From fe4d2ca453d659841940054f721bf6f4e0a43322 Mon Sep 17 00:00:00 2001 From: Florian Spreckelsen <f.spreckelsen@indiscale.com> Date: Wed, 29 Jan 2025 18:20:16 +0100 Subject: [PATCH] DOC: Add a brief description of customizations to the README --- README.md | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/README.md b/README.md index a91b7e5..ff11a58 100644 --- a/README.md +++ b/README.md @@ -29,6 +29,31 @@ instance's data model (e.g., by [synchronizing with the LinkAhead advanced user tools](https://docs.indiscale.com//caosdb-advanced-user-tools/yaml_interface.html)). +## Customization + +The sample management module can be customized by overwriting +indivdual code and config files by using files of the same name and +with the same relative path in your LinkAhead profile's custom +directory. E.g., if you want to overwrite how sample entities are post-processed in the sample upload, you overwrite + +``` +sample-management-custom/caosdb-server/scripting/bin/sample_helpers/sample_upload_post_processing.py +``` + +from this repository by a + +``` +profile/custom/caosdb-server/scripting/bin/sample_helpers/sample_upload_post_processing.py +``` + +in your server profile. When doing so, it is important that in your +custom file, you use the exact same function names, signatures, and +return types as in the original file. In our example, the custom +`sample_upload_post_processing.py` needs to contain a +`post_process_samples` that takes the samples and the csv data as +arguments and returns the list of post processed samples. + + ## Testing There is a pre-configured `test-profile` that you can use for testing -- GitLab