
caosdb
Software
caosdb-advanced-user-tools
Commits
2368c7af
Verified
Commit
2368c7af
authored
4 years ago
by
Timm Fitschen
Browse files
Options
Downloads
Plain Diff
Merge branch 'lfilter' into table-error
parents
23f1311a
f178c8b3
No related branches found
No related tags found
1 merge request
!22
Release 0.3
Changes
2
Show whitespace changes
Inline
Side-by-side
Showing
2 changed files
src/caosadvancedtools/table_importer.py
+22
-21
22 additions, 21 deletions
src/caosadvancedtools/table_importer.py
unittests/test_table_importer.py
+4
-4
4 additions, 4 deletions
unittests/test_table_importer.py
with
26 additions
and
25 deletions
src/caosadvancedtools/table_importer.py
+
22
−
21
View file @
2368c7af
...
@@ -68,14 +68,14 @@ def yes_no_converter(val):
...
@@ -68,14 +68,14 @@ def yes_no_converter(val):
"
Field should be
'
Yes
'
or
'
No
'
, but is
'
{}
'
.
"
.
format
(
val
))
"
Field should be
'
Yes
'
or
'
No
'
, but is
'
{}
'
.
"
.
format
(
val
))
class
TSV
_
Importer
(
object
):
class
TSVImporter
(
object
):
def
__init__
(
self
,
converters
,
obligatory_columns
=
[],
unique_columns
=
[]):
def
__init__
(
self
,
converters
,
obligatory_columns
=
[],
unique_columns
=
[]):
raise
NotImplementedError
()
raise
NotImplementedError
()
class
XLS
_
Importer
(
object
):
class
XLSImporter
(
object
):
def
__init__
(
self
,
converters
,
obligatory_columns
=
None
,
unique_
column
s
=
None
):
def
__init__
(
self
,
converters
,
obligatory_columns
=
None
,
unique_
key
s
=
None
):
"""
"""
converters: dict with column names as keys and converter functions as
converters: dict with column names as keys and converter functions as
values
values
...
@@ -90,7 +90,7 @@ class XLS_Importer(object):
...
@@ -90,7 +90,7 @@ class XLS_Importer(object):
self
.
sup
=
SuppressKnown
()
self
.
sup
=
SuppressKnown
()
self
.
required_columns
=
list
(
converters
.
keys
())
self
.
required_columns
=
list
(
converters
.
keys
())
self
.
obligatory_columns
=
[]
if
obligatory_columns
is
None
else
obligatory_columns
self
.
obligatory_columns
=
[]
if
obligatory_columns
is
None
else
obligatory_columns
self
.
unique_
column
s
=
[]
if
unique_
column
s
is
None
else
unique_
column
s
self
.
unique_
key
s
=
[]
if
unique_
key
s
is
None
else
unique_
key
s
self
.
converters
=
converters
self
.
converters
=
converters
def
read_xls
(
self
,
filename
):
def
read_xls
(
self
,
filename
):
...
@@ -129,7 +129,7 @@ class XLS_Importer(object):
...
@@ -129,7 +129,7 @@ class XLS_Importer(object):
self
.
check_columns
(
df
,
filename
=
filename
)
self
.
check_columns
(
df
,
filename
=
filename
)
df
=
self
.
check_missing
(
df
,
filename
=
filename
)
df
=
self
.
check_missing
(
df
,
filename
=
filename
)
if
len
(
self
.
unique_
column
s
)
>
0
:
if
len
(
self
.
unique_
key
s
)
>
0
:
df
=
self
.
check_unique
(
df
,
filename
=
filename
)
df
=
self
.
check_unique
(
df
,
filename
=
filename
)
return
df
return
df
...
@@ -165,7 +165,8 @@ class XLS_Importer(object):
...
@@ -165,7 +165,8 @@ class XLS_Importer(object):
df
=
df
.
copy
()
df
=
df
.
copy
()
uniques
=
[]
uniques
=
[]
subtable
=
df
[
list
(
self
.
unique_columns
)]
for
unique_columns
in
self
.
unique_keys
:
subtable
=
df
[
list
(
unique_columns
)]
for
index
,
row
in
subtable
.
iterrows
():
for
index
,
row
in
subtable
.
iterrows
():
element
=
tuple
(
row
)
element
=
tuple
(
row
)
if
element
in
uniques
:
if
element
in
uniques
:
...
...
This diff is collapsed.
Click to expand it.
unittests/test_table_importer.py
+
4
−
4
View file @
2368c7af
...
@@ -23,7 +23,7 @@ from tempfile import NamedTemporaryFile
...
@@ -23,7 +23,7 @@ from tempfile import NamedTemporaryFile
import
numpy
as
np
import
numpy
as
np
import
pandas
as
pd
import
pandas
as
pd
from
caosadvancedtools.datainconsistency
import
DataInconsistencyError
from
caosadvancedtools.datainconsistency
import
DataInconsistencyError
from
caosadvancedtools.table_importer
import
(
XLS
_
Importer
,
name_converter
,
from
caosadvancedtools.table_importer
import
(
XLSImporter
,
name_converter
,
yes_no_converter
)
yes_no_converter
)
...
@@ -45,11 +45,11 @@ class ConverterTest(unittest.TestCase):
...
@@ -45,11 +45,11 @@ class ConverterTest(unittest.TestCase):
self
.
assertRaises
(
ValueError
,
name_converter
,
"
Max Mustermann
"
)
self
.
assertRaises
(
ValueError
,
name_converter
,
"
Max Mustermann
"
)
class
XLS
_
ImporterTest
(
unittest
.
TestCase
):
class
XLSImporterTest
(
unittest
.
TestCase
):
def
setUp
(
self
):
def
setUp
(
self
):
self
.
importer
=
XLS
_
Importer
(
self
.
importer
=
XLSImporter
(
converters
=
{
'
a
'
:
str
,
'
b
'
:
int
,
'
c
'
:
float
,
'
d
'
:
yes_no_converter
},
converters
=
{
'
a
'
:
str
,
'
b
'
:
int
,
'
c
'
:
float
,
'
d
'
:
yes_no_converter
},
obligatory_columns
=
[
'
a
'
,
'
b
'
],
unique_
column
s
=
[
'
a
'
,
'
b
'
])
obligatory_columns
=
[
'
a
'
,
'
b
'
],
unique_
key
s
=
[
(
'
a
'
,
'
b
'
)
])
self
.
valid_df
=
pd
.
DataFrame
(
self
.
valid_df
=
pd
.
DataFrame
(
[[
'
a
'
,
1
,
2.0
,
'
yes
'
]],
columns
=
[
'
a
'
,
'
b
'
,
'
c
'
,
'
d
'
])
[[
'
a
'
,
1
,
2.0
,
'
yes
'
]],
columns
=
[
'
a
'
,
'
b
'
,
'
c
'
,
'
d
'
])
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment