Skip to content
Snippets Groups Projects
Select Git revision
  • aea0753beec62733ad69b9345b6d9919bc13c48b
  • main default protected
  • f-yaml-parser-enums
  • dev protected
  • f-fix-paths
  • f-fix-validate-to-dict
  • f-labfolder-converter
  • f-state-machine-script
  • f-xlsx-converter-warnings-errors
  • f-rename
  • f-extra-deps
  • f-more-jsonschema-export
  • f-henrik
  • f-fix-89
  • f-trigger-advanced-user-tools
  • f-real-rename-test
  • f-linkahead-rename
  • f-register-integrationtests
  • f-fix-id
  • f-h5-files
  • f-json-schema
  • v0.14.0
  • v0.13.0
  • v0.12.0
  • v0.11.0
  • v0.10.0-numpy2
  • v0.10.0
  • v0.9.0
  • v0.8.0
  • v0.7.0
  • v0.6.1
  • v0.6.0
  • v0.5.0
  • v0.4.1
  • v0.4.0
  • v0.3.1
  • v0.3.0
37 results

test_json_schema_datamodel_parser.py

Blame
  • Code owners
    Assign users and groups as approvers for specific file changes. Learn more.
    test_json_schema_datamodel_parser.py 7.37 KiB
    #
    # This file is a part of the LinkAhead Project.
    #
    # Copyright (C) 2022 IndiScale GmbH <info@indiscale.com>
    # Copyright (C) 2022 Florian Spreckelsen <f.spreckelsen@indiscale.com>
    #
    # This program is free software: you can redistribute it and/or modify it under
    # the terms of the GNU Affero General Public License as published by the Free
    # Software Foundation, either version 3 of the License, or (at your option) any
    # later version.
    #
    # This program is distributed in the hope that it will be useful, but WITHOUT
    # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
    # FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more
    # details.
    #
    # You should have received a copy of the GNU Affero General Public License along
    # with this program. If not, see <https://www.gnu.org/licenses/>.
    #
    
    import os
    
    import caosdb as db
    from caosadvancedtools.models.parser import parse_model_from_json_schema
    
    
    def _clear_db():
        ents = db.execute_query("FIND ENTITY WITH ID>99")
        if ents:
            ents.delete()
    
    
    def setup_module():
        _clear_db()
    
    
    def teardown_module():
        _clear_db()
    
    
    def _load_and_sync(fname):
        """Load datamodel from json schema in fname and synchronize it without asking.
    
        """
        # @author Florian Spreckelsen
        # @date 2022-03-23
        fpath = os.path.join(os.path.dirname(os.path.abspath(__file__)), fname)
        model = parse_model_from_json_schema(fpath)
        model.sync_data_model(noquestion=True)
    
    
    def test_json_parsed_datamodel():
        # @author Florian Spreckelsen
        # @date 2022-03-23
    
        _load_and_sync("test_datamodel.schema.json")
    
        # RecordType with atomic properties
        rt1 = db.execute_query(
            "FIND RECORDTYPE TestTypeWithAtomicProps", unique=True)
        assert rt1.description == "RecordType with scalar atomic properties"
        assert rt1.get_property("simple_text_prop") is not None
        assert rt1.get_property("simple_text_prop").datatype == db.TEXT
        assert rt1.get_importance("simple_text_prop") == db.OBLIGATORY
    
        assert rt1.get_property("IntegerProperty") is not None
        assert rt1.get_property("IntegerProperty").datatype == db.INTEGER
        assert rt1.get_importance("IntegerProperty") == db.RECOMMENDED
    
        assert rt1.get_property("double_prop") is not None
        assert rt1.get_property("double_prop").datatype == db.DOUBLE
        assert rt1.get_importance("double_prop") == db.OBLIGATORY
        assert (db.Property(name="double_prop").retrieve().description ==
                "Some generic double-valued property")
    
        further_props = [
            ("bool_prop", db.BOOLEAN),
            ("datetime_prop", db.DATETIME),
            ("date_prop", db.DATETIME)
        ]
        for name, dtype in further_props:
            assert rt1.get_property(name) is not None
            assert rt1.get_property(name).datatype == dtype
            assert rt1.get_importance(name) == db.RECOMMENDED
    
        # RecordType with references and enums
        rt2 = db.execute_query(
            "FIND RECORDTYPE TestTypeWithReferencesAndEnum", unique=True)
        assert rt2.get_property(rt1.name) is not None
        assert rt2.get_property(rt1.name).is_reference()
        assert rt2.get_property(rt1.name).name == rt1.name
        assert rt2.get_property(rt1.name).id == rt1.id
    
        other_ref_type = db.execute_query(
            "FIND RECORDTYPE OtherReference", unique=True)
        assert rt2.get_property(other_ref_type.name) is not None
        assert rt2.get_property(other_ref_type.name).is_reference()
        assert rt2.get_property(other_ref_type.name).name == other_ref_type.name
        assert rt2.get_property(other_ref_type.name).id == other_ref_type.id
        assert other_ref_type.description == "Some generic refernced RecordType"
        assert len(other_ref_type.properties) == 0
    
        named_ref_type = db.execute_query(
            "FIND RECORDTYPE NamedReference", unique=True)
        assert rt2.get_property(named_ref_type.name) is not None
        assert rt2.get_property(named_ref_type.name).is_reference()
        assert rt2.get_property(named_ref_type.name).name == named_ref_type.name
        assert rt2.get_property(named_ref_type.name).id == named_ref_type.id
        assert named_ref_type.get_property("simple_text_prop") is not None
        assert (named_ref_type.get_property("simple_text_prop").id ==
                rt1.get_property("simple_text_prop").id)
        assert (named_ref_type.get_property("simple_text_prop").datatype ==
                rt1.get_property("simple_text_prop").datatype)
    
        enums = {
            "string_enum": ["StringEnumA", "StringEnumB", "StringEnumC"],
            "NamedEnum": ["NameA", "NameB", "NameC"]
        }
        for enum_type_name, enum_names in enums.items():
            enum_type = db.execute_query(
                f"FIND RECORDTYPE {enum_type_name}", unique=True)
            assert len(enum_type.properties) == 0
            enum_records = db.execute_query(f"FIND RECORD {enum_type_name}")
            assert len(enum_records) == len(enum_names)
            for rec in enum_records:
                assert rec.name in enum_names
            assert rt2.get_property(enum_type_name) is not None
            assert rt2.get_property(enum_type_name).is_reference()
            assert rt2.get_property(enum_type_name).name == enum_type.name
            assert rt2.get_property(enum_type_name).id == enum_type.id
    
        # Recordtype with lists
        rt3 = db.execute_query("FIND RECORDTYPE TestTypeWithLists", unique=True)
        assert rt3.get_property("string_list") is not None
        assert rt3.get_property("string_list").datatype == db.LIST(db.TEXT)
        string_list_prop = db.Property(name="string_list").retrieve()
        assert string_list_prop.description == "A list of words"
        assert string_list_prop.datatype == db.LIST(db.TEXT)
        assert string_list_prop.id == rt3.get_property("string_list").id
    
        assert rt3.get_property("NamedIntList") is not None
        assert rt3.get_property("NamedIntList").datatype == db.LIST(db.INTEGER)
    
        # This is a list of a plain references to a specific type
        list_rt = db.execute_query("FIND RECORDTYPE ListRecordType", unique=True)
        assert len(list_rt.properties) == 0
        assert rt3.get_property(list_rt.name) is not None
        assert rt3.get_property(list_rt.name).is_reference()
        assert rt3.get_property(list_rt.name).datatype == db.LIST(list_rt)
        assert rt3.get_property(list_rt.name).id == list_rt.id
    
        # This is a list property of its own, referencing another separate RT
        referenced_list_rt = db.execute_query(
            "FIND RECORDTYPE ReferencedListTypeWithName", unique=True)
        assert referenced_list_rt.description == "Referenced by a named list-of-references property"
        assert referenced_list_rt.get_property("double_prop") is not None
        assert (referenced_list_rt.get_property("double_prop").id ==
                rt1.get_property("double_prop").id)
        assert rt3.get_property("NamedReferenceList") is not None
        assert rt3.get_property("NamedReferenceList").is_reference()
        assert rt3.get_property(
            "NamedReferenceList").datatype == db.LIST(referenced_list_rt)
        assert rt3.get_property("NamedReferenceList").id != referenced_list_rt.id
    
        enum_type = db.execute_query("FIND RECORDTYPE ListNumberEnum", unique=True)
        assert len(enum_type.properties) == 0
        enum_names = ["1.1", "2.2", "3.3"]
        enum_records = db.execute_query("FIND RECORD ListNumberEnum")
        assert len(enum_records) == len(enum_names)
        for rec in enum_records:
            assert rec.name in enum_names
        assert rt3.get_property(enum_type.name) is not None
        assert rt3.get_property(enum_type.name).datatype == db.LIST(enum_type)
        assert rt3.get_property(enum_type.name).id == enum_type.id