diff --git a/makefile b/makefile index e900742bededb1651c9e64963efe6db01014903e..b348e696c719de03ed171a58eda1f1aaa15e83a9 100644 --- a/makefile +++ b/makefile @@ -23,10 +23,14 @@ # ** end header # +CAOSDB_SERVER_VERSION ?= $(mvn org.apache.maven.plugins:maven-help-plugin:3.1.0:evaluate -Dexpression=project.version -q -DforceStdout) SHELL:=/bin/bash JPDA_PORT ?= 9000 JMX_PORT ?= 9090 +echoversion: + echo $(CAOSDB_SERVER_VERSION) + compile: easy-units mvn compile diff --git a/pom.xml b/pom.xml index 65174bd706023526d6aba948cf890dd2e73dc3bf..ad25a348516752db81e2e7204c15db08e53d0cbc 100644 --- a/pom.xml +++ b/pom.xml @@ -23,9 +23,9 @@ --> <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> <modelVersion>4.0.0</modelVersion> - <groupId>bmp.ds.mpg.de</groupId> + <groupId>org.caosdb</groupId> <artifactId>caosdb-server</artifactId> - <version>0.1-SNAPSHOT</version> + <version>0.2</version> <packaging>jar</packaging> <name>CaosDB Server</name> <properties> diff --git a/src/main/java/caosdb/server/database/BackendTransaction.java b/src/main/java/caosdb/server/database/BackendTransaction.java deleted file mode 100644 index 55987005d2c8c76f432cb12065f45b598075ec9c..0000000000000000000000000000000000000000 --- a/src/main/java/caosdb/server/database/BackendTransaction.java +++ /dev/null @@ -1,298 +0,0 @@ -/* - * ** header v3.0 - * This file is a part of the CaosDB Project. - * - * Copyright (C) 2018 Research Group Biomedical Physics, - * Max-Planck-Institute for Dynamics and Self-Organization Göttingen - * Copyright (C) 2020 IndiScale GmbH - * Copyright (C) 2020 Timm Fitschen (t.fitschen@indiscale.com) - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see <https://www.gnu.org/licenses/>. - * - * ** end header - */ -package caosdb.server.database; - -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.implementation.MySQL.MySQLDeleteEntityProperties; -import caosdb.server.database.backend.implementation.MySQL.MySQLDeletePassword; -import caosdb.server.database.backend.implementation.MySQL.MySQLDeleteRole; -import caosdb.server.database.backend.implementation.MySQL.MySQLDeleteSparseEntity; -import caosdb.server.database.backend.implementation.MySQL.MySQLDeleteUser; -import caosdb.server.database.backend.implementation.MySQL.MySQLGetAllNames; -import caosdb.server.database.backend.implementation.MySQL.MySQLGetChildren; -import caosdb.server.database.backend.implementation.MySQL.MySQLGetDependentEntities; -import caosdb.server.database.backend.implementation.MySQL.MySQLGetFileRecordByPath; -import caosdb.server.database.backend.implementation.MySQL.MySQLGetIDByName; -import caosdb.server.database.backend.implementation.MySQL.MySQLGetInfo; -import caosdb.server.database.backend.implementation.MySQL.MySQLGetUpdateableChecksums; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertEntityDatatype; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertEntityProperties; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertLinCon; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertLogRecord; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertParents; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertRole; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertSparseEntity; -import caosdb.server.database.backend.implementation.MySQL.MySQLInsertTransactionHistory; -import caosdb.server.database.backend.implementation.MySQL.MySQLIsSubType; -import caosdb.server.database.backend.implementation.MySQL.MySQLRegisterSubDomain; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveAll; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveAllUncheckedFiles; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveDatatypes; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveLogRecord; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveParents; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrievePasswordValidator; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrievePermissionRules; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveProperties; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveQueryTemplateDefinition; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveRole; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveSparseEntity; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveTransactionHistory; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveUser; -import caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveVersionHistory; -import caosdb.server.database.backend.implementation.MySQL.MySQLRuleLoader; -import caosdb.server.database.backend.implementation.MySQL.MySQLSetFileCheckedTimestampImpl; -import caosdb.server.database.backend.implementation.MySQL.MySQLSetPassword; -import caosdb.server.database.backend.implementation.MySQL.MySQLSetPermissionRules; -import caosdb.server.database.backend.implementation.MySQL.MySQLSetQueryTemplateDefinition; -import caosdb.server.database.backend.implementation.MySQL.MySQLSyncStats; -import caosdb.server.database.backend.implementation.MySQL.MySQLUpdateSparseEntity; -import caosdb.server.database.backend.implementation.MySQL.MySQLUpdateUser; -import caosdb.server.database.backend.implementation.MySQL.MySQLUpdateUserRoles; -import caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemCheckHash; -import caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemCheckSize; -import caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemFileExists; -import caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemFileWasModifiedAfter; -import caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemGetFileIterator; -import caosdb.server.database.backend.interfaces.BackendTransactionImpl; -import caosdb.server.database.backend.interfaces.DeleteEntityPropertiesImpl; -import caosdb.server.database.backend.interfaces.DeletePasswordImpl; -import caosdb.server.database.backend.interfaces.DeleteRoleImpl; -import caosdb.server.database.backend.interfaces.DeleteSparseEntityImpl; -import caosdb.server.database.backend.interfaces.DeleteUserImpl; -import caosdb.server.database.backend.interfaces.FileCheckHash; -import caosdb.server.database.backend.interfaces.FileCheckSize; -import caosdb.server.database.backend.interfaces.FileExists; -import caosdb.server.database.backend.interfaces.FileWasModifiedAfter; -import caosdb.server.database.backend.interfaces.GetAllNamesImpl; -import caosdb.server.database.backend.interfaces.GetChildrenImpl; -import caosdb.server.database.backend.interfaces.GetDependentEntitiesImpl; -import caosdb.server.database.backend.interfaces.GetFileIteratorImpl; -import caosdb.server.database.backend.interfaces.GetFileRecordByPathImpl; -import caosdb.server.database.backend.interfaces.GetIDByNameImpl; -import caosdb.server.database.backend.interfaces.GetInfoImpl; -import caosdb.server.database.backend.interfaces.GetUpdateableChecksumsImpl; -import caosdb.server.database.backend.interfaces.InsertEntityDatatypeImpl; -import caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; -import caosdb.server.database.backend.interfaces.InsertLinConImpl; -import caosdb.server.database.backend.interfaces.InsertLogRecordImpl; -import caosdb.server.database.backend.interfaces.InsertParentsImpl; -import caosdb.server.database.backend.interfaces.InsertRoleImpl; -import caosdb.server.database.backend.interfaces.InsertSparseEntityImpl; -import caosdb.server.database.backend.interfaces.InsertTransactionHistoryImpl; -import caosdb.server.database.backend.interfaces.IsSubTypeImpl; -import caosdb.server.database.backend.interfaces.RegisterSubDomainImpl; -import caosdb.server.database.backend.interfaces.RetrieveAllImpl; -import caosdb.server.database.backend.interfaces.RetrieveAllUncheckedFilesImpl; -import caosdb.server.database.backend.interfaces.RetrieveDatatypesImpl; -import caosdb.server.database.backend.interfaces.RetrieveLogRecordImpl; -import caosdb.server.database.backend.interfaces.RetrieveParentsImpl; -import caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; -import caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; -import caosdb.server.database.backend.interfaces.RetrievePropertiesImpl; -import caosdb.server.database.backend.interfaces.RetrieveQueryTemplateDefinitionImpl; -import caosdb.server.database.backend.interfaces.RetrieveRoleImpl; -import caosdb.server.database.backend.interfaces.RetrieveSparseEntityImpl; -import caosdb.server.database.backend.interfaces.RetrieveTransactionHistoryImpl; -import caosdb.server.database.backend.interfaces.RetrieveUserImpl; -import caosdb.server.database.backend.interfaces.RetrieveVersionHistoryImpl; -import caosdb.server.database.backend.interfaces.RuleLoaderImpl; -import caosdb.server.database.backend.interfaces.SetFileCheckedTimestampImpl; -import caosdb.server.database.backend.interfaces.SetPasswordImpl; -import caosdb.server.database.backend.interfaces.SetPermissionRulesImpl; -import caosdb.server.database.backend.interfaces.SetQueryTemplateDefinitionImpl; -import caosdb.server.database.backend.interfaces.SyncStatsImpl; -import caosdb.server.database.backend.interfaces.UpdateSparseEntityImpl; -import caosdb.server.database.backend.interfaces.UpdateUserImpl; -import caosdb.server.database.backend.interfaces.UpdateUserRolesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.utils.UndoHandler; -import caosdb.server.utils.Undoable; -import java.util.HashMap; - -public abstract class BackendTransaction implements Undoable { - - private final UndoHandler undoHandler = new UndoHandler(); - private Access access; - private TransactionBenchmark benchmark; - private static HashMap< - Class<? extends BackendTransactionImpl>, Class<? extends BackendTransactionImpl>> - impl = new HashMap<>(); - - protected abstract void execute(); - - public final void executeTransaction() { - final long t1 = System.currentTimeMillis(); - execute(); - final long t2 = System.currentTimeMillis(); - this.addMeasurement(this, t2 - t1); - } - - /** - * Intialiaze the adapters to the database backend. - * - * <p>Currently this is hard-coded to the MySQL-Backend but the architecture of this class is - * designed to make it easy in the future to choose other implementations (i.e. other back-ends) - */ - public static void init() { - if (impl.isEmpty()) { - setImpl(GetAllNamesImpl.class, MySQLGetAllNames.class); - setImpl(DeleteEntityPropertiesImpl.class, MySQLDeleteEntityProperties.class); - setImpl(DeleteSparseEntityImpl.class, MySQLDeleteSparseEntity.class); - setImpl(GetChildrenImpl.class, MySQLGetChildren.class); - setImpl(GetDependentEntitiesImpl.class, MySQLGetDependentEntities.class); - setImpl(GetIDByNameImpl.class, MySQLGetIDByName.class); - setImpl(GetInfoImpl.class, MySQLGetInfo.class); - setImpl(InsertEntityPropertiesImpl.class, MySQLInsertEntityProperties.class); - setImpl(InsertLinConImpl.class, MySQLInsertLinCon.class); - setImpl(InsertParentsImpl.class, MySQLInsertParents.class); - setImpl(InsertSparseEntityImpl.class, MySQLInsertSparseEntity.class); - setImpl(InsertTransactionHistoryImpl.class, MySQLInsertTransactionHistory.class); - setImpl(IsSubTypeImpl.class, MySQLIsSubType.class); - setImpl(UpdateSparseEntityImpl.class, MySQLUpdateSparseEntity.class); - setImpl(RetrieveAllImpl.class, MySQLRetrieveAll.class); - setImpl(RegisterSubDomainImpl.class, MySQLRegisterSubDomain.class); - setImpl(RetrieveDatatypesImpl.class, MySQLRetrieveDatatypes.class); - setImpl(RetrieveTransactionHistoryImpl.class, MySQLRetrieveTransactionHistory.class); - setImpl(RetrieveUserImpl.class, MySQLRetrieveUser.class); - setImpl(RetrieveParentsImpl.class, MySQLRetrieveParents.class); - setImpl(GetFileRecordByPathImpl.class, MySQLGetFileRecordByPath.class); - setImpl(RetrievePropertiesImpl.class, MySQLRetrieveProperties.class); - setImpl(RetrieveSparseEntityImpl.class, MySQLRetrieveSparseEntity.class); - setImpl(RuleLoaderImpl.class, MySQLRuleLoader.class); - setImpl(SyncStatsImpl.class, MySQLSyncStats.class); - setImpl(FileExists.class, UnixFileSystemFileExists.class); - setImpl(FileWasModifiedAfter.class, UnixFileSystemFileWasModifiedAfter.class); - setImpl(FileCheckHash.class, UnixFileSystemCheckHash.class); - setImpl(GetFileIteratorImpl.class, UnixFileSystemGetFileIterator.class); - setImpl(SetFileCheckedTimestampImpl.class, MySQLSetFileCheckedTimestampImpl.class); - setImpl(RetrieveAllUncheckedFilesImpl.class, MySQLRetrieveAllUncheckedFiles.class); - setImpl(UpdateUserImpl.class, MySQLUpdateUser.class); - setImpl(DeleteUserImpl.class, MySQLDeleteUser.class); - setImpl(SetPasswordImpl.class, MySQLSetPassword.class); - setImpl(RetrievePasswordValidatorImpl.class, MySQLRetrievePasswordValidator.class); - setImpl(DeletePasswordImpl.class, MySQLDeletePassword.class); - setImpl(GetUpdateableChecksumsImpl.class, MySQLGetUpdateableChecksums.class); - setImpl(FileCheckSize.class, UnixFileSystemCheckSize.class); - setImpl(InsertRoleImpl.class, MySQLInsertRole.class); - setImpl(RetrieveRoleImpl.class, MySQLRetrieveRole.class); - setImpl(DeleteRoleImpl.class, MySQLDeleteRole.class); - setImpl(SetPermissionRulesImpl.class, MySQLSetPermissionRules.class); - setImpl(RetrievePermissionRulesImpl.class, MySQLRetrievePermissionRules.class); - setImpl(UpdateUserRolesImpl.class, MySQLUpdateUserRoles.class); - setImpl(InsertLogRecordImpl.class, MySQLInsertLogRecord.class); - setImpl(RetrieveLogRecordImpl.class, MySQLRetrieveLogRecord.class); - setImpl(SetQueryTemplateDefinitionImpl.class, MySQLSetQueryTemplateDefinition.class); - setImpl( - RetrieveQueryTemplateDefinitionImpl.class, MySQLRetrieveQueryTemplateDefinition.class); - setImpl(InsertEntityDatatypeImpl.class, MySQLInsertEntityDatatype.class); - setImpl(RetrieveVersionHistoryImpl.class, MySQLRetrieveVersionHistory.class); - } - } - - /** - * Execute this BackendTransaction, using the implementation given as an argument. - * - * <p>The implementation's benchmark is set to the corresponding sub-benchmark of this object's - * benchmark. - * - * @param t This BackendTransaction's execute() method will be called. - * @return The BackendTransaction which was passed as an argument. - */ - protected <K extends BackendTransaction> K execute(final K t) { - assert t != this; - this.undoHandler.append(t); - t.setAccess(this.access); - if (benchmark != null) { - t.setTransactionBenchmark(benchmark.getBenchmark(t.getClass())); - } - final long t1 = System.currentTimeMillis(); - t.execute(); - final long t2 = System.currentTimeMillis(); - this.addMeasurement(t, t2 - t1); - return t; - } - - public static <K extends BackendTransactionImpl, L extends K> void setImpl( - final Class<K> k, final Class<L> l) { - impl.put(k, l); - } - - public void setAccess(final Access access) { - this.access = access; - } - - @SuppressWarnings("unchecked") - protected <T extends BackendTransactionImpl> T getImplementation(final Class<T> clz) { - init(); - try { - Class<?> implclz = impl.get(clz); - final T ret = (T) implclz.getConstructor(Access.class).newInstance(this.access); - if (ret instanceof Undoable) { - this.undoHandler.append((Undoable) ret); - } - if (benchmark != null) { - ret.setTransactionBenchmark(benchmark.getBenchmark(ret.getClass())); - } - return ret; - } catch (final Exception e) { - throw new TransactionException(e); - } - } - - protected UndoHandler getUndoHandler() { - return this.undoHandler; - } - - @Override - public final void undo() { - this.undoHandler.undo(); - } - - @Override - public final void cleanUp() { - this.undoHandler.cleanUp(); - } - - boolean useCache() { - return this.access.useCache(); - } - - @Override - public String toString() { - return this.getClass().getSimpleName(); - } - - /** Set the benchmark object for this AbstractTransaction. */ - public void setTransactionBenchmark(TransactionBenchmark b) { - this.benchmark = b; - } - - public void addMeasurement(Object o, long time) { - if (this.benchmark != null) { - this.benchmark.addMeasurement(o, time); - } - } -} diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertEntityDatatypeImpl.java b/src/main/java/caosdb/server/database/backend/interfaces/InsertEntityDatatypeImpl.java deleted file mode 100644 index 2f6f7c859281344997e1c781e9a56aafa5d03fc4..0000000000000000000000000000000000000000 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertEntityDatatypeImpl.java +++ /dev/null @@ -1,8 +0,0 @@ -package caosdb.server.database.backend.interfaces; - -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.utils.Undoable; - -public interface InsertEntityDatatypeImpl extends BackendTransactionImpl, Undoable { - public abstract void execute(SparseEntity entity); -} diff --git a/src/main/java/caosdb/datetime/Date.java b/src/main/java/org/caosdb/datetime/Date.java similarity index 96% rename from src/main/java/caosdb/datetime/Date.java rename to src/main/java/org/caosdb/datetime/Date.java index b0d025df6382ef52cf18105aa5601fb4cda3c869..2b7aa522272f48b468dd8c4945360dee14f52d6e 100644 --- a/src/main/java/caosdb/datetime/Date.java +++ b/src/main/java/org/caosdb/datetime/Date.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; -import caosdb.server.datatype.AbstractDatatype.Table; import java.util.Calendar; import java.util.GregorianCalendar; import java.util.TimeZone; +import org.caosdb.server.datatype.AbstractDatatype.Table; import org.jdom2.Element; public class Date extends SemiCompleteDateTime { diff --git a/src/main/java/caosdb/datetime/DateTimeFactory2.java b/src/main/java/org/caosdb/datetime/DateTimeFactory2.java similarity index 97% rename from src/main/java/caosdb/datetime/DateTimeFactory2.java rename to src/main/java/org/caosdb/datetime/DateTimeFactory2.java index 40aa7473c1f0e0424243387be0871f4a900668b8..103359c7b4ff6f995996866e2283bab47562699c 100644 --- a/src/main/java/caosdb/datetime/DateTimeFactory2.java +++ b/src/main/java/org/caosdb/datetime/DateTimeFactory2.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; -import caosdb.server.query.CQLParsingErrorListener; -import caosdb.server.query.CQLParsingErrorListener.ParsingError; import java.util.Arrays; import java.util.Calendar; import java.util.TimeZone; import org.antlr.v4.runtime.CharStreams; import org.antlr.v4.runtime.CommonTokenStream; +import org.caosdb.server.query.CQLParsingErrorListener; +import org.caosdb.server.query.CQLParsingErrorListener.ParsingError; public class DateTimeFactory2 implements DateTimeFactoryInterface { diff --git a/src/main/java/caosdb/datetime/DateTimeFactoryInterface.java b/src/main/java/org/caosdb/datetime/DateTimeFactoryInterface.java similarity index 98% rename from src/main/java/caosdb/datetime/DateTimeFactoryInterface.java rename to src/main/java/org/caosdb/datetime/DateTimeFactoryInterface.java index 89ce60d338668bcf95aec207cd82f16a46d6d49b..c81018f939747344b6991e291d3439f164dad283 100644 --- a/src/main/java/caosdb/datetime/DateTimeFactoryInterface.java +++ b/src/main/java/org/caosdb/datetime/DateTimeFactoryInterface.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; import java.util.Date; diff --git a/src/main/java/caosdb/datetime/DateTimeInterface.java b/src/main/java/org/caosdb/datetime/DateTimeInterface.java similarity index 93% rename from src/main/java/caosdb/datetime/DateTimeInterface.java rename to src/main/java/org/caosdb/datetime/DateTimeInterface.java index 33d508cc9ba698410914d74d1f8227d57bb1ded8..e6f1b93382da7deaf1ec1226d193fe1db4b3735d 100644 --- a/src/main/java/caosdb/datetime/DateTimeInterface.java +++ b/src/main/java/org/caosdb/datetime/DateTimeInterface.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; -import caosdb.server.datatype.SingleValue; import java.util.TimeZone; +import org.caosdb.server.datatype.SingleValue; public interface DateTimeInterface extends SingleValue { diff --git a/src/main/java/caosdb/datetime/DateTimeLexer.g4 b/src/main/java/org/caosdb/datetime/DateTimeLexer.g4 similarity index 100% rename from src/main/java/caosdb/datetime/DateTimeLexer.g4 rename to src/main/java/org/caosdb/datetime/DateTimeLexer.g4 diff --git a/src/main/java/caosdb/datetime/DateTimeParser.g4 b/src/main/java/org/caosdb/datetime/DateTimeParser.g4 similarity index 100% rename from src/main/java/caosdb/datetime/DateTimeParser.g4 rename to src/main/java/org/caosdb/datetime/DateTimeParser.g4 diff --git a/src/main/java/caosdb/datetime/DateTimeStringStrategy.java b/src/main/java/org/caosdb/datetime/DateTimeStringStrategy.java similarity index 97% rename from src/main/java/caosdb/datetime/DateTimeStringStrategy.java rename to src/main/java/org/caosdb/datetime/DateTimeStringStrategy.java index 299a1b78a913a6abea3c8abcdec265eb78996cc4..635b2cfa0569e62847e8f4f2af0684c5919e8f8d 100644 --- a/src/main/java/caosdb/datetime/DateTimeStringStrategy.java +++ b/src/main/java/org/caosdb/datetime/DateTimeStringStrategy.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; import java.util.TimeZone; diff --git a/src/main/java/caosdb/datetime/FragmentDateTime.java b/src/main/java/org/caosdb/datetime/FragmentDateTime.java similarity index 98% rename from src/main/java/caosdb/datetime/FragmentDateTime.java rename to src/main/java/org/caosdb/datetime/FragmentDateTime.java index 46bec5498284f842dbea83dcf41848d088d5d9bc..52faf5f2040de56c05bb7ce4b5aee130fadf67c3 100644 --- a/src/main/java/caosdb/datetime/FragmentDateTime.java +++ b/src/main/java/org/caosdb/datetime/FragmentDateTime.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; import java.util.TimeZone; diff --git a/src/main/java/caosdb/datetime/GregorianCalendarDateTimeStringStrategy.java b/src/main/java/org/caosdb/datetime/GregorianCalendarDateTimeStringStrategy.java similarity index 98% rename from src/main/java/caosdb/datetime/GregorianCalendarDateTimeStringStrategy.java rename to src/main/java/org/caosdb/datetime/GregorianCalendarDateTimeStringStrategy.java index 22e83dc7070e1adf726af251a106c7d8b1ba7cab..459f1d592beca6b62704e9592c6afe39c1104f57 100644 --- a/src/main/java/caosdb/datetime/GregorianCalendarDateTimeStringStrategy.java +++ b/src/main/java/org/caosdb/datetime/GregorianCalendarDateTimeStringStrategy.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; import java.text.SimpleDateFormat; import java.util.Calendar; diff --git a/src/main/java/caosdb/datetime/Interval.java b/src/main/java/org/caosdb/datetime/Interval.java similarity index 97% rename from src/main/java/caosdb/datetime/Interval.java rename to src/main/java/org/caosdb/datetime/Interval.java index 59a3915e53abf1b88f281359bd115d776125f47f..9890fb4c0643c498dc5e7d5108b9c9c4a13cc9b8 100644 --- a/src/main/java/caosdb/datetime/Interval.java +++ b/src/main/java/org/caosdb/datetime/Interval.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; public interface Interval extends DateTimeInterface { diff --git a/src/main/java/caosdb/datetime/LeapSecondDateTimeStringStrategy.java b/src/main/java/org/caosdb/datetime/LeapSecondDateTimeStringStrategy.java similarity index 98% rename from src/main/java/caosdb/datetime/LeapSecondDateTimeStringStrategy.java rename to src/main/java/org/caosdb/datetime/LeapSecondDateTimeStringStrategy.java index 28beb7603ac798f1399b108fe87f1b729975a537..5aff2dce7979e32f595c4ec8bae12378239cc3dc 100644 --- a/src/main/java/caosdb/datetime/LeapSecondDateTimeStringStrategy.java +++ b/src/main/java/org/caosdb/datetime/LeapSecondDateTimeStringStrategy.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; import java.text.SimpleDateFormat; import java.util.Calendar; diff --git a/src/main/java/caosdb/datetime/SemiCompleteDateTime.java b/src/main/java/org/caosdb/datetime/SemiCompleteDateTime.java similarity index 98% rename from src/main/java/caosdb/datetime/SemiCompleteDateTime.java rename to src/main/java/org/caosdb/datetime/SemiCompleteDateTime.java index 55a7f5d567f1ec5be9902135f45393699195d549..5bd4daca00dae6c70473b76147736e65dcc2da68 100644 --- a/src/main/java/caosdb/datetime/SemiCompleteDateTime.java +++ b/src/main/java/org/caosdb/datetime/SemiCompleteDateTime.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; -import caosdb.server.datatype.AbstractDatatype.Table; import java.util.TimeZone; +import org.caosdb.server.datatype.AbstractDatatype.Table; import org.jdom2.Element; public class SemiCompleteDateTime extends FragmentDateTime implements Interval { diff --git a/src/main/java/caosdb/datetime/UTCDateTime.java b/src/main/java/org/caosdb/datetime/UTCDateTime.java similarity index 99% rename from src/main/java/caosdb/datetime/UTCDateTime.java rename to src/main/java/org/caosdb/datetime/UTCDateTime.java index db66ef0ad08abf0d52a8f3b1b97c6a20cc613c8a..0ecb3ac60dfe796692c344e590f3935c36fceac3 100644 --- a/src/main/java/caosdb/datetime/UTCDateTime.java +++ b/src/main/java/org/caosdb/datetime/UTCDateTime.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; -import caosdb.server.datatype.AbstractDatatype.Table; import java.util.ArrayList; import java.util.Calendar; import java.util.GregorianCalendar; import java.util.TimeZone; +import org.caosdb.server.datatype.AbstractDatatype.Table; import org.jdom2.Element; public class UTCDateTime implements Interval { diff --git a/src/main/java/caosdb/datetime/UTCTimeZoneShift.java b/src/main/java/org/caosdb/datetime/UTCTimeZoneShift.java similarity index 99% rename from src/main/java/caosdb/datetime/UTCTimeZoneShift.java rename to src/main/java/org/caosdb/datetime/UTCTimeZoneShift.java index a5930d7d72250749d351000343e92ee4b24a02ac..b601e68c6933518db2f579fa5ffcc7f46c28906f 100644 --- a/src/main/java/caosdb/datetime/UTCTimeZoneShift.java +++ b/src/main/java/org/caosdb/datetime/UTCTimeZoneShift.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; import java.util.Date; import java.util.TimeZone; diff --git a/src/main/java/caosdb/server/CaosAuthenticator.java b/src/main/java/org/caosdb/server/CaosAuthenticator.java similarity index 91% rename from src/main/java/caosdb/server/CaosAuthenticator.java rename to src/main/java/org/caosdb/server/CaosAuthenticator.java index 8fefee3b453dabc0c613228e2495acacb19deaa0..b26e50008e47fbf471e8721423aff9b583ce571a 100644 --- a/src/main/java/caosdb/server/CaosAuthenticator.java +++ b/src/main/java/org/caosdb/server/CaosAuthenticator.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server; +package org.caosdb.server; -import caosdb.server.accessControl.AnonymousAuthenticationToken; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.resource.DefaultResource; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.SecurityUtils; import org.apache.shiro.authc.AuthenticationException; import org.apache.shiro.authc.AuthenticationToken; import org.apache.shiro.subject.Subject; +import org.caosdb.server.accessControl.AnonymousAuthenticationToken; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.resource.DefaultResource; +import org.caosdb.server.utils.ServerMessages; import org.restlet.Context; import org.restlet.Request; import org.restlet.Response; diff --git a/src/main/java/caosdb/server/CaosAuthorizer.java b/src/main/java/org/caosdb/server/CaosAuthorizer.java similarity index 92% rename from src/main/java/caosdb/server/CaosAuthorizer.java rename to src/main/java/org/caosdb/server/CaosAuthorizer.java index 7b0e0194b8aeb2e5f7a33e0e6be8d2ff52afaf6e..58e814a374ae2d7c5018d041b23eb4fdafa39ef0 100644 --- a/src/main/java/caosdb/server/CaosAuthorizer.java +++ b/src/main/java/org/caosdb/server/CaosAuthorizer.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server; +package org.caosdb.server; -import caosdb.server.resource.DefaultResource; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.resource.DefaultResource; +import org.caosdb.server.utils.ServerMessages; import org.restlet.Request; import org.restlet.Response; import org.restlet.security.Authorizer; diff --git a/src/main/java/caosdb/server/CaosDBException.java b/src/main/java/org/caosdb/server/CaosDBException.java similarity index 97% rename from src/main/java/caosdb/server/CaosDBException.java rename to src/main/java/org/caosdb/server/CaosDBException.java index 3e0e50769cd3f08423ea83fa851b2cdfca54e50f..e01882bf815afbfb63ddd10a440167a41aa6f141 100644 --- a/src/main/java/caosdb/server/CaosDBException.java +++ b/src/main/java/org/caosdb/server/CaosDBException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server; +package org.caosdb.server; public class CaosDBException extends RuntimeException { diff --git a/src/main/java/caosdb/server/CaosDBServer.java b/src/main/java/org/caosdb/server/CaosDBServer.java similarity index 92% rename from src/main/java/caosdb/server/CaosDBServer.java rename to src/main/java/org/caosdb/server/CaosDBServer.java index cdee262f08836071d19e5a75038f4291a917b1ff..bad0bb353c014a96deb63e03553da604ac8c3bc4 100644 --- a/src/main/java/caosdb/server/CaosDBServer.java +++ b/src/main/java/org/caosdb/server/CaosDBServer.java @@ -17,53 +17,8 @@ * * ** end header */ -package caosdb.server; - -import caosdb.server.accessControl.AnonymousAuthenticationToken; -import caosdb.server.accessControl.AnonymousRealm; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.accessControl.CaosDBAuthorizingRealm; -import caosdb.server.accessControl.CaosDBDefaultRealm; -import caosdb.server.accessControl.ConsumedInfoCleanupJob; -import caosdb.server.accessControl.OneTimeAuthenticationToken; -import caosdb.server.accessControl.SessionToken; -import caosdb.server.accessControl.SessionTokenRealm; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.RetrieveDatatypes; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Role; -import caosdb.server.entity.container.Container; -import caosdb.server.logging.RequestErrorLogMessage; -import caosdb.server.resource.AuthenticationResource; -import caosdb.server.resource.DefaultResource; -import caosdb.server.resource.EntityOwnerResource; -import caosdb.server.resource.EntityPermissionsResource; -import caosdb.server.resource.FileSystemResource; -import caosdb.server.resource.InfoResource; -import caosdb.server.resource.LogoutResource; -import caosdb.server.resource.PermissionRulesResource; -import caosdb.server.resource.RolesResource; -import caosdb.server.resource.ScriptingResource; -import caosdb.server.resource.ServerLogsResource; -import caosdb.server.resource.ServerPropertiesResource; -import caosdb.server.resource.SharedFileResource; -import caosdb.server.resource.ThumbnailsResource; -import caosdb.server.resource.UserResource; -import caosdb.server.resource.UserRolesResource; -import caosdb.server.resource.Webinterface; -import caosdb.server.resource.WebinterfaceBuildNumber; -import caosdb.server.resource.transaction.EntityNamesResource; -import caosdb.server.resource.transaction.EntityResource; -import caosdb.server.terminal.CaosDBTerminal; -import caosdb.server.terminal.StatsPanel; -import caosdb.server.terminal.SystemErrPanel; -import caosdb.server.transaction.ChecksumUpdater; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.Initialization; -import caosdb.server.utils.NullPrintStream; +package org.caosdb.server; + import java.io.BufferedReader; import java.io.FileNotFoundException; import java.io.IOException; @@ -85,6 +40,51 @@ import org.apache.shiro.env.BasicIniEnvironment; import org.apache.shiro.mgt.SecurityManager; import org.apache.shiro.subject.Subject; import org.apache.shiro.util.ThreadContext; +import org.caosdb.server.accessControl.AnonymousAuthenticationToken; +import org.caosdb.server.accessControl.AnonymousRealm; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.accessControl.CaosDBAuthorizingRealm; +import org.caosdb.server.accessControl.CaosDBDefaultRealm; +import org.caosdb.server.accessControl.ConsumedInfoCleanupJob; +import org.caosdb.server.accessControl.OneTimeAuthenticationToken; +import org.caosdb.server.accessControl.SessionToken; +import org.caosdb.server.accessControl.SessionTokenRealm; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.RetrieveDatatypes; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.container.Container; +import org.caosdb.server.logging.RequestErrorLogMessage; +import org.caosdb.server.resource.AuthenticationResource; +import org.caosdb.server.resource.DefaultResource; +import org.caosdb.server.resource.EntityOwnerResource; +import org.caosdb.server.resource.EntityPermissionsResource; +import org.caosdb.server.resource.FileSystemResource; +import org.caosdb.server.resource.InfoResource; +import org.caosdb.server.resource.LogoutResource; +import org.caosdb.server.resource.PermissionRulesResource; +import org.caosdb.server.resource.RolesResource; +import org.caosdb.server.resource.ScriptingResource; +import org.caosdb.server.resource.ServerLogsResource; +import org.caosdb.server.resource.ServerPropertiesResource; +import org.caosdb.server.resource.SharedFileResource; +import org.caosdb.server.resource.ThumbnailsResource; +import org.caosdb.server.resource.UserResource; +import org.caosdb.server.resource.UserRolesResource; +import org.caosdb.server.resource.Webinterface; +import org.caosdb.server.resource.WebinterfaceBuildNumber; +import org.caosdb.server.resource.transaction.EntityNamesResource; +import org.caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.terminal.CaosDBTerminal; +import org.caosdb.server.terminal.StatsPanel; +import org.caosdb.server.terminal.SystemErrPanel; +import org.caosdb.server.transaction.ChecksumUpdater; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.Initialization; +import org.caosdb.server.utils.NullPrintStream; import org.quartz.JobDetail; import org.quartz.Scheduler; import org.quartz.SchedulerException; diff --git a/src/main/java/caosdb/server/CaosDBServerConnectorHelper.java b/src/main/java/org/caosdb/server/CaosDBServerConnectorHelper.java similarity index 98% rename from src/main/java/caosdb/server/CaosDBServerConnectorHelper.java rename to src/main/java/org/caosdb/server/CaosDBServerConnectorHelper.java index 718d9a5ed5d4007c5c5b6b5b24b940e6973c8f34..8a9749bc2225d71b87ea338a88db3f9aa9596bba 100644 --- a/src/main/java/caosdb/server/CaosDBServerConnectorHelper.java +++ b/src/main/java/org/caosdb/server/CaosDBServerConnectorHelper.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server; +package org.caosdb.server; import java.util.LinkedList; import org.restlet.Server; diff --git a/src/main/java/caosdb/server/FileSystem.java b/src/main/java/org/caosdb/server/FileSystem.java similarity index 95% rename from src/main/java/caosdb/server/FileSystem.java rename to src/main/java/org/caosdb/server/FileSystem.java index 79e764b96d3b477a57b90b83b1a3f437a1d21266..6bff612ca69acc24b699f8807b6969e343c60fb3 100644 --- a/src/main/java/caosdb/server/FileSystem.java +++ b/src/main/java/org/caosdb/server/FileSystem.java @@ -22,18 +22,8 @@ * ** end header */ -package caosdb.server; - -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.GetFileRecordByPath; -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.Utils; +package org.caosdb.server; + import com.google.common.io.Files; import java.io.File; import java.io.FileOutputStream; @@ -45,6 +35,16 @@ import java.security.MessageDigest; import java.security.NoSuchAlgorithmException; import java.util.regex.Pattern; import org.apache.commons.fileupload.FileItemStream; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.GetFileRecordByPath; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.Utils; public class FileSystem { private static String filesystem = null; diff --git a/src/main/java/caosdb/server/HttpToHttpsRedirector.java b/src/main/java/org/caosdb/server/HttpToHttpsRedirector.java similarity index 98% rename from src/main/java/caosdb/server/HttpToHttpsRedirector.java rename to src/main/java/org/caosdb/server/HttpToHttpsRedirector.java index 6e250028bbec9450bb2984d9cf1922d0d4e45cb5..5f15406faa837d311a8e5bf62b5e8dd28209d094 100644 --- a/src/main/java/caosdb/server/HttpToHttpsRedirector.java +++ b/src/main/java/org/caosdb/server/HttpToHttpsRedirector.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server; +package org.caosdb.server; import org.restlet.Request; import org.restlet.Response; diff --git a/src/main/java/caosdb/server/ServerProperties.java b/src/main/java/org/caosdb/server/ServerProperties.java similarity index 99% rename from src/main/java/caosdb/server/ServerProperties.java rename to src/main/java/org/caosdb/server/ServerProperties.java index 29ba470ddbcad0e79db210917234562c4b58620a..d2f8e14dcbf66337bea28ef7276264c5b8dbf8f2 100644 --- a/src/main/java/caosdb/server/ServerProperties.java +++ b/src/main/java/org/caosdb/server/ServerProperties.java @@ -22,7 +22,7 @@ * * ** end header */ -package caosdb.server; +package org.caosdb.server; import java.io.BufferedInputStream; import java.io.File; diff --git a/src/main/java/caosdb/server/ServerPropertiesSerializer.java b/src/main/java/org/caosdb/server/ServerPropertiesSerializer.java similarity index 92% rename from src/main/java/caosdb/server/ServerPropertiesSerializer.java rename to src/main/java/org/caosdb/server/ServerPropertiesSerializer.java index 10189f99e2ff30a2d9306ad9dc007810607747dd..f68538a3aa8bb15ec6f53944dfb072e20dfbc557 100644 --- a/src/main/java/caosdb/server/ServerPropertiesSerializer.java +++ b/src/main/java/org/caosdb/server/ServerPropertiesSerializer.java @@ -1,10 +1,10 @@ -package caosdb.server; +package org.caosdb.server; -import caosdb.server.utils.Serializer; import java.util.ArrayList; import java.util.Collections; import java.util.List; import java.util.Properties; +import org.caosdb.server.utils.Serializer; import org.jdom2.Element; public class ServerPropertiesSerializer implements Serializer<Properties, Element> { diff --git a/src/main/java/caosdb/server/accessControl/ACMPermissions.java b/src/main/java/org/caosdb/server/accessControl/ACMPermissions.java similarity index 98% rename from src/main/java/caosdb/server/accessControl/ACMPermissions.java rename to src/main/java/org/caosdb/server/accessControl/ACMPermissions.java index 29988106b842fbd2b825899093e102a7448e8951..84844e892297e68d2ad22cbf5dad935612d1c4f4 100644 --- a/src/main/java/caosdb/server/accessControl/ACMPermissions.java +++ b/src/main/java/org/caosdb/server/accessControl/ACMPermissions.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; public class ACMPermissions { diff --git a/src/main/java/caosdb/server/accessControl/AnonymousAuthenticationToken.java b/src/main/java/org/caosdb/server/accessControl/AnonymousAuthenticationToken.java similarity index 97% rename from src/main/java/caosdb/server/accessControl/AnonymousAuthenticationToken.java rename to src/main/java/org/caosdb/server/accessControl/AnonymousAuthenticationToken.java index f3f62af2af319d342977a7fe2524b353f8e7adab..fcbf8c4343b89e7be797194b3ebf8d56276236da 100644 --- a/src/main/java/caosdb/server/accessControl/AnonymousAuthenticationToken.java +++ b/src/main/java/org/caosdb/server/accessControl/AnonymousAuthenticationToken.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import org.apache.shiro.authc.AuthenticationToken; diff --git a/src/main/java/caosdb/server/accessControl/AnonymousRealm.java b/src/main/java/org/caosdb/server/accessControl/AnonymousRealm.java similarity index 97% rename from src/main/java/caosdb/server/accessControl/AnonymousRealm.java rename to src/main/java/org/caosdb/server/accessControl/AnonymousRealm.java index 831d45a727c95277c9d64624e136b2a2e120b3b4..006400bf649619390d5eaa642642a73b6a94f337 100644 --- a/src/main/java/caosdb/server/accessControl/AnonymousRealm.java +++ b/src/main/java/org/caosdb/server/accessControl/AnonymousRealm.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import org.apache.shiro.authc.AuthenticationInfo; import org.apache.shiro.authc.AuthenticationToken; diff --git a/src/main/java/caosdb/server/accessControl/AuthenticationUtils.java b/src/main/java/org/caosdb/server/accessControl/AuthenticationUtils.java similarity index 95% rename from src/main/java/caosdb/server/accessControl/AuthenticationUtils.java rename to src/main/java/org/caosdb/server/accessControl/AuthenticationUtils.java index c3576031da2d9a598bd74a07fe12df62ed7de90d..e6907f40b57b5ef44dc9c4772327ddf8920df173 100644 --- a/src/main/java/caosdb/server/accessControl/AuthenticationUtils.java +++ b/src/main/java/org/caosdb/server/accessControl/AuthenticationUtils.java @@ -22,19 +22,19 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import static caosdb.server.utils.Utils.URLDecodeWithUTF8; +import static org.caosdb.server.utils.Utils.URLDecodeWithUTF8; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.permissions.ResponsibleAgent; -import caosdb.server.permissions.Role; -import caosdb.server.utils.Utils; import java.sql.Timestamp; import java.util.Collection; import java.util.LinkedList; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.permissions.ResponsibleAgent; +import org.caosdb.server.permissions.Role; +import org.caosdb.server.utils.Utils; import org.restlet.data.Cookie; import org.restlet.data.CookieSetting; diff --git a/src/main/java/caosdb/server/accessControl/CaosDBAuthorizingRealm.java b/src/main/java/org/caosdb/server/accessControl/CaosDBAuthorizingRealm.java similarity index 98% rename from src/main/java/caosdb/server/accessControl/CaosDBAuthorizingRealm.java rename to src/main/java/org/caosdb/server/accessControl/CaosDBAuthorizingRealm.java index abd52d9ed306f43c51d8bf52bdf1c25d86d8454e..e10a0b29b38b2e246bde8c89c43a8b82a9307b7e 100644 --- a/src/main/java/caosdb/server/accessControl/CaosDBAuthorizingRealm.java +++ b/src/main/java/org/caosdb/server/accessControl/CaosDBAuthorizingRealm.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import java.util.Collection; import java.util.Set; diff --git a/src/main/java/caosdb/server/accessControl/CaosDBDefaultRealm.java b/src/main/java/org/caosdb/server/accessControl/CaosDBDefaultRealm.java similarity index 98% rename from src/main/java/caosdb/server/accessControl/CaosDBDefaultRealm.java rename to src/main/java/org/caosdb/server/accessControl/CaosDBDefaultRealm.java index 209487b751c0b73b5fd9085827295d5eb2ce831d..47fe71fd9dc3407c736998e79524f034933936a9 100644 --- a/src/main/java/caosdb/server/accessControl/CaosDBDefaultRealm.java +++ b/src/main/java/org/caosdb/server/accessControl/CaosDBDefaultRealm.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import org.apache.shiro.authc.AuthenticationInfo; import org.apache.shiro.authc.AuthenticationToken; diff --git a/src/main/java/caosdb/server/accessControl/CaosDBRolePermissionResolver.java b/src/main/java/org/caosdb/server/accessControl/CaosDBRolePermissionResolver.java similarity index 85% rename from src/main/java/caosdb/server/accessControl/CaosDBRolePermissionResolver.java rename to src/main/java/org/caosdb/server/accessControl/CaosDBRolePermissionResolver.java index ae4c38605f07f5222499e076def3a3d48c31a385..17637b010a1ddcd7ed88e3ba448e3fa68b894b43 100644 --- a/src/main/java/caosdb/server/accessControl/CaosDBRolePermissionResolver.java +++ b/src/main/java/org/caosdb/server/accessControl/CaosDBRolePermissionResolver.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.entity.Message; -import caosdb.server.permissions.CaosPermission; -import caosdb.server.permissions.PermissionRule; -import caosdb.server.transaction.RetrievePermissionRulesTransaction; -import caosdb.server.utils.ServerMessages; import java.util.HashSet; import java.util.Set; import org.apache.shiro.authc.AuthenticationException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.permissions.CaosPermission; +import org.caosdb.server.permissions.PermissionRule; +import org.caosdb.server.transaction.RetrievePermissionRulesTransaction; +import org.caosdb.server.utils.ServerMessages; public class CaosDBRolePermissionResolver { diff --git a/src/main/java/caosdb/server/accessControl/Config.java b/src/main/java/org/caosdb/server/accessControl/Config.java similarity index 97% rename from src/main/java/caosdb/server/accessControl/Config.java rename to src/main/java/org/caosdb/server/accessControl/Config.java index 3da7a426a9dcecfb93264cb9e504a157b10659c8..4c50b445127c089dd1be7151dc6d35825877a2ae 100644 --- a/src/main/java/caosdb/server/accessControl/Config.java +++ b/src/main/java/org/caosdb/server/accessControl/Config.java @@ -1,4 +1,4 @@ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; public class Config { private String[] permissions = {}; diff --git a/src/main/java/caosdb/server/accessControl/ConsumedInfoCleanupJob.java b/src/main/java/org/caosdb/server/accessControl/ConsumedInfoCleanupJob.java similarity index 91% rename from src/main/java/caosdb/server/accessControl/ConsumedInfoCleanupJob.java rename to src/main/java/org/caosdb/server/accessControl/ConsumedInfoCleanupJob.java index 1f62fa0a8fc72604d885c24123c3d0c17cb49a0a..b5945c5cd2dbec86a7de6ffa265c65706342f86e 100644 --- a/src/main/java/caosdb/server/accessControl/ConsumedInfoCleanupJob.java +++ b/src/main/java/org/caosdb/server/accessControl/ConsumedInfoCleanupJob.java @@ -1,6 +1,6 @@ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.CaosDBServer; +import org.caosdb.server.CaosDBServer; import org.quartz.CronScheduleBuilder; import org.quartz.Job; import org.quartz.JobBuilder; diff --git a/src/main/java/caosdb/server/accessControl/CredentialsValidator.java b/src/main/java/org/caosdb/server/accessControl/CredentialsValidator.java similarity index 96% rename from src/main/java/caosdb/server/accessControl/CredentialsValidator.java rename to src/main/java/org/caosdb/server/accessControl/CredentialsValidator.java index 1c9474eb8d40ae7c28188be3c9b62bc73288978d..dfcbe8dfe5a2c840b2674c0fa419df185fe638ad 100644 --- a/src/main/java/caosdb/server/accessControl/CredentialsValidator.java +++ b/src/main/java/org/caosdb/server/accessControl/CredentialsValidator.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; public interface CredentialsValidator<T> { diff --git a/src/main/java/caosdb/server/accessControl/HashPasswordValidator.java b/src/main/java/org/caosdb/server/accessControl/HashPasswordValidator.java similarity index 95% rename from src/main/java/caosdb/server/accessControl/HashPasswordValidator.java rename to src/main/java/org/caosdb/server/accessControl/HashPasswordValidator.java index 2d883d906b633e5e1d4d313e2334844e1e7670fa..dcf1e3feabbb1e6855844169f03961d5ad71532a 100644 --- a/src/main/java/caosdb/server/accessControl/HashPasswordValidator.java +++ b/src/main/java/org/caosdb/server/accessControl/HashPasswordValidator.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.utils.Utils; import java.security.MessageDigest; import java.security.NoSuchAlgorithmException; +import org.caosdb.server.utils.Utils; public class HashPasswordValidator implements CredentialsValidator<String> { diff --git a/src/main/java/caosdb/server/accessControl/InternalUserSource.java b/src/main/java/org/caosdb/server/accessControl/InternalUserSource.java similarity index 91% rename from src/main/java/caosdb/server/accessControl/InternalUserSource.java rename to src/main/java/org/caosdb/server/accessControl/InternalUserSource.java index 16e795aa9b7228c4f14f11bbb0d2178a4f7517a0..23f772dfbd24aef21a6335ce4bc6df392e082078 100644 --- a/src/main/java/caosdb/server/accessControl/InternalUserSource.java +++ b/src/main/java/org/caosdb/server/accessControl/InternalUserSource.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.entity.Message; -import caosdb.server.transaction.RetrievePasswordValidatorTransaction; -import caosdb.server.transaction.RetrieveUserTransaction; -import caosdb.server.utils.ServerMessages; import java.util.Map; import java.util.Set; import org.apache.shiro.authc.AuthenticationException; import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.transaction.RetrievePasswordValidatorTransaction; +import org.caosdb.server.transaction.RetrieveUserTransaction; +import org.caosdb.server.utils.ServerMessages; public class InternalUserSource implements UserSource { diff --git a/src/main/java/caosdb/server/accessControl/Mode.java b/src/main/java/org/caosdb/server/accessControl/Mode.java similarity index 95% rename from src/main/java/caosdb/server/accessControl/Mode.java rename to src/main/java/org/caosdb/server/accessControl/Mode.java index de7af914ae2b120a279da3fe936b1e67845fd0cb..8f91a9ba6eb6fc8c35a0cb519e0e7820e3628f57 100644 --- a/src/main/java/caosdb/server/accessControl/Mode.java +++ b/src/main/java/org/caosdb/server/accessControl/Mode.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; public enum Mode { ONETIME, diff --git a/src/main/java/caosdb/server/accessControl/OneTimeAuthenticationToken.java b/src/main/java/org/caosdb/server/accessControl/OneTimeAuthenticationToken.java similarity index 98% rename from src/main/java/caosdb/server/accessControl/OneTimeAuthenticationToken.java rename to src/main/java/org/caosdb/server/accessControl/OneTimeAuthenticationToken.java index 8dddf77b092cb951695ecaa15191856a3909793f..bde27876d78f846e1ed4ca19b878705814a4e52a 100644 --- a/src/main/java/caosdb/server/accessControl/OneTimeAuthenticationToken.java +++ b/src/main/java/org/caosdb/server/accessControl/OneTimeAuthenticationToken.java @@ -22,10 +22,8 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectReader; import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; @@ -38,6 +36,8 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; import org.eclipse.jetty.util.ajax.JSON; import org.quartz.SchedulerException; import org.slf4j.Logger; diff --git a/src/main/java/caosdb/server/accessControl/OneTimeTokenConsumedInfo.java b/src/main/java/org/caosdb/server/accessControl/OneTimeTokenConsumedInfo.java similarity index 98% rename from src/main/java/caosdb/server/accessControl/OneTimeTokenConsumedInfo.java rename to src/main/java/org/caosdb/server/accessControl/OneTimeTokenConsumedInfo.java index a8ebd2c807712d8b06ec68771e7abb8082ce0696..20c648b2d6b4aa2a492de6bc4bb6d1f5465eea27 100644 --- a/src/main/java/caosdb/server/accessControl/OneTimeTokenConsumedInfo.java +++ b/src/main/java/org/caosdb/server/accessControl/OneTimeTokenConsumedInfo.java @@ -1,4 +1,4 @@ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import java.util.HashMap; import java.util.Iterator; diff --git a/src/main/java/caosdb/server/accessControl/OneTimeTokenToFile.java b/src/main/java/org/caosdb/server/accessControl/OneTimeTokenToFile.java similarity index 96% rename from src/main/java/caosdb/server/accessControl/OneTimeTokenToFile.java rename to src/main/java/org/caosdb/server/accessControl/OneTimeTokenToFile.java index b4006783a2105a353749edfaa475bde3dae93808..46017701069f9f184bf50b8bab285014cd8a47ad 100644 --- a/src/main/java/caosdb/server/accessControl/OneTimeTokenToFile.java +++ b/src/main/java/org/caosdb/server/accessControl/OneTimeTokenToFile.java @@ -1,10 +1,10 @@ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.CaosDBServer; import com.google.common.io.Files; import java.io.File; import java.io.IOException; import java.io.PrintWriter; +import org.caosdb.server.CaosDBServer; import org.quartz.CronScheduleBuilder; import org.quartz.Job; import org.quartz.JobBuilder; diff --git a/src/main/java/caosdb/server/accessControl/Pam.java b/src/main/java/org/caosdb/server/accessControl/Pam.java similarity index 99% rename from src/main/java/caosdb/server/accessControl/Pam.java rename to src/main/java/org/caosdb/server/accessControl/Pam.java index 0cae6fd74ae3924e868757e1f058a430a23b1ff3..992665c1db3ef42d3770c71e89fa5444f43f9d95 100644 --- a/src/main/java/caosdb/server/accessControl/Pam.java +++ b/src/main/java/org/caosdb/server/accessControl/Pam.java @@ -23,9 +23,8 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.caching.Cache; import java.io.File; import java.io.IOException; import java.util.HashSet; @@ -36,6 +35,7 @@ import org.apache.commons.jcs.access.behavior.ICacheAccess; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.caching.Cache; import org.jvnet.libpam.PAMException; import org.jvnet.libpam.UnixUser; diff --git a/src/main/java/caosdb/server/accessControl/PamScriptCaller.java b/src/main/java/org/caosdb/server/accessControl/PamScriptCaller.java similarity index 96% rename from src/main/java/caosdb/server/accessControl/PamScriptCaller.java rename to src/main/java/org/caosdb/server/accessControl/PamScriptCaller.java index 4cf1836df953b78f0fccb4801a85205b11869b18..dc9137e0192cb73d35ae6579b760a8d4f56685b7 100644 --- a/src/main/java/caosdb/server/accessControl/PamScriptCaller.java +++ b/src/main/java/org/caosdb/server/accessControl/PamScriptCaller.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; public interface PamScriptCaller { public boolean isValid(String username, String password); diff --git a/src/main/java/caosdb/server/accessControl/Principal.java b/src/main/java/org/caosdb/server/accessControl/Principal.java similarity index 96% rename from src/main/java/caosdb/server/accessControl/Principal.java rename to src/main/java/org/caosdb/server/accessControl/Principal.java index 6a95dd79eccd50c9358928909822af67056102db..fc96fb99670b51d0a128710722e2c10effed152a 100644 --- a/src/main/java/caosdb/server/accessControl/Principal.java +++ b/src/main/java/org/caosdb/server/accessControl/Principal.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.permissions.ResponsibleAgent; import java.util.HashMap; +import org.caosdb.server.permissions.ResponsibleAgent; import org.jdom2.Element; public class Principal implements ResponsibleAgent { diff --git a/src/main/java/caosdb/server/accessControl/RealmUsernamePasswordToken.java b/src/main/java/org/caosdb/server/accessControl/RealmUsernamePasswordToken.java similarity index 97% rename from src/main/java/caosdb/server/accessControl/RealmUsernamePasswordToken.java rename to src/main/java/org/caosdb/server/accessControl/RealmUsernamePasswordToken.java index e07db9a603991a09ffb74d155697bc9b1583489d..9455df70220074121505b7dac2af31bbb549a153 100644 --- a/src/main/java/caosdb/server/accessControl/RealmUsernamePasswordToken.java +++ b/src/main/java/org/caosdb/server/accessControl/RealmUsernamePasswordToken.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import org.apache.shiro.authc.AuthenticationToken; diff --git a/src/main/java/caosdb/server/accessControl/Role.java b/src/main/java/org/caosdb/server/accessControl/Role.java similarity index 96% rename from src/main/java/caosdb/server/accessControl/Role.java rename to src/main/java/org/caosdb/server/accessControl/Role.java index e19e245905bc0f90b4e4b004fce75e2e1203eb4f..e01f344cef248ae720975d29096ff363726a30f7 100644 --- a/src/main/java/caosdb/server/accessControl/Role.java +++ b/src/main/java/org/caosdb/server/accessControl/Role.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import java.io.Serializable; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/accessControl/SelfValidatingAuthenticationToken.java b/src/main/java/org/caosdb/server/accessControl/SelfValidatingAuthenticationToken.java similarity index 99% rename from src/main/java/caosdb/server/accessControl/SelfValidatingAuthenticationToken.java rename to src/main/java/org/caosdb/server/accessControl/SelfValidatingAuthenticationToken.java index 119a86248b83a472df0d2981db43d9a6cc1962f0..4291c5f65ddd8cb413922bd6fc1993ed8068c662 100644 --- a/src/main/java/caosdb/server/accessControl/SelfValidatingAuthenticationToken.java +++ b/src/main/java/org/caosdb/server/accessControl/SelfValidatingAuthenticationToken.java @@ -22,13 +22,13 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.utils.Utils; import java.util.Arrays; import java.util.Collection; import org.apache.shiro.authc.AuthenticationException; import org.apache.shiro.authc.AuthenticationToken; +import org.caosdb.server.utils.Utils; import org.eclipse.jetty.util.ajax.JSON; /** diff --git a/src/main/java/caosdb/server/accessControl/SessionToken.java b/src/main/java/org/caosdb/server/accessControl/SessionToken.java similarity index 97% rename from src/main/java/caosdb/server/accessControl/SessionToken.java rename to src/main/java/org/caosdb/server/accessControl/SessionToken.java index d24b4afeb739d764947092783c544168a6c0cf3f..5696af687dbc4130573fd27dc66547b88eab690d 100644 --- a/src/main/java/caosdb/server/accessControl/SessionToken.java +++ b/src/main/java/org/caosdb/server/accessControl/SessionToken.java @@ -23,11 +23,11 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; import org.eclipse.jetty.util.ajax.JSON; /** diff --git a/src/main/java/caosdb/server/accessControl/SessionTokenRealm.java b/src/main/java/org/caosdb/server/accessControl/SessionTokenRealm.java similarity index 97% rename from src/main/java/caosdb/server/accessControl/SessionTokenRealm.java rename to src/main/java/org/caosdb/server/accessControl/SessionTokenRealm.java index cce2850d6d532ae8880d208682b5677dc0369089..d78ffb405a8470a005da54736e25fbd69340b7e5 100644 --- a/src/main/java/caosdb/server/accessControl/SessionTokenRealm.java +++ b/src/main/java/org/caosdb/server/accessControl/SessionTokenRealm.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import org.apache.shiro.authc.AuthenticationInfo; import org.apache.shiro.authc.AuthenticationToken; diff --git a/src/main/java/caosdb/server/accessControl/UserSource.java b/src/main/java/org/caosdb/server/accessControl/UserSource.java similarity index 98% rename from src/main/java/caosdb/server/accessControl/UserSource.java rename to src/main/java/org/caosdb/server/accessControl/UserSource.java index 0ece8d5014227916feb1c50b986aaf4d9a9bf91b..ff9882bfbf581e3633d99c3a20c5113e1d329e55 100644 --- a/src/main/java/caosdb/server/accessControl/UserSource.java +++ b/src/main/java/org/caosdb/server/accessControl/UserSource.java @@ -22,7 +22,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import java.util.Map; import java.util.Set; diff --git a/src/main/java/caosdb/server/accessControl/UserSources.java b/src/main/java/org/caosdb/server/accessControl/UserSources.java similarity index 95% rename from src/main/java/caosdb/server/accessControl/UserSources.java rename to src/main/java/org/caosdb/server/accessControl/UserSources.java index cdf219c017608c621a59d427b2132630fef0631d..9e5663edbfe0a41f58d39362a369cda9773eaef1 100644 --- a/src/main/java/caosdb/server/accessControl/UserSources.java +++ b/src/main/java/org/caosdb/server/accessControl/UserSources.java @@ -22,15 +22,8 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.entity.Message; -import caosdb.server.permissions.Role; -import caosdb.server.transaction.RetrieveRoleTransaction; -import caosdb.server.transaction.RetrieveUserTransaction; -import caosdb.server.utils.ServerMessages; import java.io.FileInputStream; import java.io.IOException; import java.lang.reflect.InvocationTargetException; @@ -39,6 +32,13 @@ import java.util.HashSet; import java.util.Set; import org.apache.shiro.authc.AuthenticationException; import org.apache.shiro.config.Ini; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.permissions.Role; +import org.caosdb.server.transaction.RetrieveRoleTransaction; +import org.caosdb.server.transaction.RetrieveUserTransaction; +import org.caosdb.server.utils.ServerMessages; import org.slf4j.Logger; import org.slf4j.LoggerFactory; diff --git a/src/main/java/caosdb/server/accessControl/UserStatus.java b/src/main/java/org/caosdb/server/accessControl/UserStatus.java similarity index 95% rename from src/main/java/caosdb/server/accessControl/UserStatus.java rename to src/main/java/org/caosdb/server/accessControl/UserStatus.java index 5acf24f0daf8891f21bdee83062d8c6ee6f77ab4..6091d3e146eb5eb835044f97d1dcbafd8d042135 100644 --- a/src/main/java/caosdb/server/accessControl/UserStatus.java +++ b/src/main/java/org/caosdb/server/accessControl/UserStatus.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; public enum UserStatus { ACTIVE, diff --git a/src/main/java/caosdb/server/caching/Cache.java b/src/main/java/org/caosdb/server/caching/Cache.java similarity index 98% rename from src/main/java/caosdb/server/caching/Cache.java rename to src/main/java/org/caosdb/server/caching/Cache.java index 338b1d853fd0610be780362a0242193fa46eb320..fe5e12c5ec1e7a6acd83dbfb8f64ead676600840 100644 --- a/src/main/java/caosdb/server/caching/Cache.java +++ b/src/main/java/org/caosdb/server/caching/Cache.java @@ -22,7 +22,7 @@ * * ** end header */ -package caosdb.server.caching; +package org.caosdb.server.caching; import java.io.Serializable; import org.apache.commons.jcs.access.behavior.ICacheAccess; diff --git a/src/main/java/caosdb/server/caching/CacheHelper.java b/src/main/java/org/caosdb/server/caching/CacheHelper.java similarity index 96% rename from src/main/java/caosdb/server/caching/CacheHelper.java rename to src/main/java/org/caosdb/server/caching/CacheHelper.java index 32c854400310959a7834fe32a6f90de9e1b584d1..0dfd32da5bc125b242622384fcae54eee722e4ef 100644 --- a/src/main/java/caosdb/server/caching/CacheHelper.java +++ b/src/main/java/org/caosdb/server/caching/CacheHelper.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.caching; +package org.caosdb.server.caching; import java.io.Serializable; import org.apache.commons.jcs.access.behavior.ICacheAccess; diff --git a/src/main/java/caosdb/server/caching/JCSCacheHelper.java b/src/main/java/org/caosdb/server/caching/JCSCacheHelper.java similarity index 96% rename from src/main/java/caosdb/server/caching/JCSCacheHelper.java rename to src/main/java/org/caosdb/server/caching/JCSCacheHelper.java index c471ed7ef860d902b56940da52a876a44fd97218..1613b8be8194425ab14e5e68b9215a0ba92be8d3 100644 --- a/src/main/java/caosdb/server/caching/JCSCacheHelper.java +++ b/src/main/java/org/caosdb/server/caching/JCSCacheHelper.java @@ -22,10 +22,8 @@ * * ** end header */ -package caosdb.server.caching; +package org.caosdb.server.caching; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import java.io.FileInputStream; import java.io.FileNotFoundException; import java.io.IOException; @@ -36,6 +34,8 @@ import org.apache.commons.jcs.JCS; import org.apache.commons.jcs.access.behavior.ICacheAccess; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; /** * A CacheHelper implementation which is configured statically via the {@link diff --git a/src/main/java/org/caosdb/server/database/BackendTransaction.java b/src/main/java/org/caosdb/server/database/BackendTransaction.java new file mode 100644 index 0000000000000000000000000000000000000000..cb23dde5548b1287a3fbc0dc76f54e5978e64f46 --- /dev/null +++ b/src/main/java/org/caosdb/server/database/BackendTransaction.java @@ -0,0 +1,298 @@ +/* + * ** header v3.0 + * This file is a part of the CaosDB Project. + * + * Copyright (C) 2018 Research Group Biomedical Physics, + * Max-Planck-Institute for Dynamics and Self-Organization Göttingen + * Copyright (C) 2020 IndiScale GmbH + * Copyright (C) 2020 Timm Fitschen (t.fitschen@indiscale.com) + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <https://www.gnu.org/licenses/>. + * + * ** end header + */ +package org.caosdb.server.database; + +import java.util.HashMap; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLDeleteEntityProperties; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLDeletePassword; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLDeleteRole; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLDeleteSparseEntity; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLDeleteUser; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLGetAllNames; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLGetChildren; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLGetDependentEntities; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLGetFileRecordByPath; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLGetIDByName; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLGetInfo; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLGetUpdateableChecksums; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertEntityDatatype; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertEntityProperties; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertLinCon; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertLogRecord; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertParents; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertRole; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertSparseEntity; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLInsertTransactionHistory; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLIsSubType; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRegisterSubDomain; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveAll; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveAllUncheckedFiles; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveDatatypes; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveLogRecord; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveParents; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrievePasswordValidator; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrievePermissionRules; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveProperties; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveQueryTemplateDefinition; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveRole; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveSparseEntity; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveTransactionHistory; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveUser; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRetrieveVersionHistory; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLRuleLoader; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLSetFileCheckedTimestampImpl; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLSetPassword; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLSetPermissionRules; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLSetQueryTemplateDefinition; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLSyncStats; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLUpdateSparseEntity; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLUpdateUser; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLUpdateUserRoles; +import org.caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemCheckHash; +import org.caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemCheckSize; +import org.caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemFileExists; +import org.caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemFileWasModifiedAfter; +import org.caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemGetFileIterator; +import org.caosdb.server.database.backend.interfaces.BackendTransactionImpl; +import org.caosdb.server.database.backend.interfaces.DeleteEntityPropertiesImpl; +import org.caosdb.server.database.backend.interfaces.DeletePasswordImpl; +import org.caosdb.server.database.backend.interfaces.DeleteRoleImpl; +import org.caosdb.server.database.backend.interfaces.DeleteSparseEntityImpl; +import org.caosdb.server.database.backend.interfaces.DeleteUserImpl; +import org.caosdb.server.database.backend.interfaces.FileCheckHash; +import org.caosdb.server.database.backend.interfaces.FileCheckSize; +import org.caosdb.server.database.backend.interfaces.FileExists; +import org.caosdb.server.database.backend.interfaces.FileWasModifiedAfter; +import org.caosdb.server.database.backend.interfaces.GetAllNamesImpl; +import org.caosdb.server.database.backend.interfaces.GetChildrenImpl; +import org.caosdb.server.database.backend.interfaces.GetDependentEntitiesImpl; +import org.caosdb.server.database.backend.interfaces.GetFileIteratorImpl; +import org.caosdb.server.database.backend.interfaces.GetFileRecordByPathImpl; +import org.caosdb.server.database.backend.interfaces.GetIDByNameImpl; +import org.caosdb.server.database.backend.interfaces.GetInfoImpl; +import org.caosdb.server.database.backend.interfaces.GetUpdateableChecksumsImpl; +import org.caosdb.server.database.backend.interfaces.InsertEntityDatatypeImpl; +import org.caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; +import org.caosdb.server.database.backend.interfaces.InsertLinConImpl; +import org.caosdb.server.database.backend.interfaces.InsertLogRecordImpl; +import org.caosdb.server.database.backend.interfaces.InsertParentsImpl; +import org.caosdb.server.database.backend.interfaces.InsertRoleImpl; +import org.caosdb.server.database.backend.interfaces.InsertSparseEntityImpl; +import org.caosdb.server.database.backend.interfaces.InsertTransactionHistoryImpl; +import org.caosdb.server.database.backend.interfaces.IsSubTypeImpl; +import org.caosdb.server.database.backend.interfaces.RegisterSubDomainImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveAllImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveAllUncheckedFilesImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveDatatypesImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveLogRecordImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveParentsImpl; +import org.caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; +import org.caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; +import org.caosdb.server.database.backend.interfaces.RetrievePropertiesImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveQueryTemplateDefinitionImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveRoleImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveSparseEntityImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveTransactionHistoryImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveUserImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveVersionHistoryImpl; +import org.caosdb.server.database.backend.interfaces.RuleLoaderImpl; +import org.caosdb.server.database.backend.interfaces.SetFileCheckedTimestampImpl; +import org.caosdb.server.database.backend.interfaces.SetPasswordImpl; +import org.caosdb.server.database.backend.interfaces.SetPermissionRulesImpl; +import org.caosdb.server.database.backend.interfaces.SetQueryTemplateDefinitionImpl; +import org.caosdb.server.database.backend.interfaces.SyncStatsImpl; +import org.caosdb.server.database.backend.interfaces.UpdateSparseEntityImpl; +import org.caosdb.server.database.backend.interfaces.UpdateUserImpl; +import org.caosdb.server.database.backend.interfaces.UpdateUserRolesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.utils.UndoHandler; +import org.caosdb.server.utils.Undoable; + +public abstract class BackendTransaction implements Undoable { + + private final UndoHandler undoHandler = new UndoHandler(); + private Access access; + private TransactionBenchmark benchmark; + private static HashMap< + Class<? extends BackendTransactionImpl>, Class<? extends BackendTransactionImpl>> + impl = new HashMap<>(); + + protected abstract void execute(); + + public final void executeTransaction() { + final long t1 = System.currentTimeMillis(); + execute(); + final long t2 = System.currentTimeMillis(); + this.addMeasurement(this, t2 - t1); + } + + /** + * Intialiaze the adapters to the database backend. + * + * <p>Currently this is hard-coded to the MySQL-Backend but the architecture of this class is + * designed to make it easy in the future to choose other implementations (i.e. other back-ends) + */ + public static void init() { + if (impl.isEmpty()) { + setImpl(GetAllNamesImpl.class, MySQLGetAllNames.class); + setImpl(DeleteEntityPropertiesImpl.class, MySQLDeleteEntityProperties.class); + setImpl(DeleteSparseEntityImpl.class, MySQLDeleteSparseEntity.class); + setImpl(GetChildrenImpl.class, MySQLGetChildren.class); + setImpl(GetDependentEntitiesImpl.class, MySQLGetDependentEntities.class); + setImpl(GetIDByNameImpl.class, MySQLGetIDByName.class); + setImpl(GetInfoImpl.class, MySQLGetInfo.class); + setImpl(InsertEntityPropertiesImpl.class, MySQLInsertEntityProperties.class); + setImpl(InsertLinConImpl.class, MySQLInsertLinCon.class); + setImpl(InsertParentsImpl.class, MySQLInsertParents.class); + setImpl(InsertSparseEntityImpl.class, MySQLInsertSparseEntity.class); + setImpl(InsertTransactionHistoryImpl.class, MySQLInsertTransactionHistory.class); + setImpl(IsSubTypeImpl.class, MySQLIsSubType.class); + setImpl(UpdateSparseEntityImpl.class, MySQLUpdateSparseEntity.class); + setImpl(RetrieveAllImpl.class, MySQLRetrieveAll.class); + setImpl(RegisterSubDomainImpl.class, MySQLRegisterSubDomain.class); + setImpl(RetrieveDatatypesImpl.class, MySQLRetrieveDatatypes.class); + setImpl(RetrieveTransactionHistoryImpl.class, MySQLRetrieveTransactionHistory.class); + setImpl(RetrieveUserImpl.class, MySQLRetrieveUser.class); + setImpl(RetrieveParentsImpl.class, MySQLRetrieveParents.class); + setImpl(GetFileRecordByPathImpl.class, MySQLGetFileRecordByPath.class); + setImpl(RetrievePropertiesImpl.class, MySQLRetrieveProperties.class); + setImpl(RetrieveSparseEntityImpl.class, MySQLRetrieveSparseEntity.class); + setImpl(RuleLoaderImpl.class, MySQLRuleLoader.class); + setImpl(SyncStatsImpl.class, MySQLSyncStats.class); + setImpl(FileExists.class, UnixFileSystemFileExists.class); + setImpl(FileWasModifiedAfter.class, UnixFileSystemFileWasModifiedAfter.class); + setImpl(FileCheckHash.class, UnixFileSystemCheckHash.class); + setImpl(GetFileIteratorImpl.class, UnixFileSystemGetFileIterator.class); + setImpl(SetFileCheckedTimestampImpl.class, MySQLSetFileCheckedTimestampImpl.class); + setImpl(RetrieveAllUncheckedFilesImpl.class, MySQLRetrieveAllUncheckedFiles.class); + setImpl(UpdateUserImpl.class, MySQLUpdateUser.class); + setImpl(DeleteUserImpl.class, MySQLDeleteUser.class); + setImpl(SetPasswordImpl.class, MySQLSetPassword.class); + setImpl(RetrievePasswordValidatorImpl.class, MySQLRetrievePasswordValidator.class); + setImpl(DeletePasswordImpl.class, MySQLDeletePassword.class); + setImpl(GetUpdateableChecksumsImpl.class, MySQLGetUpdateableChecksums.class); + setImpl(FileCheckSize.class, UnixFileSystemCheckSize.class); + setImpl(InsertRoleImpl.class, MySQLInsertRole.class); + setImpl(RetrieveRoleImpl.class, MySQLRetrieveRole.class); + setImpl(DeleteRoleImpl.class, MySQLDeleteRole.class); + setImpl(SetPermissionRulesImpl.class, MySQLSetPermissionRules.class); + setImpl(RetrievePermissionRulesImpl.class, MySQLRetrievePermissionRules.class); + setImpl(UpdateUserRolesImpl.class, MySQLUpdateUserRoles.class); + setImpl(InsertLogRecordImpl.class, MySQLInsertLogRecord.class); + setImpl(RetrieveLogRecordImpl.class, MySQLRetrieveLogRecord.class); + setImpl(SetQueryTemplateDefinitionImpl.class, MySQLSetQueryTemplateDefinition.class); + setImpl( + RetrieveQueryTemplateDefinitionImpl.class, MySQLRetrieveQueryTemplateDefinition.class); + setImpl(InsertEntityDatatypeImpl.class, MySQLInsertEntityDatatype.class); + setImpl(RetrieveVersionHistoryImpl.class, MySQLRetrieveVersionHistory.class); + } + } + + /** + * Execute this BackendTransaction, using the implementation given as an argument. + * + * <p>The implementation's benchmark is set to the corresponding sub-benchmark of this object's + * benchmark. + * + * @param t This BackendTransaction's execute() method will be called. + * @return The BackendTransaction which was passed as an argument. + */ + protected <K extends BackendTransaction> K execute(final K t) { + assert t != this; + this.undoHandler.append(t); + t.setAccess(this.access); + if (benchmark != null) { + t.setTransactionBenchmark(benchmark.getBenchmark(t.getClass())); + } + final long t1 = System.currentTimeMillis(); + t.execute(); + final long t2 = System.currentTimeMillis(); + this.addMeasurement(t, t2 - t1); + return t; + } + + public static <K extends BackendTransactionImpl, L extends K> void setImpl( + final Class<K> k, final Class<L> l) { + impl.put(k, l); + } + + public void setAccess(final Access access) { + this.access = access; + } + + @SuppressWarnings("unchecked") + protected <T extends BackendTransactionImpl> T getImplementation(final Class<T> clz) { + init(); + try { + Class<?> implclz = impl.get(clz); + final T ret = (T) implclz.getConstructor(Access.class).newInstance(this.access); + if (ret instanceof Undoable) { + this.undoHandler.append((Undoable) ret); + } + if (benchmark != null) { + ret.setTransactionBenchmark(benchmark.getBenchmark(ret.getClass())); + } + return ret; + } catch (final Exception e) { + throw new TransactionException(e); + } + } + + protected UndoHandler getUndoHandler() { + return this.undoHandler; + } + + @Override + public final void undo() { + this.undoHandler.undo(); + } + + @Override + public final void cleanUp() { + this.undoHandler.cleanUp(); + } + + boolean useCache() { + return this.access.useCache(); + } + + @Override + public String toString() { + return this.getClass().getSimpleName(); + } + + /** Set the benchmark object for this AbstractTransaction. */ + public void setTransactionBenchmark(TransactionBenchmark b) { + this.benchmark = b; + } + + public void addMeasurement(Object o, long time) { + if (this.benchmark != null) { + this.benchmark.addMeasurement(o, time); + } + } +} diff --git a/src/main/java/caosdb/server/database/CacheableBackendTransaction.java b/src/main/java/org/caosdb/server/database/CacheableBackendTransaction.java similarity index 96% rename from src/main/java/caosdb/server/database/CacheableBackendTransaction.java rename to src/main/java/org/caosdb/server/database/CacheableBackendTransaction.java index 0131b740d81cbd41d1b9263c5f42029e1af4539c..621fa31cd1603633fdb259591d29abf00c6312a4 100644 --- a/src/main/java/caosdb/server/database/CacheableBackendTransaction.java +++ b/src/main/java/org/caosdb/server/database/CacheableBackendTransaction.java @@ -22,11 +22,11 @@ * * ** end header */ -package caosdb.server.database; +package org.caosdb.server.database; -import caosdb.server.database.exceptions.TransactionException; import java.io.Serializable; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.database.exceptions.TransactionException; public abstract class CacheableBackendTransaction<K, V extends Serializable> extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/ChainTransaction.java b/src/main/java/org/caosdb/server/database/ChainTransaction.java similarity index 91% rename from src/main/java/caosdb/server/database/ChainTransaction.java rename to src/main/java/org/caosdb/server/database/ChainTransaction.java index ccbd0e2b6751dbfd83a685ab687d3b0d044a9606..6adee64ade2b4633f33f4b0a5397628d63e05e7c 100644 --- a/src/main/java/caosdb/server/database/ChainTransaction.java +++ b/src/main/java/org/caosdb/server/database/ChainTransaction.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database; +package org.caosdb.server.database; -import caosdb.server.database.backend.interfaces.BackendTransactionImpl; import java.util.LinkedList; +import org.caosdb.server.database.backend.interfaces.BackendTransactionImpl; public class ChainTransaction<T extends BackendTransactionImpl> { private final LinkedList<T> chain = new LinkedList<T>(); diff --git a/src/main/java/caosdb/server/database/Database.java b/src/main/java/org/caosdb/server/database/Database.java similarity index 97% rename from src/main/java/caosdb/server/database/Database.java rename to src/main/java/org/caosdb/server/database/Database.java index d67acdff9d8fbacdbdefdfdeb5013c3838156461..797aadcced181febbc0539975ba1f46d8ee2d9de 100644 --- a/src/main/java/caosdb/server/database/Database.java +++ b/src/main/java/org/caosdb/server/database/Database.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database; +package org.caosdb.server.database; public class Database { diff --git a/src/main/java/caosdb/server/database/DatabaseMonitor.java b/src/main/java/org/caosdb/server/database/DatabaseMonitor.java similarity index 92% rename from src/main/java/caosdb/server/database/DatabaseMonitor.java rename to src/main/java/org/caosdb/server/database/DatabaseMonitor.java index 6efd782f0f02eef34fbed97c433a70464c9e4322..77e913025dba9d65607f410049affbae1249d745 100644 --- a/src/main/java/caosdb/server/database/DatabaseMonitor.java +++ b/src/main/java/org/caosdb/server/database/DatabaseMonitor.java @@ -20,26 +20,26 @@ * * ** end header */ -package caosdb.server.database; - -import caosdb.server.database.access.Access; -import caosdb.server.database.access.AccessControlAccess; -import caosdb.server.database.access.InfoAccess; -import caosdb.server.database.access.InitAccess; -import caosdb.server.database.access.TransactionAccess; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.transaction.AccessControlTransaction; -import caosdb.server.transaction.TransactionInterface; -import caosdb.server.transaction.WriteTransaction; -import caosdb.server.utils.Info; -import caosdb.server.utils.Initialization; -import caosdb.server.utils.Observable; -import caosdb.server.utils.Observer; -import caosdb.server.utils.Releasable; +package org.caosdb.server.database; + import java.util.Iterator; import java.util.LinkedList; import java.util.concurrent.Semaphore; import java.util.concurrent.locks.ReentrantLock; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.access.AccessControlAccess; +import org.caosdb.server.database.access.InfoAccess; +import org.caosdb.server.database.access.InitAccess; +import org.caosdb.server.database.access.TransactionAccess; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.transaction.AccessControlTransaction; +import org.caosdb.server.transaction.TransactionInterface; +import org.caosdb.server.transaction.WriteTransaction; +import org.caosdb.server.utils.Info; +import org.caosdb.server.utils.Initialization; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.Observer; +import org.caosdb.server.utils.Releasable; /** * Acquire and release weak access. DatabaseMonitor uses this class for managing access to entities diff --git a/src/main/java/caosdb/server/database/DatabaseUtils.java b/src/main/java/org/caosdb/server/database/DatabaseUtils.java similarity index 93% rename from src/main/java/caosdb/server/database/DatabaseUtils.java rename to src/main/java/org/caosdb/server/database/DatabaseUtils.java index 9edc0347abf8b63de0ce76ead06fb1f6883332e1..c985c1b9bc62270ccf6c5904b1c7f0147bb20de0 100644 --- a/src/main/java/caosdb/server/database/DatabaseUtils.java +++ b/src/main/java/org/caosdb/server/database/DatabaseUtils.java @@ -20,30 +20,30 @@ * * ** end header */ -package caosdb.server.database; +package org.caosdb.server.database; -import caosdb.server.database.proto.FlatProperty; -import caosdb.server.database.proto.ProtoProperty; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.database.proto.VerySparseEntity; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.CollectionValue; -import caosdb.server.datatype.IndexedSingleValue; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.datatype.SingleValue; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.Role; -import caosdb.server.entity.StatementStatus; -import caosdb.server.entity.wrapper.Domain; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.entity.wrapper.Property; import com.google.common.base.Objects; import java.sql.ResultSet; import java.sql.SQLException; import java.util.ArrayList; import java.util.HashMap; import java.util.List; +import org.caosdb.server.database.proto.FlatProperty; +import org.caosdb.server.database.proto.ProtoProperty; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.database.proto.VerySparseEntity; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.CollectionValue; +import org.caosdb.server.datatype.IndexedSingleValue; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.datatype.SingleValue; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.entity.wrapper.Domain; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.entity.wrapper.Property; public class DatabaseUtils { diff --git a/src/main/java/caosdb/server/database/access/AbstractAccess.java b/src/main/java/org/caosdb/server/database/access/AbstractAccess.java similarity index 92% rename from src/main/java/caosdb/server/database/access/AbstractAccess.java rename to src/main/java/org/caosdb/server/database/access/AbstractAccess.java index 8013c609577236761123c0902c35606be0017567..9d00a876e8db21446b88b6ab00dfeb12ee043c0d 100644 --- a/src/main/java/caosdb/server/database/access/AbstractAccess.java +++ b/src/main/java/org/caosdb/server/database/access/AbstractAccess.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.access; +package org.caosdb.server.database.access; -import caosdb.server.database.misc.DBHelper; -import caosdb.server.database.misc.RollBackHandler; -import caosdb.server.transaction.TransactionInterface; import java.util.HashMap; +import org.caosdb.server.database.misc.DBHelper; +import org.caosdb.server.database.misc.RollBackHandler; +import org.caosdb.server.transaction.TransactionInterface; public abstract class AbstractAccess<T extends TransactionInterface> implements Access { diff --git a/src/main/java/caosdb/server/database/access/Access.java b/src/main/java/org/caosdb/server/database/access/Access.java similarity index 92% rename from src/main/java/caosdb/server/database/access/Access.java rename to src/main/java/org/caosdb/server/database/access/Access.java index 0114f6723ab283f7f14094954e26001535203975..228e8e004aea7454a287bccd898794c2bb4f1b9c 100644 --- a/src/main/java/caosdb/server/database/access/Access.java +++ b/src/main/java/org/caosdb/server/database/access/Access.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.access; +package org.caosdb.server.database.access; -import caosdb.server.database.misc.DBHelper; +import org.caosdb.server.database.misc.DBHelper; public interface Access { diff --git a/src/main/java/caosdb/server/database/access/AccessControlAccess.java b/src/main/java/org/caosdb/server/database/access/AccessControlAccess.java similarity index 91% rename from src/main/java/caosdb/server/database/access/AccessControlAccess.java rename to src/main/java/org/caosdb/server/database/access/AccessControlAccess.java index 14e32a3d62d92077844779d07f5b282a74b5b0aa..450f0c61310e5706c450ad793c7485073393d4c9 100644 --- a/src/main/java/caosdb/server/database/access/AccessControlAccess.java +++ b/src/main/java/org/caosdb/server/database/access/AccessControlAccess.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.access; +package org.caosdb.server.database.access; -import caosdb.server.transaction.AccessControlTransaction; +import org.caosdb.server.transaction.AccessControlTransaction; public class AccessControlAccess extends AbstractAccess<AccessControlTransaction> { diff --git a/src/main/java/caosdb/server/database/access/InfoAccess.java b/src/main/java/org/caosdb/server/database/access/InfoAccess.java similarity index 93% rename from src/main/java/caosdb/server/database/access/InfoAccess.java rename to src/main/java/org/caosdb/server/database/access/InfoAccess.java index e26d7de1b868ca80d2cd1fd77f6ec06f2ba58bd9..3d66e67a2d243d753c98e6934688eb34e1e94c0e 100644 --- a/src/main/java/caosdb/server/database/access/InfoAccess.java +++ b/src/main/java/org/caosdb/server/database/access/InfoAccess.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.access; +package org.caosdb.server.database.access; -import caosdb.server.utils.Info; import java.sql.SQLException; +import org.caosdb.server.utils.Info; public class InfoAccess extends AbstractAccess<Info> { diff --git a/src/main/java/caosdb/server/database/access/InitAccess.java b/src/main/java/org/caosdb/server/database/access/InitAccess.java similarity index 92% rename from src/main/java/caosdb/server/database/access/InitAccess.java rename to src/main/java/org/caosdb/server/database/access/InitAccess.java index b5b24d835f34ceaeb7b042b3e813859b71807133..1a6108cc62d4dd421d40128a5346ee2d216f6b9c 100644 --- a/src/main/java/caosdb/server/database/access/InitAccess.java +++ b/src/main/java/org/caosdb/server/database/access/InitAccess.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.access; +package org.caosdb.server.database.access; -import caosdb.server.utils.Initialization; import java.sql.SQLException; +import org.caosdb.server.utils.Initialization; public class InitAccess extends AbstractAccess<Initialization> { diff --git a/src/main/java/caosdb/server/database/access/TransactionAccess.java b/src/main/java/org/caosdb/server/database/access/TransactionAccess.java similarity index 89% rename from src/main/java/caosdb/server/database/access/TransactionAccess.java rename to src/main/java/org/caosdb/server/database/access/TransactionAccess.java index 84f422afa9e13f532a33439a7eddd9dc02644b24..406d0fb6577f89c6d1c49627802e39a4514f6cfd 100644 --- a/src/main/java/caosdb/server/database/access/TransactionAccess.java +++ b/src/main/java/org/caosdb/server/database/access/TransactionAccess.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.access; +package org.caosdb.server.database.access; -import caosdb.server.transaction.TransactionInterface; -import caosdb.server.utils.Releasable; +import org.caosdb.server.transaction.TransactionInterface; +import org.caosdb.server.utils.Releasable; public class TransactionAccess extends AbstractAccess<TransactionInterface> { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/ConnectionException.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/ConnectionException.java similarity index 94% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/ConnectionException.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/ConnectionException.java index 6e688f9ad5993f352f9de6047ef2a20ec3d8c3c7..f8b0da3580d5bf3d9156f26cbc55434a6f0b5d99 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/ConnectionException.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/ConnectionException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; public class ConnectionException extends Exception { private static final long serialVersionUID = 3581951559636079126L; diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/DatabaseConnectionPool.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/DatabaseConnectionPool.java similarity index 97% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/DatabaseConnectionPool.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/DatabaseConnectionPool.java index fc17dd1066cfa57660d44dbb6a521d3177e5fc72..f77f810a93428a66247b6559e2bef2ac344cd5d9 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/DatabaseConnectionPool.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/DatabaseConnectionPool.java @@ -20,11 +20,8 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import com.google.common.base.Objects; import java.sql.CallableStatement; import java.sql.Connection; @@ -32,6 +29,9 @@ import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.sql.Statement; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import snaq.db.ConnectionPool; diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteEntityProperties.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteEntityProperties.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteEntityProperties.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteEntityProperties.java index 989291a6342dcd5d7319cb3963127587d9cac5f8..28285ae9a2890e6fc6d69b63e620810867035f50 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteEntityProperties.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteEntityProperties.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.DeleteEntityPropertiesImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLIntegrityConstraintViolationException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.DeleteEntityPropertiesImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLDeleteEntityProperties extends MySQLTransaction implements DeleteEntityPropertiesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeletePassword.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeletePassword.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeletePassword.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeletePassword.java index da3c083a8b21e56338436b4156ae8f33eb3bda01..2569226e271b55a1785da7b548eeae93fbd4c262 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeletePassword.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeletePassword.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.DeletePasswordImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLException; import java.sql.SQLIntegrityConstraintViolationException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.DeletePasswordImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLDeletePassword extends MySQLTransaction implements DeletePasswordImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteRole.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteRole.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteRole.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteRole.java index 6e5c278cf0581936285f1346508682b7304b17cb..8fd8d35fda6b99f7d79b245a10ace4ed9521e0ce 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteRole.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteRole.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.DeleteRoleImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.DeleteRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLDeleteRole extends MySQLTransaction implements DeleteRoleImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteSparseEntity.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteSparseEntity.java index 8293754dcacef49b5ef28bdaba38632ed0771700..9f504f3f2690a6415179761b5a647b2a13bb95d0 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteSparseEntity.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.DeleteSparseEntityImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLIntegrityConstraintViolationException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.DeleteSparseEntityImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLDeleteSparseEntity extends MySQLTransaction implements DeleteSparseEntityImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteUser.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteUser.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteUser.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteUser.java index c037b390fcbd116e6cde1dce7bff654e84c9c7e5..88b20e4a0186844cecce2cc2f5fd14423f5bf4c1 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteUser.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLDeleteUser.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.DeleteUserImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.DeleteUserImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLDeleteUser extends MySQLTransaction implements DeleteUserImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetAllNames.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetAllNames.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetAllNames.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetAllNames.java index 060cf9b8a77ad15e430b34f06e2b17737dd27cc2..09cae6886c2daa94d93ab76539a3e1343f5aecbe 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetAllNames.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetAllNames.java @@ -1,15 +1,15 @@ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetAllNamesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetAllNamesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; /** Retrieve name, role and acl of all entities from the MySQL backend. */ public class MySQLGetAllNames extends MySQLTransaction implements GetAllNamesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetChildren.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetChildren.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetChildren.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetChildren.java index b230efae23cdc7769678a09f008c11cc5dd4851b..d63de2d530d0f32bf3d068e7d1351cfb9609ce79 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetChildren.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetChildren.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetChildrenImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetChildrenImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLGetChildren extends MySQLTransaction implements GetChildrenImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetDependentEntities.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetDependentEntities.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetDependentEntities.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetDependentEntities.java index 2ef8208363d7ad2681f8b0690c09f863723f8f2f..7875ced0d89fd11ed14cf668bb9110f643c053c9 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetDependentEntities.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetDependentEntities.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetDependentEntitiesImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetDependentEntitiesImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLGetDependentEntities extends MySQLTransaction implements GetDependentEntitiesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetFileRecordByPath.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetFileRecordByPath.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetFileRecordByPath.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetFileRecordByPath.java index b929c923ba44c50d02fd4afd78645c20748c225c..9b147d289b337f63dd359ce604719d9e00a149be 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetFileRecordByPath.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetFileRecordByPath.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetFileRecordByPathImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetFileRecordByPathImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public class MySQLGetFileRecordByPath extends MySQLTransaction implements GetFileRecordByPathImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetIDByName.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetIDByName.java similarity index 91% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetIDByName.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetIDByName.java index e9797640d98b6e9f2afb2b95ff3ea5103b623070..5a546ae1ae16c606a9b367cce94e1ceddf073239 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetIDByName.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetIDByName.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetIDByNameImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetIDByNameImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLGetIDByName extends MySQLTransaction implements GetIDByNameImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetInfo.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetInfo.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetInfo.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetInfo.java index 5032f1855aab3d68d7b6670fb794d6e9dccc9336..2e7a110c6f42ffe2b489525509d742810119e187 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetInfo.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetInfo.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetInfoImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoInfo; import java.sql.PreparedStatement; import java.sql.ResultSet; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetInfoImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoInfo; public class MySQLGetInfo extends MySQLTransaction implements GetInfoImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetUpdateableChecksums.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetUpdateableChecksums.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetUpdateableChecksums.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetUpdateableChecksums.java index 534c6ad25df267395770db07ababa6dd9004ef04..cf4e0aa7816b7f119f610ad7a602abfbe01432e4 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLGetUpdateableChecksums.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLGetUpdateableChecksums.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetUpdateableChecksumsImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetUpdateableChecksumsImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLGetUpdateableChecksums extends MySQLTransaction implements GetUpdateableChecksumsImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLHelper.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLHelper.java similarity index 94% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLHelper.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLHelper.java index b443c54507e415ed4171fcf0ac99c3da762fb506..2ad36235bd16e1cecde9908d334f643ebc127e54 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLHelper.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLHelper.java @@ -22,13 +22,8 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.misc.DBHelper; -import caosdb.server.transaction.ChecksumUpdater; -import caosdb.server.transaction.TransactionInterface; -import caosdb.server.transaction.WriteTransaction; import java.io.UnsupportedEncodingException; import java.sql.CallableStatement; import java.sql.Connection; @@ -36,6 +31,11 @@ import java.sql.PreparedStatement; import java.sql.SQLException; import java.sql.Statement; import java.util.HashMap; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.misc.DBHelper; +import org.caosdb.server.transaction.ChecksumUpdater; +import org.caosdb.server.transaction.TransactionInterface; +import org.caosdb.server.transaction.WriteTransaction; import org.slf4j.Logger; import org.slf4j.LoggerFactory; diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityDatatype.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityDatatype.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityDatatype.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityDatatype.java index 47671864570c1a041b8b164a0f045fbf70b47987..c4cb7cf98e5da51f98d71b4c5f6fc91e6961892e 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityDatatype.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityDatatype.java @@ -1,12 +1,12 @@ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertEntityDatatypeImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.sql.PreparedStatement; import java.sql.SQLIntegrityConstraintViolationException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertEntityDatatypeImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public class MySQLInsertEntityDatatype extends MySQLTransaction implements InsertEntityDatatypeImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityProperties.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityProperties.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityProperties.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityProperties.java index cbc01eb3572b2b8dad47e54eea3e430ac853ecd1..d4243d7712cc3982221e1e815cdbdaaa4561a205 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityProperties.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertEntityProperties.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; import static java.sql.Types.BIGINT; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.FlatProperty; -import caosdb.server.datatype.AbstractDatatype.Table; import java.sql.PreparedStatement; import java.sql.SQLException; import java.sql.SQLIntegrityConstraintViolationException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.FlatProperty; +import org.caosdb.server.datatype.AbstractDatatype.Table; public class MySQLInsertEntityProperties extends MySQLTransaction implements InsertEntityPropertiesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLinCon.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLinCon.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLinCon.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLinCon.java index e286212c1d2e365ecab24452be53a602e6f2c21e..b8ea787292e375fcda8b99caa4464bfdf32c3fd7 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLinCon.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLinCon.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertLinConImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.LinCon; import java.sql.PreparedStatement; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertLinConImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.LinCon; public class MySQLInsertLinCon extends MySQLTransaction implements InsertLinConImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLogRecord.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLogRecord.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLogRecord.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLogRecord.java index 054d13e575e9d4d45329f8626756934ac2cf50cf..6807808d18fb6ba9ce0a4ed9287ea21612cc2d2c 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLogRecord.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertLogRecord.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertLogRecordImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLException; import java.util.List; import java.util.logging.LogRecord; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertLogRecordImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLInsertLogRecord extends MySQLTransaction implements InsertLogRecordImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertParents.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertParents.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertParents.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertParents.java index 87493cebfc2c6b7043427be2b490d5203f383ec9..a37bf066aa1573e67390f88bfe18bbed0d6dbb3b 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertParents.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertParents.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertParentsImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertParentsImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLInsertParents extends MySQLTransaction implements InsertParentsImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertRole.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertRole.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertRole.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertRole.java index 796270973abeea2d247c6d12e12b7bfdcc41a622..66f5a888dd8aa7f429dbd1698ff8245e3efb021a 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertRole.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertRole.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.accessControl.Role; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertRoleImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLException; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLInsertRole extends MySQLTransaction implements InsertRoleImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertSparseEntity.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertSparseEntity.java index 97cfde68b1b9097152aca3ea68705e6cdfddfaad..1f1f32c69a260d374ea930ba4e1be63e34cf9ca9 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertSparseEntity.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertSparseEntityImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLIntegrityConstraintViolationException; import java.sql.Types; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertSparseEntityImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public class MySQLInsertSparseEntity extends MySQLTransaction implements InsertSparseEntityImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertTransactionHistory.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertTransactionHistory.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertTransactionHistory.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertTransactionHistory.java index f3563ce0881707677d9095b5787f99af9f7813d9..27b0f8a156ae6b5c936772bf03d0d8ed8da4e42e 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLInsertTransactionHistory.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLInsertTransactionHistory.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.InsertTransactionHistoryImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.InsertTransactionHistoryImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLInsertTransactionHistory extends MySQLTransaction implements InsertTransactionHistoryImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLIsSubType.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLIsSubType.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLIsSubType.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLIsSubType.java index 5a9b1a3e8b06d003229b3265c2777d046abcb6ef..bb847de7bf86e6e8a49414a52933a7bb87cf8d60 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLIsSubType.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLIsSubType.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.IsSubTypeImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.IsSubTypeImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLIsSubType extends MySQLTransaction implements IsSubTypeImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRegisterSubDomain.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRegisterSubDomain.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRegisterSubDomain.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRegisterSubDomain.java index 055177a879d5ebad2e63cc3b77d56864c7bda437..ca4997281c76ec18e54dd1c165ca082eee5e0893 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRegisterSubDomain.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRegisterSubDomain.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RegisterSubDomainImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.ArrayDeque; import java.util.Deque; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RegisterSubDomainImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLRegisterSubDomain extends MySQLTransaction implements RegisterSubDomainImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAll.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAll.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAll.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAll.java index 7ae921315f55e94994a2868d5b0a9b8d8406542b..ec0c0c1b0a067d529ecb72309d7fe83a8b37f819 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAll.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAll.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveAllImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Role; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveAllImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Role; public class MySQLRetrieveAll extends MySQLTransaction implements RetrieveAllImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAllUncheckedFiles.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAllUncheckedFiles.java similarity index 91% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAllUncheckedFiles.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAllUncheckedFiles.java index 0e557da58074729b9c3635453dd4b84b657599bb..09a4e7c2edabea49617224fdb9159116f2cd742b 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAllUncheckedFiles.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveAllUncheckedFiles.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveAllUncheckedFilesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.Iterator; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveAllUncheckedFilesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public class MySQLRetrieveAllUncheckedFiles extends MySQLTransaction implements RetrieveAllUncheckedFilesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveDatatypes.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveDatatypes.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveDatatypes.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveDatatypes.java index a8e12672cf21592c23d8cea0aa22629b4b68855c..e085f0510a5c0a95f1e0a3bc2f702b4e345d706e 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveDatatypes.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveDatatypes.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveDatatypesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VerySparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.ArrayList; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveDatatypesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VerySparseEntity; public class MySQLRetrieveDatatypes extends MySQLTransaction implements RetrieveDatatypesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveLogRecord.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveLogRecord.java similarity index 93% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveLogRecord.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveLogRecord.java index b675b967dda169ad57c8e721dbb82d10eb0563d4..bba36d2eb9de29fee40f023b9b97602d5b94b8a3 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveLogRecord.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveLogRecord.java @@ -20,11 +20,8 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveLogRecordImpl; -import caosdb.server.database.exceptions.TransactionException; import java.io.ByteArrayInputStream; import java.io.IOException; import java.io.ObjectInputStream; @@ -35,6 +32,9 @@ import java.util.LinkedList; import java.util.List; import java.util.logging.Level; import java.util.logging.LogRecord; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveLogRecordImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLRetrieveLogRecord extends MySQLTransaction implements RetrieveLogRecordImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveParents.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveParents.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveParents.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveParents.java index 721ba566ed389732456342aab78691c171b33922..7b8c0d48db3c84183c16b449822065e0c8d798b9 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveParents.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveParents.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveParentsImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VerySparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.sql.Types; import java.util.ArrayList; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveParentsImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VerySparseEntity; public class MySQLRetrieveParents extends MySQLTransaction implements RetrieveParentsImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePasswordValidator.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePasswordValidator.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePasswordValidator.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePasswordValidator.java index 9b951cba69f9b637e333bfb93f3459fc9a0366a4..1ff7dd7afd0b468a90d9e3b82faca1adc5cae84f 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePasswordValidator.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePasswordValidator.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.accessControl.CredentialsValidator; -import caosdb.server.accessControl.HashPasswordValidator; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; -import caosdb.server.database.exceptions.TransactionException; import java.security.NoSuchAlgorithmException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; +import org.caosdb.server.accessControl.CredentialsValidator; +import org.caosdb.server.accessControl.HashPasswordValidator; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLRetrievePasswordValidator extends MySQLTransaction implements RetrievePasswordValidatorImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePermissionRules.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePermissionRules.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePermissionRules.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePermissionRules.java index 7428157e45156e18e0ce1819f731dd4729faee99..40767db34c2ba318637c87ebc7b21ba278c2c574 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePermissionRules.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrievePermissionRules.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.permissions.PermissionRule; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.HashSet; import java.util.Map; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.permissions.PermissionRule; import org.eclipse.jetty.util.ajax.JSON; public class MySQLRetrievePermissionRules extends MySQLTransaction diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveProperties.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveProperties.java similarity index 91% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveProperties.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveProperties.java index 9b6704c4cb3e6395c5b8239a3aefc34bb818e937..39de8692a48fb57b9ad22d0054bcd5bc3541e632 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveProperties.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveProperties.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; - -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrievePropertiesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.FlatProperty; -import caosdb.server.database.proto.ProtoProperty; +package org.caosdb.server.database.backend.implementation.MySQL; + import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.sql.Types; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrievePropertiesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.FlatProperty; +import org.caosdb.server.database.proto.ProtoProperty; public class MySQLRetrieveProperties extends MySQLTransaction implements RetrievePropertiesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveQueryTemplateDefinition.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveQueryTemplateDefinition.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveQueryTemplateDefinition.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveQueryTemplateDefinition.java index c6d88ec9f8fca1651318456161ed2c0347a47f21..fd0efb8e8756cfb7bec596382356e1ea951ad484 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveQueryTemplateDefinition.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveQueryTemplateDefinition.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveQueryTemplateDefinitionImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.sql.Types; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveQueryTemplateDefinitionImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLRetrieveQueryTemplateDefinition extends MySQLTransaction implements RetrieveQueryTemplateDefinitionImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveRole.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveRole.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveRole.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveRole.java index 04cad3e9ad677e4e1d473ead7af06858b0e2a429..f0219040c47bc09fe2052d8e95a3ea83637e6aae 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveRole.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveRole.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.accessControl.Role; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveRoleImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLRetrieveRole extends MySQLTransaction implements RetrieveRoleImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveSparseEntity.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveSparseEntity.java index 097961974b0c599480e8186f170665838e7d046e..3775c1dd4f0b87eb36f43084776d58c0f14f5f80 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveSparseEntity.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveSparseEntityImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.sql.Types; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveSparseEntityImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; /** * Retrieve a single SparseEntity by id. diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveTransactionHistory.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveTransactionHistory.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveTransactionHistory.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveTransactionHistory.java index 43785187d6293c601f1d5b49ac12a7980df218da..3273f49aa85776c4fd323ed4c027f4d1fcd3fbb0 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveTransactionHistory.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveTransactionHistory.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveTransactionHistoryImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoTransactionLogMessage; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.ArrayList; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveTransactionHistoryImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoTransactionLogMessage; public class MySQLRetrieveTransactionHistory extends MySQLTransaction implements RetrieveTransactionHistoryImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveUser.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveUser.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveUser.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveUser.java index 97ef5084da95ccd56d760ae4e04aacab60c97665..bde1878db5d49b2da201b7d589c1ee8b8d73f656 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveUser.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveUser.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.UserStatus; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveUserImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoUser; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.HashSet; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.UserStatus; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveUserImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoUser; public class MySQLRetrieveUser extends MySQLTransaction implements RetrieveUserImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveVersionHistory.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveVersionHistory.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveVersionHistory.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveVersionHistory.java index 22ac0c2e30c0f48fbc884f40593bac2dc45d7b7d..a3c87ae6e97d3b26a99126b61d1d29db1ef6206a 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveVersionHistory.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRetrieveVersionHistory.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrieveVersionHistoryImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VersionHistoryItem; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.HashMap; import java.util.LinkedList; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrieveVersionHistoryImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VersionHistoryItem; /** * Transaction to retrieve all versions of an entity. diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRuleLoader.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRuleLoader.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRuleLoader.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRuleLoader.java index a240a7dec99e881c73912e638bc13314c10b68af..525c3973e5267d336727e723a383aff575dd8493 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLRuleLoader.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLRuleLoader.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RuleLoaderImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.Rule; -import caosdb.server.jobs.core.Mode; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.util.ArrayList; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RuleLoaderImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.Rule; +import org.caosdb.server.jobs.core.Mode; public class MySQLRuleLoader extends MySQLTransaction implements RuleLoaderImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetFileCheckedTimestampImpl.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetFileCheckedTimestampImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetFileCheckedTimestampImpl.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetFileCheckedTimestampImpl.java index 14214077dfb3fb6ae3e5d589e15e17929810cd3e..fa4c60ad1a688fa13ee8e1f82ee6a8a1649d6d4f 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetFileCheckedTimestampImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetFileCheckedTimestampImpl.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.SetFileCheckedTimestampImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.SetFileCheckedTimestampImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLSetFileCheckedTimestampImpl extends MySQLTransaction implements SetFileCheckedTimestampImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetPassword.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetPassword.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetPassword.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetPassword.java index cacbdb4dc7d88338691f3f70890a1caeb677d246..9972c3af019f092087158a9f85659af9cdd2b6dc 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetPassword.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetPassword.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.SetPasswordImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.Utils; import java.math.BigInteger; import java.security.MessageDigest; import java.security.NoSuchAlgorithmException; import java.security.SecureRandom; import java.sql.PreparedStatement; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.SetPasswordImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.Utils; public class MySQLSetPassword extends MySQLTransaction implements SetPasswordImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetPermissionRules.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetPermissionRules.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetPermissionRules.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetPermissionRules.java index c4691e8a01540b7f0557a1c219970d411aa87cae..1569cd494c44eed6ebc083b8e5046ea6649f7ad1 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetPermissionRules.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetPermissionRules.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.SetPermissionRulesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.permissions.PermissionRule; import java.sql.PreparedStatement; import java.sql.SQLException; import java.util.HashSet; import java.util.Map; import java.util.Set; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.SetPermissionRulesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.permissions.PermissionRule; import org.eclipse.jetty.util.ajax.JSON; public class MySQLSetPermissionRules extends MySQLTransaction implements SetPermissionRulesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetQueryTemplateDefinition.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetQueryTemplateDefinition.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetQueryTemplateDefinition.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetQueryTemplateDefinition.java index 29f87a3f399209f440b88bb04d545816fc0958b2..e938010ca56f85d7ad574e51d1b8ef7d88b6c5ad 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSetQueryTemplateDefinition.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSetQueryTemplateDefinition.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.SetQueryTemplateDefinitionImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.SetQueryTemplateDefinitionImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLSetQueryTemplateDefinition extends MySQLTransaction implements SetQueryTemplateDefinitionImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSyncStats.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSyncStats.java similarity index 94% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSyncStats.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSyncStats.java index 4cae9e41560cfddf05c1d7e015e38b7af419a55f..c874f21b14e15889cb0345303318ecf3504b7c05 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLSyncStats.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLSyncStats.java @@ -20,12 +20,8 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.SyncStatsImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.ServerStat; import java.io.ByteArrayInputStream; import java.io.ByteArrayOutputStream; import java.io.IOException; @@ -36,6 +32,10 @@ import java.io.ObjectOutputStream; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.SyncStatsImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.ServerStat; public class MySQLSyncStats extends MySQLTransaction implements SyncStatsImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLTransaction.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLTransaction.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLTransaction.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLTransaction.java index f116a136c1b3e1942ddc2400139db3c82210fac8..5b46579efeac34078fa176f03eb94206dc72f0e0 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLTransaction.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLTransaction.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.BackendTransactionImpl; -import caosdb.server.database.misc.DBHelper; -import caosdb.server.database.misc.TransactionBenchmark; import java.sql.PreparedStatement; import java.sql.SQLException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.BackendTransactionImpl; +import org.caosdb.server.database.misc.DBHelper; +import org.caosdb.server.database.misc.TransactionBenchmark; public class MySQLTransaction implements BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateSparseEntity.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateSparseEntity.java index 73c589fade317586cc1b5bfb4b796578f9e819ba..18b59ef9121bd2f488efcb657a3bf158b6e14308 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateSparseEntity.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.UpdateSparseEntityImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.sql.SQLIntegrityConstraintViolationException; import java.sql.Types; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.UpdateSparseEntityImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public class MySQLUpdateSparseEntity extends MySQLTransaction implements UpdateSparseEntityImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUser.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUser.java similarity index 88% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUser.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUser.java index 4d35ac31d0ab9ff5fc42ce6ac7da988e283f9899..bd368698956163a8473ead7507aac0ba2b83d552 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUser.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUser.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.UpdateUserImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoUser; import java.sql.PreparedStatement; import java.sql.SQLException; import java.sql.Types; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.UpdateUserImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoUser; public class MySQLUpdateUser extends MySQLTransaction implements UpdateUserImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUserRoles.java b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUserRoles.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUserRoles.java rename to src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUserRoles.java index 96b759a3a4e986da177a21e218bbad853b5e0ca5..62cb68bf58fc8269cc365fa167929ff79726499b 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUserRoles.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/MySQL/MySQLUpdateUserRoles.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.MySQL; +package org.caosdb.server.database.backend.implementation.MySQL; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.UpdateUserRolesImpl; -import caosdb.server.database.exceptions.TransactionException; import java.sql.PreparedStatement; import java.sql.SQLException; import java.util.HashSet; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.UpdateUserRolesImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class MySQLUpdateUserRoles extends MySQLTransaction implements UpdateUserRolesImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckHash.java b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckHash.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckHash.java rename to src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckHash.java index 84a195b324ff456dde97271c22e3b14c17bf6131..e6b95a9925bbd560b9ccf80cdb6883efc2098f49 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckHash.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckHash.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.UnixFileSystem; +package org.caosdb.server.database.backend.implementation.UnixFileSystem; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.FileCheckHash; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; -import caosdb.server.utils.Hasher; import java.io.File; import java.io.IOException; import java.security.NoSuchAlgorithmException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.FileCheckHash; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.Hasher; public class UnixFileSystemCheckHash extends UnixFileSystemTransaction implements FileCheckHash { diff --git a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckSize.java b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckSize.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckSize.java rename to src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckSize.java index 019b3925efd9ce22da8c945a3adcd4b586aa0d1a..c695ff58ec9ca0b41f7aaa1ce5513a5ec657d9a6 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckSize.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemCheckSize.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.UnixFileSystem; +package org.caosdb.server.database.backend.implementation.UnixFileSystem; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.FileCheckSize; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; import java.io.File; import java.io.IOException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.FileCheckSize; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; public class UnixFileSystemCheckSize extends UnixFileSystemTransaction implements FileCheckSize { diff --git a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileExists.java b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileExists.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileExists.java rename to src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileExists.java index cc163c7faede75fb216be2c99f532568a36b1f22..908d917c1b858eb7d6da77bfe90fae7e4f6c6289 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileExists.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileExists.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.UnixFileSystem; +package org.caosdb.server.database.backend.implementation.UnixFileSystem; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.FileExists; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; import java.io.File; import java.io.IOException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.FileExists; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; public class UnixFileSystemFileExists extends UnixFileSystemTransaction implements FileExists { diff --git a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileWasModifiedAfter.java b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileWasModifiedAfter.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileWasModifiedAfter.java rename to src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileWasModifiedAfter.java index 6b98d37d2911e9853caa5c29e05e4392e433d17d..70c97fecd67af94aa153fa6e0c6b0c8154cc936d 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileWasModifiedAfter.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemFileWasModifiedAfter.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.UnixFileSystem; +package org.caosdb.server.database.backend.implementation.UnixFileSystem; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.FileWasModifiedAfter; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; import java.io.File; import java.io.IOException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.FileWasModifiedAfter; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; public class UnixFileSystemFileWasModifiedAfter extends UnixFileSystemTransaction implements FileWasModifiedAfter { diff --git a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemGetFileIterator.java b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemGetFileIterator.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemGetFileIterator.java rename to src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemGetFileIterator.java index 5bd6cd56fa40dc8696a8471e33381f1ab2584639..89c275dd6d1fdd324f86f6cce6de179f795c7915 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemGetFileIterator.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemGetFileIterator.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.UnixFileSystem; +package org.caosdb.server.database.backend.implementation.UnixFileSystem; -import caosdb.server.FileSystem; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetFileIteratorImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; import java.io.File; import java.util.Arrays; import java.util.Iterator; +import org.caosdb.server.FileSystem; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetFileIteratorImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; public class UnixFileSystemGetFileIterator extends UnixFileSystemTransaction implements GetFileIteratorImpl { diff --git a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemHelper.java b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemHelper.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemHelper.java rename to src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemHelper.java index 5b197f3d4e6268e604aa27447f43a98857a5fec7..260a401fa6609dbfae363023a3ceb8b717bb87c7 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemHelper.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemHelper.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.UnixFileSystem; +package org.caosdb.server.database.backend.implementation.UnixFileSystem; -import caosdb.server.database.misc.DBHelper; -import caosdb.server.transaction.TransactionInterface; +import org.caosdb.server.database.misc.DBHelper; +import org.caosdb.server.transaction.TransactionInterface; public class UnixFileSystemHelper implements DBHelper { diff --git a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemTransaction.java b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemTransaction.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemTransaction.java rename to src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemTransaction.java index 63e87d6a4f968d3d4833111f9ca9875daf18d9cc..ccf137448ee445f86594017ffc28a09d24158bcb 100644 --- a/src/main/java/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemTransaction.java +++ b/src/main/java/org/caosdb/server/database/backend/implementation/UnixFileSystem/UnixFileSystemTransaction.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.database.backend.implementation.UnixFileSystem; +package org.caosdb.server.database.backend.implementation.UnixFileSystem; -import caosdb.server.FileSystem; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.BackendTransactionImpl; -import caosdb.server.database.misc.DBHelper; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.entity.Message; import java.io.File; import java.io.IOException; +import org.caosdb.server.FileSystem; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.BackendTransactionImpl; +import org.caosdb.server.database.misc.DBHelper; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.entity.Message; public abstract class UnixFileSystemTransaction implements BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/BackendTransactionImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/BackendTransactionImpl.java similarity index 90% rename from src/main/java/caosdb/server/database/backend/interfaces/BackendTransactionImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/BackendTransactionImpl.java index d4751f94cda0b0bdea703d5f207527ea756681f3..8a2dbb0cc67776e68cf6dd9a437754f233ae6190 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/BackendTransactionImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/BackendTransactionImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.database.misc.TransactionBenchmark; public interface BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/DeleteEntityPropertiesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteEntityPropertiesImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/DeleteEntityPropertiesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/DeleteEntityPropertiesImpl.java index d53bb92eaa64dfba603430351489d702d5d10d93..93b7023bf10fd1b035b8d8483bc328cfef5aa5c4 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/DeleteEntityPropertiesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteEntityPropertiesImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.Undoable; public interface DeleteEntityPropertiesImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/DeletePasswordImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/DeletePasswordImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/DeletePasswordImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/DeletePasswordImpl.java index 9def6b6326203df923a384ac3b58d89df9eda0d5..32c485a97776b0b24efaf32b8719f85b2a770cab 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/DeletePasswordImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/DeletePasswordImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface DeletePasswordImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/DeleteRoleImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteRoleImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/DeleteRoleImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/DeleteRoleImpl.java index 230b3c04f4b11eefde2a4335c66a5ebcc1242219..0bd6c5c71921961032fa33741c35210ffb455915 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/DeleteRoleImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteRoleImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface DeleteRoleImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/DeleteSparseEntityImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteSparseEntityImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/DeleteSparseEntityImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/DeleteSparseEntityImpl.java index 4c05ac0daabc7a23c2bfa85c9ca115ec85b5b1f9..30ee60609065c0ac02b5b40a143c0643d37b5667 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/DeleteSparseEntityImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteSparseEntityImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.Undoable; public interface DeleteSparseEntityImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/DeleteUserImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteUserImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/DeleteUserImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/DeleteUserImpl.java index 4f717f738845886d0779d47e19003e64ef323461..3ee0a1e4f7cea5ee00810149b2da589217e8dfe7 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/DeleteUserImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/DeleteUserImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface DeleteUserImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/FileCheckHash.java b/src/main/java/org/caosdb/server/database/backend/interfaces/FileCheckHash.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/FileCheckHash.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/FileCheckHash.java index 11bc5cba2dc606ae02b1627b027a6c266fe43f67..edd0718c41d17f045009c1c84f1fe31260ac225f 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/FileCheckHash.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/FileCheckHash.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.Hasher; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.Hasher; public interface FileCheckHash extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/FileCheckSize.java b/src/main/java/org/caosdb/server/database/backend/interfaces/FileCheckSize.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/FileCheckSize.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/FileCheckSize.java index 36baac7422a73068ec9e37cb7636489ce6c4312d..bce3249865e8c9373ee26e59496a568a494b2021 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/FileCheckSize.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/FileCheckSize.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface FileCheckSize extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/FileExists.java b/src/main/java/org/caosdb/server/database/backend/interfaces/FileExists.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/FileExists.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/FileExists.java index 546b6a9decef489b128813dd944f3c7aa66dc281..9a5ab664547113477a1f3ae0175d7a6f37311d10 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/FileExists.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/FileExists.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface FileExists extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/FileWasModifiedAfter.java b/src/main/java/org/caosdb/server/database/backend/interfaces/FileWasModifiedAfter.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/FileWasModifiedAfter.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/FileWasModifiedAfter.java index 318a15a48c29f8e479ddb192ec24a7750ca1dbcd..08fccc584e1ae653b478abf22a34d4b57b6c4c89 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/FileWasModifiedAfter.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/FileWasModifiedAfter.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface FileWasModifiedAfter extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetAllNamesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetAllNamesImpl.java similarity index 73% rename from src/main/java/caosdb/server/database/backend/interfaces/GetAllNamesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetAllNamesImpl.java index 3a89e579d2713457c72ec2df73e1c1c936d50db2..9ca7a04052eef00c3202fa5b3375b3abe6d7fb54 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetAllNamesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetAllNamesImpl.java @@ -1,7 +1,7 @@ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.proto.SparseEntity; import java.util.List; +import org.caosdb.server.database.proto.SparseEntity; /** * Interface for the retrieval of all known names from the backend. diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetChildrenImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetChildrenImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/GetChildrenImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetChildrenImpl.java index 7f7f7450934787e7abae2ed3b1dbc27b3501e6fd..a58579feb9de5982a09629dfe018e564c4e62b55 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetChildrenImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetChildrenImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; +import org.caosdb.server.database.exceptions.TransactionException; public interface GetChildrenImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetDependentEntitiesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetDependentEntitiesImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/GetDependentEntitiesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetDependentEntitiesImpl.java index 1ed4cf5ffe6ebb5966bd942e6cbd37bacd369f40..ca63fac685ce97f75954b996ba9ee74013ae5b46 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetDependentEntitiesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetDependentEntitiesImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; +import org.caosdb.server.database.exceptions.TransactionException; public interface GetDependentEntitiesImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetFileIteratorImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetFileIteratorImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/GetFileIteratorImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetFileIteratorImpl.java index 5288689936c67648de98de130c8249f92ec1b8f2..0b7e45707d66c945380a6398dea8f5f1a36cc604 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetFileIteratorImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetFileIteratorImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.Iterator; +import org.caosdb.server.database.exceptions.TransactionException; public interface GetFileIteratorImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetFileRecordByPathImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetFileRecordByPathImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/GetFileRecordByPathImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetFileRecordByPathImpl.java index d0dd185aff415ad8ed156b27e8d22e792b896916..e7f6966709cf34518e37ec42143f1dc8794ed5ff 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetFileRecordByPathImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetFileRecordByPathImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public interface GetFileRecordByPathImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetIDByNameImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetIDByNameImpl.java similarity index 90% rename from src/main/java/caosdb/server/database/backend/interfaces/GetIDByNameImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetIDByNameImpl.java index 23a06a1dd4a4388cf43a83ecf237c23f0f9ed482..d788a3570ebd045549420456814786b5e0b15b42 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetIDByNameImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetIDByNameImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; +import org.caosdb.server.database.exceptions.TransactionException; public interface GetIDByNameImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetInfoImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetInfoImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/GetInfoImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetInfoImpl.java index 5281242461f39f9449a136ae44f5235b8dc167fa..d2bb1326e591d912a0562664ec2d26c0008827f9 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetInfoImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetInfoImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoInfo; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoInfo; public interface GetInfoImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/GetUpdateableChecksumsImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/GetUpdateableChecksumsImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/GetUpdateableChecksumsImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/GetUpdateableChecksumsImpl.java index d7d3b142474f1e1398f9bc109fefad7b62e1c0c2..53aac4905a331a9f1e5fc71708cef9fdfa20efa5 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/GetUpdateableChecksumsImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/GetUpdateableChecksumsImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface GetUpdateableChecksumsImpl extends BackendTransactionImpl { diff --git a/src/main/java/org/caosdb/server/database/backend/interfaces/InsertEntityDatatypeImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertEntityDatatypeImpl.java new file mode 100644 index 0000000000000000000000000000000000000000..6da8d5cf9a7534e58cfbe634ad4594da2b2b466c --- /dev/null +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertEntityDatatypeImpl.java @@ -0,0 +1,8 @@ +package org.caosdb.server.database.backend.interfaces; + +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.utils.Undoable; + +public interface InsertEntityDatatypeImpl extends BackendTransactionImpl, Undoable { + public abstract void execute(SparseEntity entity); +} diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertEntityPropertiesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertEntityPropertiesImpl.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/interfaces/InsertEntityPropertiesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/InsertEntityPropertiesImpl.java index 14c76afaa6cf6372b8b35977b70ce1a18c276464..e45fe9ead23f963c3010577de61be02e7c00042f 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertEntityPropertiesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertEntityPropertiesImpl.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.FlatProperty; -import caosdb.server.datatype.AbstractDatatype.Table; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.FlatProperty; +import org.caosdb.server.datatype.AbstractDatatype.Table; +import org.caosdb.server.utils.Undoable; public interface InsertEntityPropertiesImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertLinConImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertLinConImpl.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/interfaces/InsertLinConImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/InsertLinConImpl.java index 679f682441c0f5647d009874ef596a3df719acba..98ba022ecf7fb061a6d95190bc3b6f1007cf51ac 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertLinConImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertLinConImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.LinCon; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.LinCon; +import org.caosdb.server.utils.Undoable; public interface InsertLinConImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertLogRecordImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertLogRecordImpl.java similarity index 90% rename from src/main/java/caosdb/server/database/backend/interfaces/InsertLogRecordImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/InsertLogRecordImpl.java index 511e0ed4b1ffdb645b45a4db96283e0059b6726f..78bab8e251ff6e151963f1be8caf5e73211cc8e3 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertLogRecordImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertLogRecordImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; import java.util.logging.LogRecord; +import org.caosdb.server.database.exceptions.TransactionException; public interface InsertLogRecordImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertParentsImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertParentsImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/InsertParentsImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/InsertParentsImpl.java index f83aa32e633c113379926ddc5e3c9b6c9e4b7ae5..aa65abe60be758197c761be3d728437c53fefcf3 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertParentsImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertParentsImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.Undoable; public interface InsertParentsImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertRoleImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertRoleImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/InsertRoleImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/InsertRoleImpl.java index 3ee2746cc93f8a47dbca675839360ea5297309e1..ff305cab73f58928774cfdbdba95dbc61dad3077 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertRoleImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertRoleImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.accessControl.Role; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.exceptions.TransactionException; public interface InsertRoleImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertSparseEntityImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertSparseEntityImpl.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/interfaces/InsertSparseEntityImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/InsertSparseEntityImpl.java index 8ad9a9f7ac0608c4e1e51ba4783a985d0e20d985..33f46e97872bcd6a519d6980234b201639aa5e1e 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertSparseEntityImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertSparseEntityImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.utils.Undoable; public interface InsertSparseEntityImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/InsertTransactionHistoryImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertTransactionHistoryImpl.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/interfaces/InsertTransactionHistoryImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/InsertTransactionHistoryImpl.java index 0ccb5d1548670eca923bd0f845f68b00e7ce6df9..a0b7db433ef24c515946e3b4fb1556f2aa2a7c16 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/InsertTransactionHistoryImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/InsertTransactionHistoryImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.Undoable; public interface InsertTransactionHistoryImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/IsSubTypeImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/IsSubTypeImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/IsSubTypeImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/IsSubTypeImpl.java index 7a4f9717d01817aa6e0ae3bde5a9b7df56a923d0..2e61c5fb1331ebd102e1e2034bc0ef6a47dcf5dc 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/IsSubTypeImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/IsSubTypeImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface IsSubTypeImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RegisterSubDomainImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RegisterSubDomainImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/RegisterSubDomainImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RegisterSubDomainImpl.java index d5e0c7d1437376d5096d0b248613fcee304457e0..e9df6f8897b4753a273be9877c8a5fa49b106932 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RegisterSubDomainImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RegisterSubDomainImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.Deque; +import org.caosdb.server.database.exceptions.TransactionException; public interface RegisterSubDomainImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveAllImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveAllImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveAllImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveAllImpl.java index 54f8755e6a96ccac44bb471fecfa41fe0b1a6e9f..0aaa9707136ab1fc3cb498c80e2a1ad33771b746 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveAllImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveAllImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; +import org.caosdb.server.database.exceptions.TransactionException; public interface RetrieveAllImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveAllUncheckedFilesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveAllUncheckedFilesImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveAllUncheckedFilesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveAllUncheckedFilesImpl.java index 5d49a0e4a552e6faad4eeb6c9c9f8eb147b8fa65..031bfbf9a4566a6f5c1f7c017f86dcba81ed07ff 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveAllUncheckedFilesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveAllUncheckedFilesImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.util.Iterator; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public interface RetrieveAllUncheckedFilesImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveDatatypesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveDatatypesImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveDatatypesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveDatatypesImpl.java index aa20a3ce8ad3aa599bf719c433128faf285f12ff..91c68dc56a31fe520d6b29c4b6780afe433f9039 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveDatatypesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveDatatypesImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VerySparseEntity; import java.util.ArrayList; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VerySparseEntity; public interface RetrieveDatatypesImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveLogRecordImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveLogRecordImpl.java similarity index 90% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveLogRecordImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveLogRecordImpl.java index 8fa00a0dc722213d264576b06679ac855484545f..b6646d269123d70a3b6d06a381c7a83792e1b659 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveLogRecordImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveLogRecordImpl.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; import java.util.logging.Level; import java.util.logging.LogRecord; +import org.caosdb.server.database.exceptions.TransactionException; public interface RetrieveLogRecordImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveParentsImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveParentsImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveParentsImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveParentsImpl.java index 9dfb8cf57c260c7fe154c25f095886ca6a3c2698..1948be05dbb69cb0259184bf03413edd6c61dbb1 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveParentsImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveParentsImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VerySparseEntity; import java.util.ArrayList; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VerySparseEntity; public interface RetrieveParentsImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrievePasswordValidatorImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePasswordValidatorImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrievePasswordValidatorImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePasswordValidatorImpl.java index 9eaee5f0fdc80356047aadc9d5ae6787228de6c7..3b3c285181416b484e3d0636828f6ef422f921c3 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrievePasswordValidatorImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePasswordValidatorImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.accessControl.CredentialsValidator; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.accessControl.CredentialsValidator; +import org.caosdb.server.database.exceptions.TransactionException; public interface RetrievePasswordValidatorImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrievePermissionRulesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePermissionRulesImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrievePermissionRulesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePermissionRulesImpl.java index 01d2c20d4fdfece4e1f57281dcaf20ee635642ce..cdbb5eb994cba45762c64244b9a4c1a4b2f40c33 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrievePermissionRulesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePermissionRulesImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.permissions.PermissionRule; import java.util.HashSet; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.permissions.PermissionRule; public interface RetrievePermissionRulesImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrievePropertiesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePropertiesImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrievePropertiesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePropertiesImpl.java index b9a15a526b857b9674432a96733c6f2fd8e5d4ea..54dba75e7b84dcae38d33a8bbd0245288dba65ee 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrievePropertiesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrievePropertiesImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoProperty; import java.util.ArrayList; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoProperty; public interface RetrievePropertiesImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveQueryTemplateDefinitionImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveQueryTemplateDefinitionImpl.java similarity index 94% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveQueryTemplateDefinitionImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveQueryTemplateDefinitionImpl.java index cda336044de4bd0d37a3d67da140c744f2699f32..df144c796b9349699432945c861ac42c44045db0 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveQueryTemplateDefinitionImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveQueryTemplateDefinitionImpl.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; public interface RetrieveQueryTemplateDefinitionImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveRoleImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveRoleImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveRoleImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveRoleImpl.java index 518cac1abb030d4cb0cafbb21f53a88e6e2b94c2..92fde36b07d205b59cbf5000da403d936f03fe35 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveRoleImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveRoleImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.accessControl.Role; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.exceptions.TransactionException; public interface RetrieveRoleImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveSparseEntityImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveSparseEntityImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveSparseEntityImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveSparseEntityImpl.java index 5b6978f8f456bf978c3ca60ae0da479eaf54ed0a..8bb790c98e2c45d788f7f1bd8ede6c7c4a2faa03 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveSparseEntityImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveSparseEntityImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public interface RetrieveSparseEntityImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveTransactionHistoryImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveTransactionHistoryImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveTransactionHistoryImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveTransactionHistoryImpl.java index 217ec61c71f01d6c3ef7f0641b135f9a55900702..b02e4d9347e572941ab31e3a1a371470e1d8ee5c 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveTransactionHistoryImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveTransactionHistoryImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoTransactionLogMessage; import java.util.ArrayList; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoTransactionLogMessage; public interface RetrieveTransactionHistoryImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveUserImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveUserImpl.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveUserImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveUserImpl.java index ffb1f16a7227c845c8b4c51f5dd0e97ac5f33f4e..2ff8286331add6143d76d18562935d795ba85cff 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveUserImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveUserImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoUser; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoUser; public interface RetrieveUserImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveVersionHistoryImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveVersionHistoryImpl.java similarity index 61% rename from src/main/java/caosdb/server/database/backend/interfaces/RetrieveVersionHistoryImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveVersionHistoryImpl.java index 118e783d816ce45d1a43738bf8959e4a94740d3c..50b6e13ca8eeb4b6b404ba3e9deb776111e5011e 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RetrieveVersionHistoryImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RetrieveVersionHistoryImpl.java @@ -1,7 +1,7 @@ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.proto.VersionHistoryItem; import java.util.HashMap; +import org.caosdb.server.database.proto.VersionHistoryItem; public interface RetrieveVersionHistoryImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/RuleLoaderImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/RuleLoaderImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/RuleLoaderImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/RuleLoaderImpl.java index c1e84dd3f97ab9fc1f2b9e477a2df120119c9356..151e3d9d21d02d953cffeec8a55b4e01377fc023 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/RuleLoaderImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/RuleLoaderImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.Rule; import java.util.ArrayList; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.Rule; public interface RuleLoaderImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/SetFileCheckedTimestampImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/SetFileCheckedTimestampImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/SetFileCheckedTimestampImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/SetFileCheckedTimestampImpl.java index eab362764d5fd6fe4392c375a2bb324d26ba895d..a398353978b430bbc655ad78b1cadbfcc91f1d9e 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/SetFileCheckedTimestampImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/SetFileCheckedTimestampImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface SetFileCheckedTimestampImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/SetPasswordImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/SetPasswordImpl.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/interfaces/SetPasswordImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/SetPasswordImpl.java index 6e4c951feb55d27b61f60a699f315d18e2662a3e..e60f578879ae1dde60c257e7b7dadd523319daa1 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/SetPasswordImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/SetPasswordImpl.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.exceptions.TransactionException; public interface SetPasswordImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/SetPermissionRulesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/SetPermissionRulesImpl.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/interfaces/SetPermissionRulesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/SetPermissionRulesImpl.java index 29a28415012b7fee4eb2a1219729e293db6f78cf..89ab9bd13acfc67e8d500b3645ffc1770b183c55 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/SetPermissionRulesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/SetPermissionRulesImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.permissions.PermissionRule; import java.util.Set; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.permissions.PermissionRule; public interface SetPermissionRulesImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/SetQueryTemplateDefinitionImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/SetQueryTemplateDefinitionImpl.java similarity index 94% rename from src/main/java/caosdb/server/database/backend/interfaces/SetQueryTemplateDefinitionImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/SetQueryTemplateDefinitionImpl.java index 4d6695fe5d8fe574c44ad39a1342cf43a2628d33..aee26c5e53117028a9de91911cf9710a4164b6a7 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/SetQueryTemplateDefinitionImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/SetQueryTemplateDefinitionImpl.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; public interface SetQueryTemplateDefinitionImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/SyncStatsImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/SyncStatsImpl.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/interfaces/SyncStatsImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/SyncStatsImpl.java index 6a4d1d39cf607f79295bc3e761fe40912e5f5c31..d5a15f0e88cdc4be6e3b726a559f766e053bda2e 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/SyncStatsImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/SyncStatsImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.ServerStat; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.ServerStat; public interface SyncStatsImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/UpdateSparseEntityImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/UpdateSparseEntityImpl.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/interfaces/UpdateSparseEntityImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/UpdateSparseEntityImpl.java index f35832097bfb2b1738c343fceb51c8b259e10f4a..e7cb2612d1f90c826004fc168b355c1537574e00 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/UpdateSparseEntityImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/UpdateSparseEntityImpl.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.utils.Undoable; public interface UpdateSparseEntityImpl extends BackendTransactionImpl, Undoable { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/UpdateUserImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/UpdateUserImpl.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/interfaces/UpdateUserImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/UpdateUserImpl.java index 5479c13fd1fdf4cb59996816a778494328f03cfa..eb26002c1163295d9dd00c32bd8d092ad26b2b55 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/UpdateUserImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/UpdateUserImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoUser; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoUser; public interface UpdateUserImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/interfaces/UpdateUserRolesImpl.java b/src/main/java/org/caosdb/server/database/backend/interfaces/UpdateUserRolesImpl.java similarity index 90% rename from src/main/java/caosdb/server/database/backend/interfaces/UpdateUserRolesImpl.java rename to src/main/java/org/caosdb/server/database/backend/interfaces/UpdateUserRolesImpl.java index 5d1763b6c74ba8b5ca55b317bf708c1bfd2bbda9..f2abfbe3cb7846f16e21d8f9a719ad708884841c 100644 --- a/src/main/java/caosdb/server/database/backend/interfaces/UpdateUserRolesImpl.java +++ b/src/main/java/org/caosdb/server/database/backend/interfaces/UpdateUserRolesImpl.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.backend.interfaces; +package org.caosdb.server.database.backend.interfaces; -import caosdb.server.database.exceptions.TransactionException; import java.util.HashSet; +import org.caosdb.server.database.exceptions.TransactionException; public interface UpdateUserRolesImpl extends BackendTransactionImpl { diff --git a/src/main/java/caosdb/server/database/backend/transaction/DeleteEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteEntity.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/DeleteEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/DeleteEntity.java index e94d90e6e8430d7aace3fa84ea22f6f458cbc41a..7f3d3435e1d4913d99ea0c9b7b064da85e12ac02 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/DeleteEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteEntity.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.TransactionContainer; public class DeleteEntity extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/DeleteEntityProperties.java b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteEntityProperties.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/transaction/DeleteEntityProperties.java rename to src/main/java/org/caosdb/server/database/backend/transaction/DeleteEntityProperties.java index 984ca5eb853e356814aafb69ebd9860bee4fe8a1..7b02fbf003e49c18bc14a602f7e2f781b495c682 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/DeleteEntityProperties.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteEntityProperties.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import static caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; +import static org.caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.DeleteEntityPropertiesImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.DeleteEntityPropertiesImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.utils.EntityStatus; public class DeleteEntityProperties extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/DeleteFile.java b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteFile.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/DeleteFile.java rename to src/main/java/org/caosdb/server/database/backend/transaction/DeleteFile.java index 82c022bef0f321f5a1be81e5f58207c9d06cd427..254e4e70d27518d676ada2d73d28a750148c8871 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/DeleteFile.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteFile.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.CaosDBException; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; import java.io.IOException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; public class DeleteFile extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/DeletePassword.java b/src/main/java/org/caosdb/server/database/backend/transaction/DeletePassword.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/DeletePassword.java rename to src/main/java/org/caosdb/server/database/backend/transaction/DeletePassword.java index a467ae18367c91f02dd2cccefb4a336fe61c1210..402726a945d606091cd83505c69631f28d3ec455 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/DeletePassword.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/DeletePassword.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.DeletePasswordImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.DeletePasswordImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class DeletePassword extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/DeleteRole.java b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteRole.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/DeleteRole.java rename to src/main/java/org/caosdb/server/database/backend/transaction/DeleteRole.java index 1c80d1b99ccc234b51db93a59b73da508fc35982..eab8f6f3d5a8bf8153d1855de653f840a41bb302 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/DeleteRole.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteRole.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.DeleteRoleImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.DeleteRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class DeleteRole extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/DeleteSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteSparseEntity.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/transaction/DeleteSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/DeleteSparseEntity.java index a2e4de6482d78053ab01c70ea3634c3f8af232a3..55989d219ad738d5a866e0ef6f322368c8fc559b 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/DeleteSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteSparseEntity.java @@ -22,15 +22,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import static caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; +import static org.caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.DeleteSparseEntityImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.DeleteSparseEntityImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.utils.EntityStatus; public class DeleteSparseEntity extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/DeleteUser.java b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteUser.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/transaction/DeleteUser.java rename to src/main/java/org/caosdb/server/database/backend/transaction/DeleteUser.java index 90f2d02e8cbfc2d37aba745cf5601f075ad75e06..13ea87446a8d8e786629ec6d7d9ffd032c0f58d0 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/DeleteUser.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/DeleteUser.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.DeleteUserImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.DeleteUserImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class DeleteUser extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/FileConsistencyCheck.java b/src/main/java/org/caosdb/server/database/backend/transaction/FileConsistencyCheck.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/FileConsistencyCheck.java rename to src/main/java/org/caosdb/server/database/backend/transaction/FileConsistencyCheck.java index 5238ec7494abc15baa42e9b8f9d4f659ccd9af99..5cece246538219266537613aec31da24962e1910 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/FileConsistencyCheck.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/FileConsistencyCheck.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.FileCheckHash; -import caosdb.server.database.backend.interfaces.FileCheckSize; -import caosdb.server.database.backend.interfaces.FileExists; -import caosdb.server.database.backend.interfaces.FileWasModifiedAfter; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.Hasher; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.FileCheckHash; +import org.caosdb.server.database.backend.interfaces.FileCheckSize; +import org.caosdb.server.database.backend.interfaces.FileExists; +import org.caosdb.server.database.backend.interfaces.FileWasModifiedAfter; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.Hasher; public class FileConsistencyCheck extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetAllNames.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetAllNames.java similarity index 61% rename from src/main/java/caosdb/server/database/backend/transaction/GetAllNames.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetAllNames.java index f30ec5b2b33de6ba7341b26f4e94244f6501255c..f45f5104283d7d27771a3e2a9b0a38772d4cccf0 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetAllNames.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetAllNames.java @@ -1,12 +1,12 @@ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.GetAllNamesImpl; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetAllNamesImpl; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; public class GetAllNames extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetChildren.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetChildren.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/GetChildren.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetChildren.java index d476345c2e05cf75d5bcfdf333edf760ff991e3a..32bf8883b9f2662207352c8b80356b95f97d7d76 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetChildren.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetChildren.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.GetChildrenImpl; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetChildrenImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class GetChildren extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetDependentEntities.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetDependentEntities.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/GetDependentEntities.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetDependentEntities.java index e4e6e96f999d5ceb3402d1235de04ae6f32e358b..067a422fd509b0987e0e5c8b69da1ee081c258a0 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetDependentEntities.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetDependentEntities.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.GetDependentEntitiesImpl; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetDependentEntitiesImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class GetDependentEntities extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetFileIterator.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetFileIterator.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/GetFileIterator.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetFileIterator.java index 7e28ff243575f75ea577ec80029507cfa1d49d17..c5db6bef59ddf18c95218f442556b6ee6b27ad8a 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetFileIterator.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetFileIterator.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.GetFileIteratorImpl; -import caosdb.server.database.exceptions.TransactionException; import java.util.Iterator; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetFileIteratorImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class GetFileIterator extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetFileRecordByPath.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetFileRecordByPath.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/GetFileRecordByPath.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetFileRecordByPath.java index 6366bd2884aca38a0d54eca4a926fcc7e8b9cda4..1a7fa8635366cce858c35f54378090ebad72fb8f 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetFileRecordByPath.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetFileRecordByPath.java @@ -22,15 +22,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.backend.interfaces.GetFileRecordByPathImpl; -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetFileRecordByPathImpl; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public class GetFileRecordByPath extends CacheableBackendTransaction<String, SparseEntity> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetIDByName.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetIDByName.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/GetIDByName.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetIDByName.java index 895cd707b57d70693ec6a80396b26bce391027af..b43db0010eeeb3179bb91333d854872f5e8ab18a 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetIDByName.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetIDByName.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.GetIDByNameImpl; -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.exceptions.EntityWasNotUniqueException; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetIDByNameImpl; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.exceptions.EntityWasNotUniqueException; +import org.caosdb.server.database.exceptions.TransactionException; public class GetIDByName extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetInfo.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetInfo.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/transaction/GetInfo.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetInfo.java index dd7cfc5a6dd40e2075ecfe0987536b089aea7ef5..a1662ec03f8f5dc2fe424ba10f26e9ba4803b72c 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetInfo.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetInfo.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.GetInfoImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoInfo; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetInfoImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoInfo; public class GetInfo extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/GetUpdateableChecksums.java b/src/main/java/org/caosdb/server/database/backend/transaction/GetUpdateableChecksums.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/transaction/GetUpdateableChecksums.java rename to src/main/java/org/caosdb/server/database/backend/transaction/GetUpdateableChecksums.java index b70c1918942a4ff376e57c5649ce5436cf7c9140..eade9ea62168710e8928e52d1dc9176e366e0300 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/GetUpdateableChecksums.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/GetUpdateableChecksums.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.GetUpdateableChecksumsImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.GetUpdateableChecksumsImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class GetUpdateableChecksums extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntity.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/transaction/InsertEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertEntity.java index e258504908b44c8054a56315fa26e8dacae8b023..42439aa54e06e2556cb7b814f1c9056afb35f9d7 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntity.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.utils.EntityStatus; public class InsertEntity extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertEntityDatatype.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityDatatype.java similarity index 56% rename from src/main/java/caosdb/server/database/backend/transaction/InsertEntityDatatype.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityDatatype.java index 58aa4d88498e7493466cde844d241336b29e3896..182874d1f1e30ed8f5249e609dbbc42a724d94af 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertEntityDatatype.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityDatatype.java @@ -1,12 +1,12 @@ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import static caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; +import static org.caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertEntityDatatypeImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.entity.EntityInterface; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertEntityDatatypeImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.entity.EntityInterface; public class InsertEntityDatatype extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertEntityProperties.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityProperties.java similarity index 87% rename from src/main/java/caosdb/server/database/backend/transaction/InsertEntityProperties.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityProperties.java index a777d4206c4dc0822a4f27912a3ec708c03edd56..bd5bf63a5eb7b194e119c56293e756ff0c4b6a20 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertEntityProperties.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityProperties.java @@ -20,26 +20,26 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; - -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.FlatProperty; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.AbstractDatatype.Table; -import caosdb.server.datatype.CollectionValue; -import caosdb.server.datatype.IndexedSingleValue; -import caosdb.server.datatype.SingleValue; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Role; -import caosdb.server.entity.StatementStatus; -import caosdb.server.entity.wrapper.Property; +package org.caosdb.server.database.backend.transaction; + import java.util.ArrayList; import java.util.Deque; import java.util.Iterator; import java.util.List; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.FlatProperty; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.AbstractDatatype.Table; +import org.caosdb.server.datatype.CollectionValue; +import org.caosdb.server.datatype.IndexedSingleValue; +import org.caosdb.server.datatype.SingleValue; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.entity.wrapper.Property; public class InsertEntityProperties extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertEntityValue.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityValue.java similarity index 79% rename from src/main/java/caosdb/server/database/backend/transaction/InsertEntityValue.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityValue.java index 56ace8d9d2ff6cac5c611ca43424a3bdd8ecbb54..8ec6b0d1fab731d3d51b3a6793c69293575e6462 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertEntityValue.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertEntityValue.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.FlatProperty; -import caosdb.server.datatype.SingleValue; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.StatementStatus; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertEntityPropertiesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.FlatProperty; +import org.caosdb.server.datatype.SingleValue; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.StatementStatus; public class InsertEntityValue extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertFile.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertFile.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/InsertFile.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertFile.java index fe9b930e7a51391e3379f76b6393081edbcc0583..f92dc62bb131fcfe6af2cf51c1c6abeaee7c4dda 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertFile.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertFile.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.utils.EntityStatus; import java.io.IOException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.EntityStatus; public class InsertFile extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertLinCon.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertLinCon.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/InsertLinCon.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertLinCon.java index 279f9f1f93329e03098401a6fc25fd6e2c2fd386..68555010031cc8f8bfe48afcf2c4d5e310bed3d8 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertLinCon.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertLinCon.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertLinConImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.LinCon; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertLinConImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.LinCon; public class InsertLinCon extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertLogRecord.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertLogRecord.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/InsertLogRecord.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertLogRecord.java index 43a21d481d954d34dba66a2f9b824acfaac2aabd..3ce27add49761737c0a8365410c979665a3f16a9 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertLogRecord.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertLogRecord.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertLogRecordImpl; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; import java.util.logging.LogRecord; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertLogRecordImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class InsertLogRecord extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertParents.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertParents.java similarity index 81% rename from src/main/java/caosdb/server/database/backend/transaction/InsertParents.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertParents.java index 439b9f58a6b463a6a7bfe731b54b6690ea17ce96..d71fec922477d664c8c8eff98800164b3a691513 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertParents.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertParents.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertParentsImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertParentsImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.utils.EntityStatus; public class InsertParents extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertRole.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertRole.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/transaction/InsertRole.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertRole.java index e44820d24c19b9215a1730e9b4f848f7578598b1..4ffa7d68f6ff8b2e328a22978803941b310c58a7 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertRole.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertRole.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.accessControl.Role; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertRoleImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class InsertRole extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertSparseEntity.java similarity index 76% rename from src/main/java/caosdb/server/database/backend/transaction/InsertSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertSparseEntity.java index c8e20895711e16c40c75c89c9776e8ad55851117..1800168ebd2cd6ef4180e23046f95066597086e5 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertSparseEntity.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import static caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; +import static org.caosdb.server.transaction.Transaction.ERROR_INTEGRITY_VIOLATION; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertSparseEntityImpl; -import caosdb.server.database.exceptions.IntegrityException; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Version; -import caosdb.server.utils.Undoable; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertSparseEntityImpl; +import org.caosdb.server.database.exceptions.IntegrityException; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Version; +import org.caosdb.server.utils.Undoable; public class InsertSparseEntity extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/InsertTransactionHistory.java b/src/main/java/org/caosdb/server/database/backend/transaction/InsertTransactionHistory.java similarity index 81% rename from src/main/java/caosdb/server/database/backend/transaction/InsertTransactionHistory.java rename to src/main/java/org/caosdb/server/database/backend/transaction/InsertTransactionHistory.java index 242eec2969b622a1f66cda5defd1d2b9d5dc5ead..db7393b04f0afe3c15622dfb750cf31d42050521 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/InsertTransactionHistory.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/InsertTransactionHistory.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.datetime.UTCDateTime; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.InsertTransactionHistoryImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.utils.EntityStatus; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.InsertTransactionHistoryImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.utils.EntityStatus; public class InsertTransactionHistory extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/IsSubType.java b/src/main/java/org/caosdb/server/database/backend/transaction/IsSubType.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/transaction/IsSubType.java rename to src/main/java/org/caosdb/server/database/backend/transaction/IsSubType.java index ed91f761cabde5029b376e6a3132fc9dd93537eb..d75fb2c2453613c50915678d81f53f696589afd4 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/IsSubType.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/IsSubType.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.IsSubTypeImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.IsSubTypeImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class IsSubType extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RegisterSubDomain.java b/src/main/java/org/caosdb/server/database/backend/transaction/RegisterSubDomain.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/RegisterSubDomain.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RegisterSubDomain.java index 08b999d0e0c1e36d108c89a0cf9eed513d3290e4..ecae501d40d4e6ed9ae54e44e12d37a7628699fd 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RegisterSubDomain.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RegisterSubDomain.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RegisterSubDomainImpl; -import caosdb.server.database.exceptions.TransactionException; import java.util.Deque; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RegisterSubDomainImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class RegisterSubDomain extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveAll.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveAll.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveAll.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveAll.java index 5820547c853247245b398778fab97bd854a5a126..7b6173ede59720234c58c6ca882e69e4dda9e6b2 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveAll.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveAll.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveAllImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.RetrieveEntity; -import caosdb.server.entity.container.TransactionContainer; import java.util.List; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveAllImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.RetrieveEntity; +import org.caosdb.server.entity.container.TransactionContainer; public class RetrieveAll extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveAllUncheckedFiles.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveAllUncheckedFiles.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveAllUncheckedFiles.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveAllUncheckedFiles.java index b99694243d9b6571c1c96ac4ce3114543380c434..655e47b8312c3a9772ae3e9055bc73494236a0ec 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveAllUncheckedFiles.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveAllUncheckedFiles.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveAllUncheckedFilesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; import java.util.Iterator; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveAllUncheckedFilesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; public class RetrieveAllUncheckedFiles extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveDatatypes.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveDatatypes.java similarity index 76% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveDatatypes.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveDatatypes.java index 44f8427aeb2911c0483be3824a1e3fe831350cb5..56efbdd3864c5997758417ad02a97b663dfce6e5 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveDatatypes.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveDatatypes.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveDatatypesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VerySparseEntity; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.RetrieveEntity; -import caosdb.server.entity.container.Container; import java.util.ArrayList; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveDatatypesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VerySparseEntity; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.RetrieveEntity; +import org.caosdb.server.entity.container.Container; public class RetrieveDatatypes extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveFullEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveFullEntity.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveFullEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveFullEntity.java index ad0d39e94b56904def08a04a8a42a89627a7b4d6..2601367b7312331a981d2b352040962ac3a98a43 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveFullEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveFullEntity.java @@ -22,22 +22,22 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; - -import caosdb.server.database.BackendTransaction; -import caosdb.server.datatype.ReferenceDatatype; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.RetrieveEntity; -import caosdb.server.entity.Role; -import caosdb.server.entity.container.Container; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.query.Query; -import caosdb.server.query.Query.Selection; -import caosdb.server.utils.EntityStatus; +package org.caosdb.server.database.backend.transaction; + import java.util.LinkedList; import java.util.List; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.datatype.ReferenceDatatype; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.RetrieveEntity; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.container.Container; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.query.Query; +import org.caosdb.server.query.Query.Selection; +import org.caosdb.server.utils.EntityStatus; /** * Retrieve the full entity from the backend - with all parents, properties, file properties and so diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveLogRecord.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveLogRecord.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveLogRecord.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveLogRecord.java index 42211d4312af6370c0f0335dd823f6129719dafd..eae8a96589aab3558a1978890c85bdd18bc161dc 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveLogRecord.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveLogRecord.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveLogRecordImpl; -import caosdb.server.database.exceptions.TransactionException; import java.util.List; import java.util.logging.Level; import java.util.logging.LogRecord; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveLogRecordImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class RetrieveLogRecord extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveParents.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveParents.java similarity index 86% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveParents.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveParents.java index d33d5e96d978fe86d6eb965113726eb79bb60d40..b551430a26ed6a254789258aca688521f5a57ae4 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveParents.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveParents.java @@ -22,17 +22,17 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.backend.interfaces.RetrieveParentsImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VerySparseEntity; -import caosdb.server.entity.EntityInterface; import java.util.ArrayList; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.backend.interfaces.RetrieveParentsImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VerySparseEntity; +import org.caosdb.server.entity.EntityInterface; // TODO Problem with the caching. // When an old entity version has a parent which is deleted, the name is diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrievePasswordValidator.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrievePasswordValidator.java similarity index 81% rename from src/main/java/caosdb/server/database/backend/transaction/RetrievePasswordValidator.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrievePasswordValidator.java index 36ce2c946388fdbee1caabe331355e8032684e8f..d8ea908dbfb0a7f4ae83830b050f976ac383aa6f 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrievePasswordValidator.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrievePasswordValidator.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.accessControl.CredentialsValidator; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.accessControl.CredentialsValidator; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class RetrievePasswordValidator extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrievePermissionRules.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrievePermissionRules.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/transaction/RetrievePermissionRules.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrievePermissionRules.java index 7e9925777c21a6d041759cfdade7682b85458566..0ec6756194342341b64f9dc131b7b912f112a1dc 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrievePermissionRules.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrievePermissionRules.java @@ -22,15 +22,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.permissions.PermissionRule; import java.util.HashSet; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.permissions.PermissionRule; public class RetrievePermissionRules extends CacheableBackendTransaction<String, HashSet<PermissionRule>> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveProperties.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveProperties.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveProperties.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveProperties.java index 822f57fd49e54d7517578592acf09100924fe81b..726382f28c59a45a647098c3d227288fa1fabff6 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveProperties.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveProperties.java @@ -22,19 +22,19 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.backend.interfaces.RetrievePropertiesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoProperty; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Role; -import caosdb.server.entity.wrapper.Property; import java.util.ArrayList; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.backend.interfaces.RetrievePropertiesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoProperty; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.wrapper.Property; public class RetrieveProperties extends CacheableBackendTransaction<String, ArrayList<ProtoProperty>> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveQueryTemplateDefinition.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveQueryTemplateDefinition.java similarity index 81% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveQueryTemplateDefinition.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveQueryTemplateDefinition.java index 0c96c72cb0be41aaf368c22009526914994bc8ec..90a8ac27d264731b5d714fdc0ada116795fd0ee2 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveQueryTemplateDefinition.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveQueryTemplateDefinition.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveQueryTemplateDefinitionImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveQueryTemplateDefinitionImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; public class RetrieveQueryTemplateDefinition extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveRole.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveRole.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveRole.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveRole.java index 5bb6150a8640f45997a4a3432ad4ac27196cd15c..1e855663590d85610860fcee246a4f1ed78a31b2 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveRole.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveRole.java @@ -22,14 +22,14 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.accessControl.Role; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveRoleImpl; -import caosdb.server.database.exceptions.TransactionException; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class RetrieveRole extends CacheableBackendTransaction<String, Role> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveSparseEntity.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveSparseEntity.java index 7843f57957d392c4bbf65f01a60d559cff11c6c8..db35c45d52f40e5e6083770878dda4baed61a5a6 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveSparseEntity.java @@ -22,18 +22,18 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.DatabaseUtils; -import caosdb.server.database.backend.interfaces.RetrieveSparseEntityImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.utils.EntityStatus; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.DatabaseUtils; +import org.caosdb.server.database.backend.interfaces.RetrieveSparseEntityImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.utils.EntityStatus; public class RetrieveSparseEntity extends CacheableBackendTransaction<String, SparseEntity> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveTransactionHistory.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveTransactionHistory.java similarity index 79% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveTransactionHistory.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveTransactionHistory.java index 72bc1e5b1ec3a3509cc5cbba23e38b908d4e969f..632ce20cfe71d0e116bbe3987a60c45b11085eec 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveTransactionHistory.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveTransactionHistory.java @@ -22,16 +22,16 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.datetime.UTCDateTime; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveTransactionHistoryImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoTransactionLogMessage; -import caosdb.server.entity.EntityInterface; -import caosdb.server.utils.TransactionLogMessage; import java.util.ArrayList; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveTransactionHistoryImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoTransactionLogMessage; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.utils.TransactionLogMessage; public class RetrieveTransactionHistory extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveUser.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveUser.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveUser.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveUser.java index 9f27152030f5c953ee7bd4ecfff8c83d3cbc8a73..3ffdee13fe2eac0b2078e44ecfdb1f1101fe137a 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveUser.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveUser.java @@ -22,15 +22,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.accessControl.Principal; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveUserImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoUser; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveUserImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoUser; public class RetrieveUser extends CacheableBackendTransaction<Principal, ProtoUser> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveVersionHistory.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveVersionHistory.java similarity index 85% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveVersionHistory.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveVersionHistory.java index 20be2f8fb60ce54877fdb2fd85d27a6944a71d86..6077d6491fda93b96262b48783092578af37f4f8 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveVersionHistory.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveVersionHistory.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.backend.interfaces.RetrieveVersionHistoryImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VersionHistoryItem; -import caosdb.server.entity.EntityInterface; import java.util.Collection; import java.util.HashMap; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrieveVersionHistoryImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VersionHistoryItem; +import org.caosdb.server.entity.EntityInterface; public abstract class RetrieveVersionHistory extends CacheableBackendTransaction<Integer, HashMap<String, VersionHistoryItem>> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RetrieveVersionInfo.java b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveVersionInfo.java similarity index 89% rename from src/main/java/caosdb/server/database/backend/transaction/RetrieveVersionInfo.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RetrieveVersionInfo.java index 1daab0504cafbd05e9e03dff78b2c230a0438ccd..7d9fe5fd7ea42cf3d6aa29a127a7f82f7ec1764c 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RetrieveVersionInfo.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RetrieveVersionInfo.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.datetime.UTCDateTime; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.VersionHistoryItem; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Version; import java.util.HashMap; import java.util.LinkedList; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.VersionHistoryItem; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Version; public class RetrieveVersionInfo extends RetrieveVersionHistory { diff --git a/src/main/java/caosdb/server/database/backend/transaction/RuleLoader.java b/src/main/java/org/caosdb/server/database/backend/transaction/RuleLoader.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/transaction/RuleLoader.java rename to src/main/java/org/caosdb/server/database/backend/transaction/RuleLoader.java index 303029b42179a697c939767e2caf4d490a803a69..2bc6a92a2449a8ba2d42119c0ba743129bcee2ac 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/RuleLoader.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/RuleLoader.java @@ -22,19 +22,19 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.caching.Cache; -import caosdb.server.database.CacheableBackendTransaction; -import caosdb.server.database.backend.interfaces.RuleLoaderImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.Rule; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.jobs.Job; -import caosdb.server.transaction.Transaction; import java.util.ArrayList; import org.apache.commons.jcs.access.behavior.ICacheAccess; +import org.caosdb.server.caching.Cache; +import org.caosdb.server.database.CacheableBackendTransaction; +import org.caosdb.server.database.backend.interfaces.RuleLoaderImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.Rule; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.jobs.Job; +import org.caosdb.server.transaction.Transaction; public class RuleLoader extends CacheableBackendTransaction<String, ArrayList<Rule>> { diff --git a/src/main/java/caosdb/server/database/backend/transaction/SetFileCheckedTimestamp.java b/src/main/java/org/caosdb/server/database/backend/transaction/SetFileCheckedTimestamp.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/SetFileCheckedTimestamp.java rename to src/main/java/org/caosdb/server/database/backend/transaction/SetFileCheckedTimestamp.java index 1dd20a83a2fc27547a67eb6fce0d532ac24f442c..f7bf76c3d1cdcde7e712dd6d1ebe022c7300bea8 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/SetFileCheckedTimestamp.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/SetFileCheckedTimestamp.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.SetFileCheckedTimestampImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.SetFileCheckedTimestampImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class SetFileCheckedTimestamp extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/SetPassword.java b/src/main/java/org/caosdb/server/database/backend/transaction/SetPassword.java similarity index 84% rename from src/main/java/caosdb/server/database/backend/transaction/SetPassword.java rename to src/main/java/org/caosdb/server/database/backend/transaction/SetPassword.java index 1f6c1e5501cd6d810b85b243fd6c3274c0598feb..a22815ab9ddb09080c34a519454db53c18aeda92 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/SetPassword.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/SetPassword.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.SetPasswordImpl; -import caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.SetPasswordImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class SetPassword extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/SetPermissionRules.java b/src/main/java/org/caosdb/server/database/backend/transaction/SetPermissionRules.java similarity index 82% rename from src/main/java/caosdb/server/database/backend/transaction/SetPermissionRules.java rename to src/main/java/org/caosdb/server/database/backend/transaction/SetPermissionRules.java index a632f299e223d2b46105b81f9b6b784b0cd58204..30986303b11eba2fb63b00d17029b81855277791 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/SetPermissionRules.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/SetPermissionRules.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.SetPermissionRulesImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.permissions.PermissionRule; import java.util.Set; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.SetPermissionRulesImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.permissions.PermissionRule; public class SetPermissionRules extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/SetQueryTemplateDefinition.java b/src/main/java/org/caosdb/server/database/backend/transaction/SetQueryTemplateDefinition.java similarity index 81% rename from src/main/java/caosdb/server/database/backend/transaction/SetQueryTemplateDefinition.java rename to src/main/java/org/caosdb/server/database/backend/transaction/SetQueryTemplateDefinition.java index 10618ff04e8f00c18c60c796e873f7b3ae370d45..b697b04fa2be50c52c7cc565e31a58c3b2a4a3c2 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/SetQueryTemplateDefinition.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/SetQueryTemplateDefinition.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.SetQueryTemplateDefinitionImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.SetQueryTemplateDefinitionImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; public class SetQueryTemplateDefinition extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/SyncStats.java b/src/main/java/org/caosdb/server/database/backend/transaction/SyncStats.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/SyncStats.java rename to src/main/java/org/caosdb/server/database/backend/transaction/SyncStats.java index 8d82c1884d23f7a6bb1af5dafc7d5bb5d8945c56..d2650affcc956b82b8aed76b716221a6d43d5dc8 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/SyncStats.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/SyncStats.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.SyncStatsImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.utils.ServerStat; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.SyncStatsImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.utils.ServerStat; public class SyncStats extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/UpdateEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateEntity.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/UpdateEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/UpdateEntity.java index a7c9ba43f32b1ef97a6a09544041b39a2cd5c71a..9c20cb1d2d112e8d64ce5be2cfa8a7f8da20fe10 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/UpdateEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateEntity.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.utils.EntityStatus; public class UpdateEntity extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/UpdateSparseEntity.java b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateSparseEntity.java similarity index 80% rename from src/main/java/caosdb/server/database/backend/transaction/UpdateSparseEntity.java rename to src/main/java/org/caosdb/server/database/backend/transaction/UpdateSparseEntity.java index 309ff9cbde0131f4b90cc89301a2338a8b92971f..2385ec843a3d499d1184b58eca06f8ae05cbe4f8 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/UpdateSparseEntity.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateSparseEntity.java @@ -22,14 +22,14 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; - -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.UpdateSparseEntityImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Version; +package org.caosdb.server.database.backend.transaction; + +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.UpdateSparseEntityImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Version; public class UpdateSparseEntity extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/UpdateUser.java b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateUser.java similarity index 78% rename from src/main/java/caosdb/server/database/backend/transaction/UpdateUser.java rename to src/main/java/org/caosdb/server/database/backend/transaction/UpdateUser.java index 4f2c2776e936f7f5dd56edcaf2b55c97e8f430bb..07740f88f3fe7f301ffd24ec85a330c8b0afdce7 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/UpdateUser.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateUser.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.UpdateUserImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoUser; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.UpdateUserImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoUser; public class UpdateUser extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/backend/transaction/UpdateUserRoles.java b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateUserRoles.java similarity index 83% rename from src/main/java/caosdb/server/database/backend/transaction/UpdateUserRoles.java rename to src/main/java/org/caosdb/server/database/backend/transaction/UpdateUserRoles.java index 359bbb3a3efa35e37d38b733c204ff8ca2840028..66b3cb8e6f03c3abde0ccaa051a1228057d973f7 100644 --- a/src/main/java/caosdb/server/database/backend/transaction/UpdateUserRoles.java +++ b/src/main/java/org/caosdb/server/database/backend/transaction/UpdateUserRoles.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.UpdateUserRolesImpl; -import caosdb.server.database.exceptions.TransactionException; import java.util.HashSet; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.UpdateUserRolesImpl; +import org.caosdb.server.database.exceptions.TransactionException; public class UpdateUserRoles extends BackendTransaction { diff --git a/src/main/java/caosdb/server/database/exceptions/EntityDoesNotExistException.java b/src/main/java/org/caosdb/server/database/exceptions/EntityDoesNotExistException.java similarity index 95% rename from src/main/java/caosdb/server/database/exceptions/EntityDoesNotExistException.java rename to src/main/java/org/caosdb/server/database/exceptions/EntityDoesNotExistException.java index 29bd175f826fbad3a386b63201561cd50d60921b..ab6e68602f31e1fef37dad7fbcb5059544ec1eb4 100644 --- a/src/main/java/caosdb/server/database/exceptions/EntityDoesNotExistException.java +++ b/src/main/java/org/caosdb/server/database/exceptions/EntityDoesNotExistException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.exceptions; +package org.caosdb.server.database.exceptions; public class EntityDoesNotExistException extends TransactionException { diff --git a/src/main/java/caosdb/server/database/exceptions/EntityWasNotUniqueException.java b/src/main/java/org/caosdb/server/database/exceptions/EntityWasNotUniqueException.java similarity index 95% rename from src/main/java/caosdb/server/database/exceptions/EntityWasNotUniqueException.java rename to src/main/java/org/caosdb/server/database/exceptions/EntityWasNotUniqueException.java index 8a5ab28687b79bfc1a23c8d754b5ca6254155b62..d4aa56e15ebad93aef00ba9faca460d2703211eb 100644 --- a/src/main/java/caosdb/server/database/exceptions/EntityWasNotUniqueException.java +++ b/src/main/java/org/caosdb/server/database/exceptions/EntityWasNotUniqueException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.exceptions; +package org.caosdb.server.database.exceptions; public class EntityWasNotUniqueException extends TransactionException { private static final long serialVersionUID = -6520827199072001991L; diff --git a/src/main/java/caosdb/server/database/exceptions/IntegrityException.java b/src/main/java/org/caosdb/server/database/exceptions/IntegrityException.java similarity index 96% rename from src/main/java/caosdb/server/database/exceptions/IntegrityException.java rename to src/main/java/org/caosdb/server/database/exceptions/IntegrityException.java index e3632fe390ac660d3a7c4354cace0fd2afb61dbd..9bf259a1d8a5d2cd9aaa5e6bc1c475b17049d388 100644 --- a/src/main/java/caosdb/server/database/exceptions/IntegrityException.java +++ b/src/main/java/org/caosdb/server/database/exceptions/IntegrityException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.exceptions; +package org.caosdb.server.database.exceptions; public class IntegrityException extends TransactionException { diff --git a/src/main/java/caosdb/server/database/exceptions/RolledBackException.java b/src/main/java/org/caosdb/server/database/exceptions/RolledBackException.java similarity index 95% rename from src/main/java/caosdb/server/database/exceptions/RolledBackException.java rename to src/main/java/org/caosdb/server/database/exceptions/RolledBackException.java index 0b371d77bb5dc6cb5df057f6ff46f42c0bd879ef..f038da96264e177f89a84d0789f645283afdf46a 100644 --- a/src/main/java/caosdb/server/database/exceptions/RolledBackException.java +++ b/src/main/java/org/caosdb/server/database/exceptions/RolledBackException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.exceptions; +package org.caosdb.server.database.exceptions; public class RolledBackException extends TransactionException { diff --git a/src/main/java/caosdb/server/database/exceptions/TransactionException.java b/src/main/java/org/caosdb/server/database/exceptions/TransactionException.java similarity index 96% rename from src/main/java/caosdb/server/database/exceptions/TransactionException.java rename to src/main/java/org/caosdb/server/database/exceptions/TransactionException.java index 13d306a80fda36ea9310039d2c4fb755c1b7819a..08b68b1a23545aab50ac06ad122e403c1e9e09ec 100644 --- a/src/main/java/caosdb/server/database/exceptions/TransactionException.java +++ b/src/main/java/org/caosdb/server/database/exceptions/TransactionException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.exceptions; +package org.caosdb.server.database.exceptions; public class TransactionException extends RuntimeException { diff --git a/src/main/java/caosdb/server/database/misc/DBHelper.java b/src/main/java/org/caosdb/server/database/misc/DBHelper.java similarity index 91% rename from src/main/java/caosdb/server/database/misc/DBHelper.java rename to src/main/java/org/caosdb/server/database/misc/DBHelper.java index a9b3ea8930cbb874d09ec41e00dbbd2d5fc1d8a0..27bd1d089543d905416a471b6103f9b3be6e3c5b 100644 --- a/src/main/java/caosdb/server/database/misc/DBHelper.java +++ b/src/main/java/org/caosdb/server/database/misc/DBHelper.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.database.misc; +package org.caosdb.server.database.misc; -import caosdb.server.transaction.TransactionInterface; +import org.caosdb.server.transaction.TransactionInterface; public interface DBHelper { diff --git a/src/main/java/caosdb/server/database/misc/RollBackHandler.java b/src/main/java/org/caosdb/server/database/misc/RollBackHandler.java similarity index 88% rename from src/main/java/caosdb/server/database/misc/RollBackHandler.java rename to src/main/java/org/caosdb/server/database/misc/RollBackHandler.java index 38bf00af75d290d9d276beb64a74f03950758734..1591d858aaf9a35ca4851e4627ef6f0b6fc5bb41 100644 --- a/src/main/java/caosdb/server/database/misc/RollBackHandler.java +++ b/src/main/java/org/caosdb/server/database/misc/RollBackHandler.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.misc; +package org.caosdb.server.database.misc; -import caosdb.server.transaction.TransactionInterface; -import caosdb.server.utils.UndoHandler; +import org.caosdb.server.transaction.TransactionInterface; +import org.caosdb.server.utils.UndoHandler; public class RollBackHandler extends UndoHandler implements DBHelper { diff --git a/src/main/java/caosdb/server/database/misc/TransactionBenchmark.java b/src/main/java/org/caosdb/server/database/misc/TransactionBenchmark.java similarity index 98% rename from src/main/java/caosdb/server/database/misc/TransactionBenchmark.java rename to src/main/java/org/caosdb/server/database/misc/TransactionBenchmark.java index 2d263df490a5d54abd35bef1005b2980c66f1bae..aa26924e63aad19f5079aa4e9fa80656f685b5e4 100644 --- a/src/main/java/caosdb/server/database/misc/TransactionBenchmark.java +++ b/src/main/java/org/caosdb/server/database/misc/TransactionBenchmark.java @@ -20,13 +20,8 @@ * * ** end header */ -package caosdb.server.database.misc; +package org.caosdb.server.database.misc; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.utils.CronJob; -import caosdb.server.utils.Info; -import caosdb.server.utils.ServerStat; import java.io.Serializable; import java.util.ArrayList; import java.util.Collection; @@ -38,6 +33,11 @@ import java.util.Map; import java.util.Map.Entry; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.utils.CronJob; +import org.caosdb.server.utils.Info; +import org.caosdb.server.utils.ServerStat; import org.jdom2.Element; class Counter implements Serializable { diff --git a/src/main/java/caosdb/server/database/proto/FlatProperty.java b/src/main/java/org/caosdb/server/database/proto/FlatProperty.java similarity index 96% rename from src/main/java/caosdb/server/database/proto/FlatProperty.java rename to src/main/java/org/caosdb/server/database/proto/FlatProperty.java index a413b461305093671c57acf72a104e631ae81643..9728b378c7d25269519aa645b4e4b2dad982611d 100644 --- a/src/main/java/caosdb/server/database/proto/FlatProperty.java +++ b/src/main/java/org/caosdb/server/database/proto/FlatProperty.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; import java.io.Serializable; diff --git a/src/main/java/caosdb/server/database/proto/LinCon.java b/src/main/java/org/caosdb/server/database/proto/LinCon.java similarity index 97% rename from src/main/java/caosdb/server/database/proto/LinCon.java rename to src/main/java/org/caosdb/server/database/proto/LinCon.java index ba75d3c5a584f9eec6e7525835155bf2ced72ed8..719e760215cd8ec5b45bc30c5b154dca64e3b740 100644 --- a/src/main/java/caosdb/server/database/proto/LinCon.java +++ b/src/main/java/org/caosdb/server/database/proto/LinCon.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; public class LinCon { public final long signature_from; diff --git a/src/main/java/caosdb/server/database/proto/ProtoGroup.java b/src/main/java/org/caosdb/server/database/proto/ProtoGroup.java similarity index 96% rename from src/main/java/caosdb/server/database/proto/ProtoGroup.java rename to src/main/java/org/caosdb/server/database/proto/ProtoGroup.java index 990be2ff4e884ef8981fb10388a094a1a7949b1c..c8e68118dc5ae0f10e0099bdbff202c862451b59 100644 --- a/src/main/java/caosdb/server/database/proto/ProtoGroup.java +++ b/src/main/java/org/caosdb/server/database/proto/ProtoGroup.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; import java.io.Serializable; import java.util.HashSet; diff --git a/src/main/java/caosdb/server/database/proto/ProtoInfo.java b/src/main/java/org/caosdb/server/database/proto/ProtoInfo.java similarity index 96% rename from src/main/java/caosdb/server/database/proto/ProtoInfo.java rename to src/main/java/org/caosdb/server/database/proto/ProtoInfo.java index 36470495680beaa336c86e94598d096b196dc5e3..e8486e2f0ec7e1d92818bea2793f37dc34405da3 100644 --- a/src/main/java/caosdb/server/database/proto/ProtoInfo.java +++ b/src/main/java/org/caosdb/server/database/proto/ProtoInfo.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; public class ProtoInfo { public Integer recordsCount = null; diff --git a/src/main/java/caosdb/server/database/proto/ProtoProperty.java b/src/main/java/org/caosdb/server/database/proto/ProtoProperty.java similarity index 96% rename from src/main/java/caosdb/server/database/proto/ProtoProperty.java rename to src/main/java/org/caosdb/server/database/proto/ProtoProperty.java index 6e13836322e52715d2afdb1d6ecbac946e290212..c19341c75d36b24831c49a11b874176d2fbd108e 100644 --- a/src/main/java/caosdb/server/database/proto/ProtoProperty.java +++ b/src/main/java/org/caosdb/server/database/proto/ProtoProperty.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; import java.io.Serializable; import java.util.List; diff --git a/src/main/java/caosdb/server/database/proto/ProtoTransactionLogMessage.java b/src/main/java/org/caosdb/server/database/proto/ProtoTransactionLogMessage.java similarity index 97% rename from src/main/java/caosdb/server/database/proto/ProtoTransactionLogMessage.java rename to src/main/java/org/caosdb/server/database/proto/ProtoTransactionLogMessage.java index a34d962854852409fd9e14c2125de56ce61326f5..9ca424e2e0eed57dd004141472945956b9ae6c1d 100644 --- a/src/main/java/caosdb/server/database/proto/ProtoTransactionLogMessage.java +++ b/src/main/java/org/caosdb/server/database/proto/ProtoTransactionLogMessage.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; import java.io.Serializable; diff --git a/src/main/java/caosdb/server/database/proto/ProtoUser.java b/src/main/java/org/caosdb/server/database/proto/ProtoUser.java similarity index 93% rename from src/main/java/caosdb/server/database/proto/ProtoUser.java rename to src/main/java/org/caosdb/server/database/proto/ProtoUser.java index 40f8f490dc9e4453525be9e75697df5acc514e97..6cee37e9d47d30a5b032603ef0344fed7b8fdd6f 100644 --- a/src/main/java/caosdb/server/database/proto/ProtoUser.java +++ b/src/main/java/org/caosdb/server/database/proto/ProtoUser.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; -import caosdb.server.accessControl.UserStatus; import java.io.Serializable; import java.util.Set; +import org.caosdb.server.accessControl.UserStatus; public class ProtoUser implements Serializable { diff --git a/src/main/java/caosdb/server/database/proto/Rule.java b/src/main/java/org/caosdb/server/database/proto/Rule.java similarity index 93% rename from src/main/java/caosdb/server/database/proto/Rule.java rename to src/main/java/org/caosdb/server/database/proto/Rule.java index 1bda3f437b54546ff3a5010b44f737a49dac900d..4b710d23d68d03e3b9d6a80e87b192483238fd2e 100644 --- a/src/main/java/caosdb/server/database/proto/Rule.java +++ b/src/main/java/org/caosdb/server/database/proto/Rule.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; -import caosdb.server.jobs.core.Mode; import java.io.Serializable; +import org.caosdb.server.jobs.core.Mode; public class Rule implements Serializable { diff --git a/src/main/java/caosdb/server/database/proto/SparseEntity.java b/src/main/java/org/caosdb/server/database/proto/SparseEntity.java similarity index 97% rename from src/main/java/caosdb/server/database/proto/SparseEntity.java rename to src/main/java/org/caosdb/server/database/proto/SparseEntity.java index d70d4ae026eb72d8c782b763ae3fc21d03a73064..da409f0abad989743a9065ed67bd46d4dd40791a 100644 --- a/src/main/java/caosdb/server/database/proto/SparseEntity.java +++ b/src/main/java/org/caosdb/server/database/proto/SparseEntity.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; /** * Rather abstract representation of a sparse Entity used by the data base abstraction layer. diff --git a/src/main/java/caosdb/server/database/proto/VersionHistoryItem.java b/src/main/java/org/caosdb/server/database/proto/VersionHistoryItem.java similarity index 88% rename from src/main/java/caosdb/server/database/proto/VersionHistoryItem.java rename to src/main/java/org/caosdb/server/database/proto/VersionHistoryItem.java index e671950f39f40c0b93069d031f636ad964560508..be999d998471d07de40e46e4032194cc252f7f99 100644 --- a/src/main/java/caosdb/server/database/proto/VersionHistoryItem.java +++ b/src/main/java/org/caosdb/server/database/proto/VersionHistoryItem.java @@ -1,4 +1,4 @@ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; import java.io.Serializable; import java.util.LinkedList; diff --git a/src/main/java/caosdb/server/database/proto/VerySparseEntity.java b/src/main/java/org/caosdb/server/database/proto/VerySparseEntity.java similarity index 97% rename from src/main/java/caosdb/server/database/proto/VerySparseEntity.java rename to src/main/java/org/caosdb/server/database/proto/VerySparseEntity.java index ae341830f7b2ba20a04d902fd8c7068ce3527260..864cd129398fcbf205a25c50ca345c6f7a349d20 100644 --- a/src/main/java/caosdb/server/database/proto/VerySparseEntity.java +++ b/src/main/java/org/caosdb/server/database/proto/VerySparseEntity.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database.proto; +package org.caosdb.server.database.proto; import java.io.Serializable; diff --git a/src/main/java/caosdb/server/datatype/AbstractCollectionDatatype.java b/src/main/java/org/caosdb/server/datatype/AbstractCollectionDatatype.java similarity index 98% rename from src/main/java/caosdb/server/datatype/AbstractCollectionDatatype.java rename to src/main/java/org/caosdb/server/datatype/AbstractCollectionDatatype.java index 5f07bbe9a2880f5b7fd62fdb66c708e0a2739ab3..cbd822ee10a24127483fae9adff440404a243771 100644 --- a/src/main/java/caosdb/server/datatype/AbstractCollectionDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/AbstractCollectionDatatype.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; import java.util.HashMap; import java.util.regex.Matcher; diff --git a/src/main/java/caosdb/server/datatype/AbstractDatatype.java b/src/main/java/org/caosdb/server/datatype/AbstractDatatype.java similarity index 95% rename from src/main/java/caosdb/server/datatype/AbstractDatatype.java rename to src/main/java/org/caosdb/server/datatype/AbstractDatatype.java index 0cde534aa74a05e33591d5e8d719316e7f1704f6..53ffdb0b45d2ab70db1cb0af5b2c8674ec5deb0b 100644 --- a/src/main/java/caosdb/server/datatype/AbstractDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/AbstractDatatype.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.container.Container; import java.util.HashMap; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.container.Container; import org.reflections.Reflections; public abstract class AbstractDatatype { diff --git a/src/main/java/caosdb/server/datatype/AbstractEnumValue.java b/src/main/java/org/caosdb/server/datatype/AbstractEnumValue.java similarity index 94% rename from src/main/java/caosdb/server/datatype/AbstractEnumValue.java rename to src/main/java/org/caosdb/server/datatype/AbstractEnumValue.java index 33303f22eccbca7fcffafdb9737d4e0880dd98ca..06216c822c705fa6fbaef949386966af15ff6b13 100644 --- a/src/main/java/caosdb/server/datatype/AbstractEnumValue.java +++ b/src/main/java/org/caosdb/server/datatype/AbstractEnumValue.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.datatype.AbstractDatatype.Table; import com.google.common.base.Objects; +import org.caosdb.server.datatype.AbstractDatatype.Table; import org.jdom2.Element; public abstract class AbstractEnumValue implements SingleValue { diff --git a/src/main/java/caosdb/server/datatype/BooleanDatatype.java b/src/main/java/org/caosdb/server/datatype/BooleanDatatype.java similarity index 92% rename from src/main/java/caosdb/server/datatype/BooleanDatatype.java rename to src/main/java/org/caosdb/server/datatype/BooleanDatatype.java index c5ddafb32fac059f49416b0926b9f532e38a3cd3..92c3440aeab6ef1cc86426c4e5d2356aef6720aa 100644 --- a/src/main/java/caosdb/server/datatype/BooleanDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/BooleanDatatype.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; @DatatypeDefinition(name = "Boolean") public class BooleanDatatype extends AbstractDatatype { diff --git a/src/main/java/caosdb/server/datatype/BooleanValue.java b/src/main/java/org/caosdb/server/datatype/BooleanValue.java similarity index 97% rename from src/main/java/caosdb/server/datatype/BooleanValue.java rename to src/main/java/org/caosdb/server/datatype/BooleanValue.java index f06cd4e5516fceeee459909bfde9ce60747834ea..0abfa0c917f21d246854cabcfe437fe48cb3d59e 100644 --- a/src/main/java/caosdb/server/datatype/BooleanValue.java +++ b/src/main/java/org/caosdb/server/datatype/BooleanValue.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; public class BooleanValue extends AbstractEnumValue { diff --git a/src/main/java/caosdb/server/datatype/CaosEnum.java b/src/main/java/org/caosdb/server/datatype/CaosEnum.java similarity index 98% rename from src/main/java/caosdb/server/datatype/CaosEnum.java rename to src/main/java/org/caosdb/server/datatype/CaosEnum.java index 17615b2381c495a3b23b28ad9a2307f1e07bccb7..1040ab9a8114544dfd8a0d5a0a75660be4de5f07 100644 --- a/src/main/java/caosdb/server/datatype/CaosEnum.java +++ b/src/main/java/org/caosdb/server/datatype/CaosEnum.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; import com.google.common.base.Objects; import java.util.TreeSet; diff --git a/src/main/java/caosdb/server/datatype/CollectionDatatypeFactory.java b/src/main/java/org/caosdb/server/datatype/CollectionDatatypeFactory.java similarity index 96% rename from src/main/java/caosdb/server/datatype/CollectionDatatypeFactory.java rename to src/main/java/org/caosdb/server/datatype/CollectionDatatypeFactory.java index 2ecd11549672cf23108d650aaadd61331903c322..1f80d937a8730891ace6a561d32f0a5bd3ce9a56 100644 --- a/src/main/java/caosdb/server/datatype/CollectionDatatypeFactory.java +++ b/src/main/java/org/caosdb/server/datatype/CollectionDatatypeFactory.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; public interface CollectionDatatypeFactory { diff --git a/src/main/java/caosdb/server/datatype/CollectionValue.java b/src/main/java/org/caosdb/server/datatype/CollectionValue.java similarity index 98% rename from src/main/java/caosdb/server/datatype/CollectionValue.java rename to src/main/java/org/caosdb/server/datatype/CollectionValue.java index 3e70de7322af17cf27232446c1e4c984e73ae73a..55cbf0489c3f965e19784c80439d291930d89841 100644 --- a/src/main/java/caosdb/server/datatype/CollectionValue.java +++ b/src/main/java/org/caosdb/server/datatype/CollectionValue.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; import java.util.ArrayList; import java.util.Collections; diff --git a/src/main/java/caosdb/server/datatype/DatatypeDefinition.java b/src/main/java/org/caosdb/server/datatype/DatatypeDefinition.java similarity index 96% rename from src/main/java/caosdb/server/datatype/DatatypeDefinition.java rename to src/main/java/org/caosdb/server/datatype/DatatypeDefinition.java index 3728a57b9c56f474548c882a7a558ad2cbcb6a73..b28ce312d6c5e4252efcdfdd0476d8307b09f021 100644 --- a/src/main/java/caosdb/server/datatype/DatatypeDefinition.java +++ b/src/main/java/org/caosdb/server/datatype/DatatypeDefinition.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; import java.lang.annotation.Retention; import java.lang.annotation.RetentionPolicy; diff --git a/src/main/java/caosdb/server/datatype/DateTimeDatatype.java b/src/main/java/org/caosdb/server/datatype/DateTimeDatatype.java similarity index 84% rename from src/main/java/caosdb/server/datatype/DateTimeDatatype.java rename to src/main/java/org/caosdb/server/datatype/DateTimeDatatype.java index 833a1502d8aecff798cb1c8aa9d0364e7d613ac4..574e40cb96097544a19cf46c4ad700e9ce442208 100644 --- a/src/main/java/caosdb/server/datatype/DateTimeDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/DateTimeDatatype.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.datetime.Date; -import caosdb.datetime.DateTimeFactory2; -import caosdb.datetime.DateTimeInterface; -import caosdb.datetime.UTCDateTime; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; +import org.caosdb.datetime.Date; +import org.caosdb.datetime.DateTimeFactory2; +import org.caosdb.datetime.DateTimeInterface; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; @DatatypeDefinition(name = "DateTime") public class DateTimeDatatype extends AbstractDatatype { diff --git a/src/main/java/caosdb/server/datatype/DoubleDatatype.java b/src/main/java/org/caosdb/server/datatype/DoubleDatatype.java similarity index 92% rename from src/main/java/caosdb/server/datatype/DoubleDatatype.java rename to src/main/java/org/caosdb/server/datatype/DoubleDatatype.java index c7daacdc00bf4895433a3d4c0fc67c025dc6220f..f2f8d2823e4483c59945c168f5e83d029bc6da6a 100644 --- a/src/main/java/caosdb/server/datatype/DoubleDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/DoubleDatatype.java @@ -21,10 +21,10 @@ * ** end header */ // Copyright (c) 2019 Daniel Hornung -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; @DatatypeDefinition(name = "Double") public class DoubleDatatype extends AbstractDatatype { diff --git a/src/main/java/caosdb/server/datatype/FileDatatype.java b/src/main/java/org/caosdb/server/datatype/FileDatatype.java similarity index 96% rename from src/main/java/caosdb/server/datatype/FileDatatype.java rename to src/main/java/org/caosdb/server/datatype/FileDatatype.java index 62c838ca71ada9277944b09862342c46b94bead2..febc317dbd430181784b2312ff6d6162193f4100 100644 --- a/src/main/java/caosdb/server/datatype/FileDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/FileDatatype.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; @DatatypeDefinition(name = "File") public class FileDatatype extends ReferenceDatatype {} diff --git a/src/main/java/caosdb/server/datatype/GenericValue.java b/src/main/java/org/caosdb/server/datatype/GenericValue.java similarity index 96% rename from src/main/java/caosdb/server/datatype/GenericValue.java rename to src/main/java/org/caosdb/server/datatype/GenericValue.java index cffd62bbcbbb2dfffab2a7c55b2b7861b2bd9aae..e21841ee782a2ff86d2d993bbb0b9901a7835667 100644 --- a/src/main/java/caosdb/server/datatype/GenericValue.java +++ b/src/main/java/org/caosdb/server/datatype/GenericValue.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.datatype.AbstractDatatype.Table; import com.google.common.base.Objects; +import org.caosdb.server.datatype.AbstractDatatype.Table; import org.jdom2.Element; public class GenericValue implements SingleValue { diff --git a/src/main/java/caosdb/server/datatype/IndexedSingleValue.java b/src/main/java/org/caosdb/server/datatype/IndexedSingleValue.java similarity index 95% rename from src/main/java/caosdb/server/datatype/IndexedSingleValue.java rename to src/main/java/org/caosdb/server/datatype/IndexedSingleValue.java index f33db43ef0ca8aa50bc9fcca54a232965e98f29a..a9ed584b3ee858e6de2bbb84ad4a43da820cedb0 100644 --- a/src/main/java/caosdb/server/datatype/IndexedSingleValue.java +++ b/src/main/java/org/caosdb/server/datatype/IndexedSingleValue.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.datatype.AbstractDatatype.Table; +import org.caosdb.server.datatype.AbstractDatatype.Table; import org.jdom2.Element; public class IndexedSingleValue implements SingleValue, Comparable<IndexedSingleValue> { diff --git a/src/main/java/caosdb/server/datatype/IntegerDatatype.java b/src/main/java/org/caosdb/server/datatype/IntegerDatatype.java similarity index 91% rename from src/main/java/caosdb/server/datatype/IntegerDatatype.java rename to src/main/java/org/caosdb/server/datatype/IntegerDatatype.java index 4ab8d94dc97d0060335b99f2c91dd05f05e1dc55..b5ac2d971c7edd1eaf3947eacf1d1f94f967d808 100644 --- a/src/main/java/caosdb/server/datatype/IntegerDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/IntegerDatatype.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; @DatatypeDefinition(name = "Integer") public class IntegerDatatype extends AbstractDatatype { diff --git a/src/main/java/caosdb/server/datatype/ListDatatype.java b/src/main/java/org/caosdb/server/datatype/ListDatatype.java similarity index 96% rename from src/main/java/caosdb/server/datatype/ListDatatype.java rename to src/main/java/org/caosdb/server/datatype/ListDatatype.java index 877901458dcf94fee17a9f5ac8c69f1026609322..bdf148e66638757ba5ccc315a7eac557774d8f63 100644 --- a/src/main/java/caosdb/server/datatype/ListDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/ListDatatype.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.Message; +import org.caosdb.server.entity.Message; public class ListDatatype extends AbstractCollectionDatatype { diff --git a/src/main/java/caosdb/server/datatype/ListDatatypeFactory.java b/src/main/java/org/caosdb/server/datatype/ListDatatypeFactory.java similarity index 96% rename from src/main/java/caosdb/server/datatype/ListDatatypeFactory.java rename to src/main/java/org/caosdb/server/datatype/ListDatatypeFactory.java index 9faf9cafba914a67bd474af9f5f7cf66a2456767..d1999f13c794a496657139dfeef78b0584784082 100644 --- a/src/main/java/caosdb/server/datatype/ListDatatypeFactory.java +++ b/src/main/java/org/caosdb/server/datatype/ListDatatypeFactory.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; public class ListDatatypeFactory implements CollectionDatatypeFactory { diff --git a/src/main/java/caosdb/server/datatype/ReferenceDatatype.java b/src/main/java/org/caosdb/server/datatype/ReferenceDatatype.java similarity index 94% rename from src/main/java/caosdb/server/datatype/ReferenceDatatype.java rename to src/main/java/org/caosdb/server/datatype/ReferenceDatatype.java index 1675f028987516ae8e6cadc8aaaa2e6807f35221..42f60cebc116d23137d359c11015a2978233234e 100644 --- a/src/main/java/caosdb/server/datatype/ReferenceDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/ReferenceDatatype.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.Message; +import org.caosdb.server.entity.Message; @DatatypeDefinition(name = "Reference") public class ReferenceDatatype extends AbstractDatatype { diff --git a/src/main/java/caosdb/server/datatype/ReferenceDatatype2.java b/src/main/java/org/caosdb/server/datatype/ReferenceDatatype2.java similarity index 93% rename from src/main/java/caosdb/server/datatype/ReferenceDatatype2.java rename to src/main/java/org/caosdb/server/datatype/ReferenceDatatype2.java index 87c17079b0facdc193ea79dd6005598f7fe151b6..6d96d6deaae43d4d854875424129b7558d0fddf0 100644 --- a/src/main/java/caosdb/server/datatype/ReferenceDatatype2.java +++ b/src/main/java/org/caosdb/server/datatype/ReferenceDatatype2.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; public class ReferenceDatatype2 extends ReferenceDatatype { diff --git a/src/main/java/caosdb/server/datatype/ReferenceValue.java b/src/main/java/org/caosdb/server/datatype/ReferenceValue.java similarity index 96% rename from src/main/java/caosdb/server/datatype/ReferenceValue.java rename to src/main/java/org/caosdb/server/datatype/ReferenceValue.java index 77f7aa8c56d97b8dc5abf914c0b6c88749683d69..89601b50a46cbf838a995a222b0d4c43150f8a19 100644 --- a/src/main/java/caosdb/server/datatype/ReferenceValue.java +++ b/src/main/java/org/caosdb/server/datatype/ReferenceValue.java @@ -22,13 +22,13 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.datatype.AbstractDatatype.Table; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; import java.util.Objects; +import org.caosdb.server.datatype.AbstractDatatype.Table; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; /** diff --git a/src/main/java/caosdb/server/datatype/SQLiteDatatype.java b/src/main/java/org/caosdb/server/datatype/SQLiteDatatype.java similarity index 96% rename from src/main/java/caosdb/server/datatype/SQLiteDatatype.java rename to src/main/java/org/caosdb/server/datatype/SQLiteDatatype.java index 9a7c2f1cbbf7ca508690be9ac414bad56c01770b..ffd4341013176992e802e8e0c8c4bc2d58b78ad3 100644 --- a/src/main/java/caosdb/server/datatype/SQLiteDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/SQLiteDatatype.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; @DatatypeDefinition(name = "SQLite") public class SQLiteDatatype extends ReferenceDatatype {} diff --git a/src/main/java/caosdb/server/datatype/SingleValue.java b/src/main/java/org/caosdb/server/datatype/SingleValue.java similarity index 96% rename from src/main/java/caosdb/server/datatype/SingleValue.java rename to src/main/java/org/caosdb/server/datatype/SingleValue.java index 2ae17a6122035387f31466a74c0468d9fde80e36..cfe2b6404119265c9cccc74349553557467cff56 100644 --- a/src/main/java/caosdb/server/datatype/SingleValue.java +++ b/src/main/java/org/caosdb/server/datatype/SingleValue.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; public interface SingleValue extends Value { diff --git a/src/main/java/caosdb/server/datatype/TextDatatype.java b/src/main/java/org/caosdb/server/datatype/TextDatatype.java similarity index 93% rename from src/main/java/caosdb/server/datatype/TextDatatype.java rename to src/main/java/org/caosdb/server/datatype/TextDatatype.java index f173243f1414bbcf02a0880b3b442eb70823a334..af06ed6de1f0f49b481b2a706f529037e555785e 100644 --- a/src/main/java/caosdb/server/datatype/TextDatatype.java +++ b/src/main/java/org/caosdb/server/datatype/TextDatatype.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; -import caosdb.server.entity.Message; +import org.caosdb.server.entity.Message; @DatatypeDefinition(name = "Text") public class TextDatatype extends AbstractDatatype { diff --git a/src/main/java/caosdb/server/datatype/Value.java b/src/main/java/org/caosdb/server/datatype/Value.java similarity index 96% rename from src/main/java/caosdb/server/datatype/Value.java rename to src/main/java/org/caosdb/server/datatype/Value.java index 6030880dcf6cbcb50a43633c1317c6cae70fef05..540e6bc52b72744c4d7c1c651c40924d1da57c6d 100644 --- a/src/main/java/caosdb/server/datatype/Value.java +++ b/src/main/java/org/caosdb/server/datatype/Value.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/Affiliation.java b/src/main/java/org/caosdb/server/entity/Affiliation.java similarity index 96% rename from src/main/java/caosdb/server/entity/Affiliation.java rename to src/main/java/org/caosdb/server/entity/Affiliation.java index c51a9a279cfe2722d85124b3bde57fe08fd0baf3..f3e5ec73561760b889657ba20134d16aabf3e35a 100644 --- a/src/main/java/caosdb/server/entity/Affiliation.java +++ b/src/main/java/org/caosdb/server/entity/Affiliation.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; public enum Affiliation { INSTANTIATION, // RECORD is-a RECORD TYPE diff --git a/src/main/java/caosdb/server/entity/DeleteEntity.java b/src/main/java/org/caosdb/server/entity/DeleteEntity.java similarity index 97% rename from src/main/java/caosdb/server/entity/DeleteEntity.java rename to src/main/java/org/caosdb/server/entity/DeleteEntity.java index b27ab3a7745a9b4909dac642a9fccbaf035f52f7..37377534f721a3d93455473b7a8a58fb7d50f287 100644 --- a/src/main/java/caosdb/server/entity/DeleteEntity.java +++ b/src/main/java/org/caosdb/server/entity/DeleteEntity.java @@ -22,7 +22,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; public class DeleteEntity extends Entity { diff --git a/src/main/java/caosdb/server/entity/Entity.java b/src/main/java/org/caosdb/server/entity/Entity.java similarity index 95% rename from src/main/java/caosdb/server/entity/Entity.java rename to src/main/java/org/caosdb/server/entity/Entity.java index 16f4f508e2d97a4c0f58c1775e95db9efbf4ffba..28f42308e303c0315b432c017fd2147119c5b346 100644 --- a/src/main/java/caosdb/server/entity/Entity.java +++ b/src/main/java/org/caosdb/server/entity/Entity.java @@ -22,34 +22,8 @@ * * ** end header */ -package caosdb.server.entity; - -import caosdb.datetime.UTCDateTime; -import caosdb.server.CaosDBException; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.database.proto.VerySparseEntity; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.datatype.CollectionValue; -import caosdb.server.datatype.GenericValue; -import caosdb.server.datatype.Value; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.entity.container.ParentContainer; -import caosdb.server.entity.container.PropertyContainer; -import caosdb.server.entity.wrapper.Domain; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.entity.xml.EntityToElementStrategy; -import caosdb.server.entity.xml.SetFieldStrategy; -import caosdb.server.entity.xml.ToElementStrategy; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.permissions.EntityACL; -import caosdb.server.query.Query.Selection; -import caosdb.server.utils.AbstractObservable; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.TransactionLogMessage; -import caosdb.unit.Unit; +package org.caosdb.server.entity; + import java.util.ArrayList; import java.util.HashMap; import java.util.HashSet; @@ -60,6 +34,32 @@ import org.apache.shiro.SecurityUtils; import org.apache.shiro.authz.AuthorizationException; import org.apache.shiro.authz.Permission; import org.apache.shiro.subject.Subject; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.database.proto.VerySparseEntity; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.datatype.CollectionValue; +import org.caosdb.server.datatype.GenericValue; +import org.caosdb.server.datatype.Value; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.entity.container.ParentContainer; +import org.caosdb.server.entity.container.PropertyContainer; +import org.caosdb.server.entity.wrapper.Domain; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.entity.xml.EntityToElementStrategy; +import org.caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.entity.xml.ToElementStrategy; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.permissions.EntityACL; +import org.caosdb.server.query.Query.Selection; +import org.caosdb.server.utils.AbstractObservable; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.TransactionLogMessage; +import org.caosdb.unit.Unit; import org.jdom2.Element; public class Entity extends AbstractObservable implements EntityInterface { diff --git a/src/main/java/caosdb/server/entity/EntityInterface.java b/src/main/java/org/caosdb/server/entity/EntityInterface.java similarity index 86% rename from src/main/java/caosdb/server/entity/EntityInterface.java rename to src/main/java/org/caosdb/server/entity/EntityInterface.java index 4205111a58c30185d916c1d921acb7470d93f7a9..ef97630808536f367869851c5be06d05e6247ac2 100644 --- a/src/main/java/caosdb/server/entity/EntityInterface.java +++ b/src/main/java/org/caosdb/server/entity/EntityInterface.java @@ -20,27 +20,27 @@ * * ** end header */ -package caosdb.server.entity; - -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.database.proto.VerySparseEntity; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.datatype.Value; -import caosdb.server.entity.container.ParentContainer; -import caosdb.server.entity.container.PropertyContainer; -import caosdb.server.entity.wrapper.Domain; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.entity.xml.SetFieldStrategy; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.jobs.JobTarget; -import caosdb.server.permissions.EntityACL; -import caosdb.server.utils.Observable; -import caosdb.server.utils.TransactionLogMessage; -import caosdb.unit.Unit; +package org.caosdb.server.entity; + import java.util.List; import org.apache.shiro.authz.Permission; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.database.proto.VerySparseEntity; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.datatype.Value; +import org.caosdb.server.entity.container.ParentContainer; +import org.caosdb.server.entity.container.PropertyContainer; +import org.caosdb.server.entity.wrapper.Domain; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.jobs.JobTarget; +import org.caosdb.server.permissions.EntityACL; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.TransactionLogMessage; +import org.caosdb.unit.Unit; import org.jdom2.Element; public interface EntityInterface diff --git a/src/main/java/caosdb/server/entity/FileProperties.java b/src/main/java/org/caosdb/server/entity/FileProperties.java similarity index 96% rename from src/main/java/caosdb/server/entity/FileProperties.java rename to src/main/java/org/caosdb/server/entity/FileProperties.java index fbf8031f56566ea5a6df263d97611812bab113d0..b95cfec33ed29d643852fb3a76bb92c1e61d873f 100644 --- a/src/main/java/caosdb/server/entity/FileProperties.java +++ b/src/main/java/org/caosdb/server/entity/FileProperties.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.entity; - -import caosdb.server.CaosDBException; -import caosdb.server.FileSystem; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.UndoHandler; -import caosdb.server.utils.Undoable; +package org.caosdb.server.entity; + import java.io.File; import java.io.IOException; import java.security.NoSuchAlgorithmException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.FileSystem; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.UndoHandler; +import org.caosdb.server.utils.Undoable; public class FileProperties { private File thumbnail = null; diff --git a/src/main/java/caosdb/server/entity/InsertEntity.java b/src/main/java/org/caosdb/server/entity/InsertEntity.java similarity index 96% rename from src/main/java/caosdb/server/entity/InsertEntity.java rename to src/main/java/org/caosdb/server/entity/InsertEntity.java index 92f665e36cb0e0bce0243658e3148dd3b69b9ad4..56eeb12b1c2e7b9d5259a4d418e87c79e8068f51 100644 --- a/src/main/java/caosdb/server/entity/InsertEntity.java +++ b/src/main/java/org/caosdb/server/entity/InsertEntity.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/MagicTypes.java b/src/main/java/org/caosdb/server/entity/MagicTypes.java similarity index 94% rename from src/main/java/caosdb/server/entity/MagicTypes.java rename to src/main/java/org/caosdb/server/entity/MagicTypes.java index ddc57a58362f81c9f3c55a45dc2a069d4202c8af..cffdb0723588d3aaec31e24a39895e304aa2e18b 100644 --- a/src/main/java/caosdb/server/entity/MagicTypes.java +++ b/src/main/java/org/caosdb/server/entity/MagicTypes.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.transaction.Retrieve; import java.util.HashMap; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.transaction.Retrieve; public enum MagicTypes { UNIT, diff --git a/src/main/java/caosdb/server/entity/Message.java b/src/main/java/org/caosdb/server/entity/Message.java similarity index 98% rename from src/main/java/caosdb/server/entity/Message.java rename to src/main/java/org/caosdb/server/entity/Message.java index 0ffedb4316fe372e09f3b69ca5824a72f98accaf..e79c5b6ec7eb314d2dc75ddf6efd795e746bacc9 100644 --- a/src/main/java/caosdb/server/entity/Message.java +++ b/src/main/java/org/caosdb/server/entity/Message.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; -import caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.entity.xml.ToElementable; import org.jdom2.Element; public class Message extends Exception implements Comparable<Message>, ToElementable { diff --git a/src/main/java/caosdb/server/entity/NoSuchRoleException.java b/src/main/java/org/caosdb/server/entity/NoSuchRoleException.java similarity index 96% rename from src/main/java/caosdb/server/entity/NoSuchRoleException.java rename to src/main/java/org/caosdb/server/entity/NoSuchRoleException.java index 783c2752143e7d1099808cf6ef9f19825d1a2836..ae1d2e0da1fc024acbec82c5f89b18e213557fc2 100644 --- a/src/main/java/caosdb/server/entity/NoSuchRoleException.java +++ b/src/main/java/org/caosdb/server/entity/NoSuchRoleException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; public class NoSuchRoleException extends IllegalArgumentException { diff --git a/src/main/java/caosdb/server/entity/RetrieveEntity.java b/src/main/java/org/caosdb/server/entity/RetrieveEntity.java similarity index 97% rename from src/main/java/caosdb/server/entity/RetrieveEntity.java rename to src/main/java/org/caosdb/server/entity/RetrieveEntity.java index 7035232b5a66df77518c8c1b586b7bcb43b7a22b..35e34feda25c3ed7087c3c909a49a5833bce3698 100644 --- a/src/main/java/caosdb/server/entity/RetrieveEntity.java +++ b/src/main/java/org/caosdb/server/entity/RetrieveEntity.java @@ -22,7 +22,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; public class RetrieveEntity extends Entity { diff --git a/src/main/java/caosdb/server/entity/Role.java b/src/main/java/org/caosdb/server/entity/Role.java similarity index 86% rename from src/main/java/caosdb/server/entity/Role.java rename to src/main/java/org/caosdb/server/entity/Role.java index 79b6548f82f41568ec44c574c4ad35502379e58b..0ce45641b5280bca29a0d61b66a9435b9e3297e6 100644 --- a/src/main/java/caosdb/server/entity/Role.java +++ b/src/main/java/org/caosdb/server/entity/Role.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.GetIDByName; -import caosdb.server.entity.xml.EntityToElementStrategy; -import caosdb.server.entity.xml.FileToElementStrategy; -import caosdb.server.entity.xml.ToElementStrategy; import java.util.HashMap; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.GetIDByName; +import org.caosdb.server.entity.xml.EntityToElementStrategy; +import org.caosdb.server.entity.xml.FileToElementStrategy; +import org.caosdb.server.entity.xml.ToElementStrategy; public enum Role { RecordType, diff --git a/src/main/java/caosdb/server/entity/StatementStatus.java b/src/main/java/org/caosdb/server/entity/StatementStatus.java similarity index 96% rename from src/main/java/caosdb/server/entity/StatementStatus.java rename to src/main/java/org/caosdb/server/entity/StatementStatus.java index 122b31fccdf2682a3a1851a650ef116a7184ed49..ec6b0b8ec8cc33fc0fa2c41119e82b2b807aa89f 100644 --- a/src/main/java/caosdb/server/entity/StatementStatus.java +++ b/src/main/java/org/caosdb/server/entity/StatementStatus.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; public enum StatementStatus { OBLIGATORY, diff --git a/src/main/java/caosdb/server/entity/TransactionEntity.java b/src/main/java/org/caosdb/server/entity/TransactionEntity.java similarity index 90% rename from src/main/java/caosdb/server/entity/TransactionEntity.java rename to src/main/java/org/caosdb/server/entity/TransactionEntity.java index 458a1031cf7039c66b3db228813c9a552d6cc53c..2883c076f437520581037219a724020b47893424 100644 --- a/src/main/java/caosdb/server/entity/TransactionEntity.java +++ b/src/main/java/org/caosdb/server/entity/TransactionEntity.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; -import caosdb.server.entity.xml.ToElementStrategy; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.query.Query.Selection; -import caosdb.server.utils.EntityStatus; import java.util.List; import java.util.Map; import java.util.Set; +import org.caosdb.server.entity.xml.ToElementStrategy; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.query.Query.Selection; +import org.caosdb.server.utils.EntityStatus; import org.jdom2.Element; public interface TransactionEntity { diff --git a/src/main/java/caosdb/server/entity/UpdateEntity.java b/src/main/java/org/caosdb/server/entity/UpdateEntity.java similarity index 93% rename from src/main/java/caosdb/server/entity/UpdateEntity.java rename to src/main/java/org/caosdb/server/entity/UpdateEntity.java index 004eefaf5be7564329d9caba19536dbc54ab1f38..aa6d591602df66cc9317351cf6a1ea980bc53ea3 100644 --- a/src/main/java/caosdb/server/entity/UpdateEntity.java +++ b/src/main/java/org/caosdb/server/entity/UpdateEntity.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.EntityStatus; import org.jdom2.Element; public class UpdateEntity extends WritableEntity { diff --git a/src/main/java/caosdb/server/entity/ValidEntity.java b/src/main/java/org/caosdb/server/entity/ValidEntity.java similarity index 96% rename from src/main/java/caosdb/server/entity/ValidEntity.java rename to src/main/java/org/caosdb/server/entity/ValidEntity.java index d2c8b519734f3732f6fc7c43047a99e59ccd71c4..6378e044e65afe4b7340cefd04e0b09153e5ca94 100644 --- a/src/main/java/caosdb/server/entity/ValidEntity.java +++ b/src/main/java/org/caosdb/server/entity/ValidEntity.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; public class ValidEntity extends Entity { diff --git a/src/main/java/caosdb/server/entity/Version.java b/src/main/java/org/caosdb/server/entity/Version.java similarity index 96% rename from src/main/java/caosdb/server/entity/Version.java rename to src/main/java/org/caosdb/server/entity/Version.java index 07c7387e8c419f962e1174504a28ceceda5c30e3..3f9e148583686887fab39038aa427bccf1c69b25 100644 --- a/src/main/java/caosdb/server/entity/Version.java +++ b/src/main/java/org/caosdb/server/entity/Version.java @@ -18,10 +18,10 @@ * along with this program. If not, see <https://www.gnu.org/licenses/>. */ -package caosdb.server.entity; +package org.caosdb.server.entity; -import caosdb.datetime.UTCDateTime; import java.util.LinkedList; +import org.caosdb.datetime.UTCDateTime; /** * Plain old java object (POJO) for an entity's version. diff --git a/src/main/java/caosdb/server/entity/WritableEntity.java b/src/main/java/org/caosdb/server/entity/WritableEntity.java similarity index 96% rename from src/main/java/caosdb/server/entity/WritableEntity.java rename to src/main/java/org/caosdb/server/entity/WritableEntity.java index 6e1c21e27ffbb4ae76a31a6c0cd444c439325cb0..d9dc3edc4fc1fa886370bafb5c40ce0e732b3e4b 100644 --- a/src/main/java/caosdb/server/entity/WritableEntity.java +++ b/src/main/java/org/caosdb/server/entity/WritableEntity.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/WriteEntity.java b/src/main/java/org/caosdb/server/entity/WriteEntity.java similarity index 96% rename from src/main/java/caosdb/server/entity/WriteEntity.java rename to src/main/java/org/caosdb/server/entity/WriteEntity.java index b8c65596a86fdc3553d43f9ea04793c615df3fba..64cbbee8658148e81e09a623c3e235ea18555e5e 100644 --- a/src/main/java/caosdb/server/entity/WriteEntity.java +++ b/src/main/java/org/caosdb/server/entity/WriteEntity.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/container/Container.java b/src/main/java/org/caosdb/server/entity/container/Container.java similarity index 94% rename from src/main/java/caosdb/server/entity/container/Container.java rename to src/main/java/org/caosdb/server/entity/container/Container.java index de20b6a3965fc4fead82612193d061e075d5217d..1f6f14dd172142b5098cb42c949cc780acd1cf67 100644 --- a/src/main/java/caosdb/server/entity/container/Container.java +++ b/src/main/java/org/caosdb/server/entity/container/Container.java @@ -22,10 +22,10 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.EntityInterface; import java.util.ArrayList; +import org.caosdb.server.entity.EntityInterface; public class Container<T extends EntityInterface> extends ArrayList<T> { diff --git a/src/main/java/caosdb/server/entity/container/DeleteContainer.java b/src/main/java/org/caosdb/server/entity/container/DeleteContainer.java similarity index 94% rename from src/main/java/caosdb/server/entity/container/DeleteContainer.java rename to src/main/java/org/caosdb/server/entity/container/DeleteContainer.java index c3d57bc656a7c9609dd8fb6ca4d031e0e82f63fa..0c82642e9f69661c09b6a226880d0921da275a8a 100644 --- a/src/main/java/caosdb/server/entity/container/DeleteContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/DeleteContainer.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.DeleteEntity; import java.util.HashMap; import org.apache.shiro.subject.Subject; +import org.caosdb.server.entity.DeleteEntity; public class DeleteContainer extends EntityByIdContainer { diff --git a/src/main/java/caosdb/server/entity/container/EntityByIdContainer.java b/src/main/java/org/caosdb/server/entity/container/EntityByIdContainer.java similarity index 96% rename from src/main/java/caosdb/server/entity/container/EntityByIdContainer.java rename to src/main/java/org/caosdb/server/entity/container/EntityByIdContainer.java index 29a0978b8acdc809b75c52de643ee131cd62b129..31cc6d41e754db1637ce0752bd219e576d3e6d05 100644 --- a/src/main/java/caosdb/server/entity/container/EntityByIdContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/EntityByIdContainer.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; import java.util.HashMap; import org.apache.shiro.subject.Subject; diff --git a/src/main/java/caosdb/server/entity/container/InsertContainer.java b/src/main/java/org/caosdb/server/entity/container/InsertContainer.java similarity index 93% rename from src/main/java/caosdb/server/entity/container/InsertContainer.java rename to src/main/java/org/caosdb/server/entity/container/InsertContainer.java index 6810e053cc9234bb587ea35f2399e7ceaa04e408..b1b54710581b58c4b2153c5df956f14d4bdd3194 100644 --- a/src/main/java/caosdb/server/entity/container/InsertContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/InsertContainer.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.InsertEntity; import java.util.HashMap; import org.apache.shiro.subject.Subject; +import org.caosdb.server.entity.InsertEntity; import org.jdom2.Element; public class InsertContainer extends WritableContainer { diff --git a/src/main/java/caosdb/server/entity/container/ParentContainer.java b/src/main/java/org/caosdb/server/entity/container/ParentContainer.java similarity index 85% rename from src/main/java/caosdb/server/entity/container/ParentContainer.java rename to src/main/java/org/caosdb/server/entity/container/ParentContainer.java index 461760b8a2d37f293a6bb0756cc79ff757f0dbcf..7e43d7e547187aae0480e6d3eb1851fab4793dc6 100644 --- a/src/main/java/caosdb/server/entity/container/ParentContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/ParentContainer.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.entity.xml.ParentToElementStrategy; -import caosdb.server.entity.xml.SetFieldStrategy; -import caosdb.server.entity.xml.ToElementStrategy; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; -import caosdb.server.utils.Observer; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.entity.xml.ParentToElementStrategy; +import org.caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.entity.xml.ToElementStrategy; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.Observer; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; public class ParentContainer extends Container<Parent> { diff --git a/src/main/java/caosdb/server/entity/container/PropertyContainer.java b/src/main/java/org/caosdb/server/entity/container/PropertyContainer.java similarity index 88% rename from src/main/java/caosdb/server/entity/container/PropertyContainer.java rename to src/main/java/org/caosdb/server/entity/container/PropertyContainer.java index 80cf816156c0d4d81bca1e5b0e0de19c38fcb032..074d231fb41471ee4d94f8cfb98ec598c6a4f643 100644 --- a/src/main/java/caosdb/server/entity/container/PropertyContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/PropertyContainer.java @@ -22,21 +22,21 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.entity.xml.PropertyToElementStrategy; -import caosdb.server.entity.xml.SetFieldStrategy; -import caosdb.server.entity.xml.ToElementStrategy; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; -import caosdb.server.utils.Observer; -import caosdb.server.utils.ServerMessages; import java.util.Collection; import java.util.Collections; import java.util.Comparator; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.entity.xml.PropertyToElementStrategy; +import org.caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.entity.xml.ToElementStrategy; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.Observer; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; public class PropertyContainer extends Container<Property> { diff --git a/src/main/java/caosdb/server/entity/container/RetrieveContainer.java b/src/main/java/org/caosdb/server/entity/container/RetrieveContainer.java similarity index 94% rename from src/main/java/caosdb/server/entity/container/RetrieveContainer.java rename to src/main/java/org/caosdb/server/entity/container/RetrieveContainer.java index 5b205bc27f38e3d1a04b2ed3c5a7e874af229489..681aac89551ea5c8f450db00d29404283f99b4d9 100644 --- a/src/main/java/caosdb/server/entity/container/RetrieveContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/RetrieveContainer.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.RetrieveEntity; import java.util.HashMap; import org.apache.shiro.subject.Subject; +import org.caosdb.server.entity.RetrieveEntity; public class RetrieveContainer extends EntityByIdContainer { diff --git a/src/main/java/caosdb/server/entity/container/TransactionContainer.java b/src/main/java/org/caosdb/server/entity/container/TransactionContainer.java similarity index 92% rename from src/main/java/caosdb/server/entity/container/TransactionContainer.java rename to src/main/java/org/caosdb/server/entity/container/TransactionContainer.java index f3a8a0f395838e6c8f5b2a4d8adf6f5b8627d06c..5d7e79b202b0c4bf4fbc9550a1053a019fd58b01 100644 --- a/src/main/java/caosdb/server/entity/container/TransactionContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/TransactionContainer.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.entity.container; - -import caosdb.server.CaosDBServer; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.jobs.JobTarget; -import caosdb.server.utils.EntityStatus; +package org.caosdb.server.entity.container; + import java.util.HashMap; import java.util.LinkedList; import java.util.List; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.jobs.JobTarget; +import org.caosdb.server.utils.EntityStatus; import org.jdom2.Element; public class TransactionContainer extends Container<EntityInterface> diff --git a/src/main/java/caosdb/server/entity/container/UpdateContainer.java b/src/main/java/org/caosdb/server/entity/container/UpdateContainer.java similarity index 93% rename from src/main/java/caosdb/server/entity/container/UpdateContainer.java rename to src/main/java/org/caosdb/server/entity/container/UpdateContainer.java index 843e70cf8131428cfb4086c6ee0b6f30c32797cf..578e422be12b85137bcf7707662217407abc7e00 100644 --- a/src/main/java/caosdb/server/entity/container/UpdateContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/UpdateContainer.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.UpdateEntity; import java.util.HashMap; import org.apache.shiro.subject.Subject; +import org.caosdb.server.entity.UpdateEntity; import org.jdom2.Element; public class UpdateContainer extends WritableContainer { diff --git a/src/main/java/caosdb/server/entity/container/WritableContainer.java b/src/main/java/org/caosdb/server/entity/container/WritableContainer.java similarity index 94% rename from src/main/java/caosdb/server/entity/container/WritableContainer.java rename to src/main/java/org/caosdb/server/entity/container/WritableContainer.java index 3000aa5a943ec767b5de889899e62ccae311fa8d..1cebca67f33f281f10d8da52c90bf06b47785e5f 100644 --- a/src/main/java/caosdb/server/entity/container/WritableContainer.java +++ b/src/main/java/org/caosdb/server/entity/container/WritableContainer.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; -import caosdb.server.entity.FileProperties; import java.util.HashMap; import org.apache.shiro.subject.Subject; +import org.caosdb.server.entity.FileProperties; import org.jdom2.Element; public abstract class WritableContainer extends TransactionContainer { diff --git a/src/main/java/caosdb/server/entity/wrapper/Domain.java b/src/main/java/org/caosdb/server/entity/wrapper/Domain.java similarity index 78% rename from src/main/java/caosdb/server/entity/wrapper/Domain.java rename to src/main/java/org/caosdb/server/entity/wrapper/Domain.java index 5bd5c73b99579337e1f5ccd0a4e97c0011347b04..146706efd2caa74ff1399568bf499f37683bfdbe 100644 --- a/src/main/java/caosdb/server/entity/wrapper/Domain.java +++ b/src/main/java/org/caosdb/server/entity/wrapper/Domain.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.entity.wrapper; +package org.caosdb.server.entity.wrapper; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.datatype.Value; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Role; -import caosdb.server.entity.container.PropertyContainer; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.datatype.Value; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.container.PropertyContainer; public class Domain extends Entity { @@ -37,7 +37,7 @@ public class Domain extends Entity { final PropertyContainer properties, final AbstractDatatype datatype, final Value value, - final caosdb.server.entity.StatementStatus statementStatus) { + final org.caosdb.server.entity.StatementStatus statementStatus) { setRole(Role.Domain); setProperties(properties); diff --git a/src/main/java/caosdb/server/entity/wrapper/EntityWrapper.java b/src/main/java/org/caosdb/server/entity/wrapper/EntityWrapper.java similarity index 91% rename from src/main/java/caosdb/server/entity/wrapper/EntityWrapper.java rename to src/main/java/org/caosdb/server/entity/wrapper/EntityWrapper.java index f8d563de1776d155b2f66b913de454c7e5b952fd..e042c2326cc43e5d98cc3a27b61c21301bf9e90d 100644 --- a/src/main/java/caosdb/server/entity/wrapper/EntityWrapper.java +++ b/src/main/java/org/caosdb/server/entity/wrapper/EntityWrapper.java @@ -22,34 +22,34 @@ * * ** end header */ -package caosdb.server.entity.wrapper; - -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.database.proto.VerySparseEntity; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.datatype.Value; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.entity.Role; -import caosdb.server.entity.StatementStatus; -import caosdb.server.entity.Version; -import caosdb.server.entity.container.ParentContainer; -import caosdb.server.entity.container.PropertyContainer; -import caosdb.server.entity.xml.SetFieldStrategy; -import caosdb.server.entity.xml.ToElementStrategy; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.permissions.EntityACL; -import caosdb.server.query.Query.Selection; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observer; -import caosdb.server.utils.TransactionLogMessage; -import caosdb.unit.Unit; +package org.caosdb.server.entity.wrapper; + import java.util.List; import java.util.Map; import java.util.Set; import org.apache.shiro.authz.Permission; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.database.proto.VerySparseEntity; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.datatype.Value; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.entity.Version; +import org.caosdb.server.entity.container.ParentContainer; +import org.caosdb.server.entity.container.PropertyContainer; +import org.caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.entity.xml.ToElementStrategy; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.permissions.EntityACL; +import org.caosdb.server.query.Query.Selection; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observer; +import org.caosdb.server.utils.TransactionLogMessage; +import org.caosdb.unit.Unit; import org.jdom2.Element; public class EntityWrapper implements EntityInterface { diff --git a/src/main/java/caosdb/server/entity/wrapper/Parent.java b/src/main/java/org/caosdb/server/entity/wrapper/Parent.java similarity index 87% rename from src/main/java/caosdb/server/entity/wrapper/Parent.java rename to src/main/java/org/caosdb/server/entity/wrapper/Parent.java index f3686b5b802e004e55d572e58076e5e08bb5988d..00336f4a336ed3c7f35408e5996fa7adc936f42a 100644 --- a/src/main/java/caosdb/server/entity/wrapper/Parent.java +++ b/src/main/java/org/caosdb/server/entity/wrapper/Parent.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.entity.wrapper; +package org.caosdb.server.entity.wrapper; -import caosdb.server.entity.Affiliation; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.xml.ParentToElementStrategy; +import org.caosdb.server.entity.Affiliation; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.xml.ParentToElementStrategy; import org.jdom2.Element; public class Parent extends EntityWrapper { diff --git a/src/main/java/caosdb/server/entity/wrapper/Property.java b/src/main/java/org/caosdb/server/entity/wrapper/Property.java similarity index 91% rename from src/main/java/caosdb/server/entity/wrapper/Property.java rename to src/main/java/org/caosdb/server/entity/wrapper/Property.java index 1d1cd2a8ae11489479b9e9191365843182d136ca..305a9d83cbfad835baa547670fae8e186417330d 100644 --- a/src/main/java/caosdb/server/entity/wrapper/Property.java +++ b/src/main/java/org/caosdb/server/entity/wrapper/Property.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.entity.wrapper; +package org.caosdb.server.entity.wrapper; -import caosdb.server.database.proto.FlatProperty; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.GenericValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; import org.apache.shiro.authz.AuthorizationException; import org.apache.shiro.authz.Permission; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.proto.FlatProperty; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.GenericValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; import org.jdom2.Element; public class Property extends EntityWrapper { diff --git a/src/main/java/caosdb/server/entity/xml/DomainToElementStrategy.java b/src/main/java/org/caosdb/server/entity/xml/DomainToElementStrategy.java similarity index 95% rename from src/main/java/caosdb/server/entity/xml/DomainToElementStrategy.java rename to src/main/java/org/caosdb/server/entity/xml/DomainToElementStrategy.java index 099b51044353f3074ece5cef77a7588a658bab81..a8b600793a6fdaf8d15ec499112cc06771f66fc3 100644 --- a/src/main/java/caosdb/server/entity/xml/DomainToElementStrategy.java +++ b/src/main/java/org/caosdb/server/entity/xml/DomainToElementStrategy.java @@ -22,9 +22,9 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.EntityInterface; import org.jdom2.Element; /** diff --git a/src/main/java/caosdb/server/entity/xml/EntityToElementStrategy.java b/src/main/java/org/caosdb/server/entity/xml/EntityToElementStrategy.java similarity index 96% rename from src/main/java/caosdb/server/entity/xml/EntityToElementStrategy.java rename to src/main/java/org/caosdb/server/entity/xml/EntityToElementStrategy.java index 6cfe8fa9f3628cc0670ccb3e6f30a263a0bc5cf3..e6dc2b21d088ceeff9e0e7a9b60547b288893f18 100644 --- a/src/main/java/caosdb/server/entity/xml/EntityToElementStrategy.java +++ b/src/main/java/org/caosdb/server/entity/xml/EntityToElementStrategy.java @@ -22,14 +22,14 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.TransactionLogMessage; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.TransactionLogMessage; import org.jdom2.Attribute; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/xml/FileToElementStrategy.java b/src/main/java/org/caosdb/server/entity/xml/FileToElementStrategy.java similarity index 95% rename from src/main/java/caosdb/server/entity/xml/FileToElementStrategy.java rename to src/main/java/org/caosdb/server/entity/xml/FileToElementStrategy.java index 82fb05218842675aacad177c364e74b3d4082546..7ac394a2e3f226afa6f4723daadc95c63db69b25 100644 --- a/src/main/java/caosdb/server/entity/xml/FileToElementStrategy.java +++ b/src/main/java/org/caosdb/server/entity/xml/FileToElementStrategy.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.EntityInterface; import org.jdom2.Attribute; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/xml/ParentToElementStrategy.java b/src/main/java/org/caosdb/server/entity/xml/ParentToElementStrategy.java similarity index 91% rename from src/main/java/caosdb/server/entity/xml/ParentToElementStrategy.java rename to src/main/java/org/caosdb/server/entity/xml/ParentToElementStrategy.java index 2498e00bfda219eb5e724a7c38bc73cc4ad3468e..29c163dc5ca55b731aa44a85224821c41356e35a 100644 --- a/src/main/java/caosdb/server/entity/xml/ParentToElementStrategy.java +++ b/src/main/java/org/caosdb/server/entity/xml/ParentToElementStrategy.java @@ -22,11 +22,11 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.utils.EntityStatus; import org.jdom2.Element; /** diff --git a/src/main/java/caosdb/server/entity/xml/PropertyToElementStrategy.java b/src/main/java/org/caosdb/server/entity/xml/PropertyToElementStrategy.java similarity index 89% rename from src/main/java/caosdb/server/entity/xml/PropertyToElementStrategy.java rename to src/main/java/org/caosdb/server/entity/xml/PropertyToElementStrategy.java index a88b47cbd411d1b62764a2d6cc130b9ff7d04cae..60014d82b18da4e8dfdd5fe0bcf042171c2bdda7 100644 --- a/src/main/java/caosdb/server/entity/xml/PropertyToElementStrategy.java +++ b/src/main/java/org/caosdb/server/entity/xml/PropertyToElementStrategy.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.datatype.SingleValue; -import caosdb.server.datatype.Value; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.MagicTypes; +import org.caosdb.server.datatype.SingleValue; +import org.caosdb.server.datatype.Value; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.MagicTypes; import org.jdom2.Attribute; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/xml/SetFieldStrategy.java b/src/main/java/org/caosdb/server/entity/xml/SetFieldStrategy.java similarity index 96% rename from src/main/java/caosdb/server/entity/xml/SetFieldStrategy.java rename to src/main/java/org/caosdb/server/entity/xml/SetFieldStrategy.java index 7a4a29a16cc545ca5316c7b086a8b1ec46cfcfc3..1d9f219086e5ddd921d9519d3391e1cca9fbffc9 100644 --- a/src/main/java/caosdb/server/entity/xml/SetFieldStrategy.java +++ b/src/main/java/org/caosdb/server/entity/xml/SetFieldStrategy.java @@ -22,14 +22,14 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.entity.EntityInterface; -import caosdb.server.query.Query; -import caosdb.server.query.Query.Selection; import java.util.HashMap; import java.util.LinkedList; import java.util.List; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.query.Query; +import org.caosdb.server.query.Query.Selection; /** * A class which decides whether the properties, parents, name, etc. of an entity are to be included diff --git a/src/main/java/caosdb/server/entity/xml/ToElementStrategy.java b/src/main/java/org/caosdb/server/entity/xml/ToElementStrategy.java similarity index 93% rename from src/main/java/caosdb/server/entity/xml/ToElementStrategy.java rename to src/main/java/org/caosdb/server/entity/xml/ToElementStrategy.java index 29ddc78c9eda0503ff63a903d5f8192bbf49135e..81a7074c90df84f88ff3104c84662cb9a7a56433 100644 --- a/src/main/java/caosdb/server/entity/xml/ToElementStrategy.java +++ b/src/main/java/org/caosdb/server/entity/xml/ToElementStrategy.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.EntityInterface; import org.jdom2.Element; public interface ToElementStrategy { diff --git a/src/main/java/caosdb/server/entity/xml/ToElementable.java b/src/main/java/org/caosdb/server/entity/xml/ToElementable.java similarity index 96% rename from src/main/java/caosdb/server/entity/xml/ToElementable.java rename to src/main/java/org/caosdb/server/entity/xml/ToElementable.java index 4e7b3696664501afd18250a5dc44b8b1321856da..4202111b89c91e38659f34bd6c4f89af80efd957 100644 --- a/src/main/java/caosdb/server/entity/xml/ToElementable.java +++ b/src/main/java/org/caosdb/server/entity/xml/ToElementable.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/entity/xml/VersionXMLSerializer.java b/src/main/java/org/caosdb/server/entity/xml/VersionXMLSerializer.java similarity index 96% rename from src/main/java/caosdb/server/entity/xml/VersionXMLSerializer.java rename to src/main/java/org/caosdb/server/entity/xml/VersionXMLSerializer.java index badd1a95f2a2338bde43a1de23774097ab2c45ed..65ec9880dfef43a4e460bba692ece6c9f87faa7e 100644 --- a/src/main/java/caosdb/server/entity/xml/VersionXMLSerializer.java +++ b/src/main/java/org/caosdb/server/entity/xml/VersionXMLSerializer.java @@ -18,10 +18,10 @@ * along with this program. If not, see <https://www.gnu.org/licenses/>. */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; -import caosdb.server.entity.Version; import java.util.TimeZone; +import org.caosdb.server.entity.Version; import org.jdom2.Element; /** diff --git a/src/main/java/caosdb/server/jobs/ContainerJob.java b/src/main/java/org/caosdb/server/jobs/ContainerJob.java similarity index 87% rename from src/main/java/caosdb/server/jobs/ContainerJob.java rename to src/main/java/org/caosdb/server/jobs/ContainerJob.java index 26588b682501d6675d40f5a0bd41974409e1e5c3..205b28f6338434fc9edf636aaca2ae82ddd8a896 100644 --- a/src/main/java/caosdb/server/jobs/ContainerJob.java +++ b/src/main/java/org/caosdb/server/jobs/ContainerJob.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; -import caosdb.server.entity.Message; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.utils.EntityStatus; public abstract class ContainerJob extends Job { diff --git a/src/main/java/caosdb/server/jobs/EntityJob.java b/src/main/java/org/caosdb/server/jobs/EntityJob.java similarity index 93% rename from src/main/java/caosdb/server/jobs/EntityJob.java rename to src/main/java/org/caosdb/server/jobs/EntityJob.java index 8644724ea33b02e6e586339188ee8b8f105b9177..b0dd8ecc9b2eadf6342e29b7c1d82adce57fc767 100644 --- a/src/main/java/caosdb/server/jobs/EntityJob.java +++ b/src/main/java/org/caosdb/server/jobs/EntityJob.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; -import caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.EntityInterface; public abstract class EntityJob extends Job { diff --git a/src/main/java/caosdb/server/jobs/FilesJob.java b/src/main/java/org/caosdb/server/jobs/FilesJob.java similarity index 93% rename from src/main/java/caosdb/server/jobs/FilesJob.java rename to src/main/java/org/caosdb/server/jobs/FilesJob.java index e9a02a35728b1613058402bd29bb9dc0fd31b3e3..43c89be9e8c6d35d124314050f332f7a43792496 100644 --- a/src/main/java/caosdb/server/jobs/FilesJob.java +++ b/src/main/java/org/caosdb/server/jobs/FilesJob.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; -import caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.FileProperties; public abstract class FilesJob extends EntityJob { diff --git a/src/main/java/caosdb/server/jobs/FlagJob.java b/src/main/java/org/caosdb/server/jobs/FlagJob.java similarity index 97% rename from src/main/java/caosdb/server/jobs/FlagJob.java rename to src/main/java/org/caosdb/server/jobs/FlagJob.java index 94ce2189033c4fff524907b3ed5e80de79207c55..5c039bb3601e078d6f5ebcb3a48d4c35b6c90229 100644 --- a/src/main/java/caosdb/server/jobs/FlagJob.java +++ b/src/main/java/org/caosdb/server/jobs/FlagJob.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; public abstract class FlagJob extends ContainerJob { diff --git a/src/main/java/caosdb/server/jobs/Job.java b/src/main/java/org/caosdb/server/jobs/Job.java similarity index 92% rename from src/main/java/caosdb/server/jobs/Job.java rename to src/main/java/org/caosdb/server/jobs/Job.java index ff214b977dfd870a9aa56b3e8efa4f12967b2083..1e5665524a455d8f2983e61c64ca8d7caecaaf72 100644 --- a/src/main/java/caosdb/server/jobs/Job.java +++ b/src/main/java/org/caosdb/server/jobs/Job.java @@ -22,30 +22,8 @@ * * ** end header */ -package caosdb.server.jobs; - -import caosdb.server.CaosDBException; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.transaction.GetIDByName; -import caosdb.server.database.backend.transaction.IsSubType; -import caosdb.server.database.backend.transaction.RetrieveFullEntity; -import caosdb.server.database.backend.transaction.RetrieveParents; -import caosdb.server.database.backend.transaction.RetrieveSparseEntity; -import caosdb.server.database.backend.transaction.RuleLoader; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.datatype.ReferenceDatatype2; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.jobs.core.Mode; -import caosdb.server.transaction.Transaction; -import caosdb.server.utils.AbstractObservable; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; -import caosdb.server.utils.Observer; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.jobs; + import java.lang.reflect.InvocationTargetException; import java.util.ArrayList; import java.util.HashMap; @@ -55,6 +33,28 @@ import java.util.Set; import org.apache.shiro.SecurityUtils; import org.apache.shiro.authz.Permission; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.transaction.GetIDByName; +import org.caosdb.server.database.backend.transaction.IsSubType; +import org.caosdb.server.database.backend.transaction.RetrieveFullEntity; +import org.caosdb.server.database.backend.transaction.RetrieveParents; +import org.caosdb.server.database.backend.transaction.RetrieveSparseEntity; +import org.caosdb.server.database.backend.transaction.RuleLoader; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.datatype.ReferenceDatatype2; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.jobs.core.Mode; +import org.caosdb.server.transaction.Transaction; +import org.caosdb.server.utils.AbstractObservable; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.Observer; +import org.caosdb.server.utils.ServerMessages; import org.reflections.Reflections; public abstract class Job extends AbstractObservable implements Observer { diff --git a/src/main/java/caosdb/server/jobs/JobAnnotation.java b/src/main/java/org/caosdb/server/jobs/JobAnnotation.java similarity index 94% rename from src/main/java/caosdb/server/jobs/JobAnnotation.java rename to src/main/java/org/caosdb/server/jobs/JobAnnotation.java index 96f4afcd46c2f80fe2c959bf815ca523a71cb52d..15193dcdd590745773f308c71b9ed3bb1351a413 100644 --- a/src/main/java/caosdb/server/jobs/JobAnnotation.java +++ b/src/main/java/org/caosdb/server/jobs/JobAnnotation.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; -import caosdb.server.transaction.TransactionInterface; import java.lang.annotation.Retention; import java.lang.annotation.RetentionPolicy; +import org.caosdb.server.transaction.TransactionInterface; @Retention(RetentionPolicy.RUNTIME) public @interface JobAnnotation { diff --git a/src/main/java/caosdb/server/jobs/JobExecutionTime.java b/src/main/java/org/caosdb/server/jobs/JobExecutionTime.java similarity index 97% rename from src/main/java/caosdb/server/jobs/JobExecutionTime.java rename to src/main/java/org/caosdb/server/jobs/JobExecutionTime.java index 81bb0d983de7fb920c1484fc899b91bd9abd12db..9374ab9b1c2f4c285b538b1721441f0bc7272600 100644 --- a/src/main/java/caosdb/server/jobs/JobExecutionTime.java +++ b/src/main/java/org/caosdb/server/jobs/JobExecutionTime.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; public enum JobExecutionTime { INIT, diff --git a/src/main/java/caosdb/server/jobs/JobTarget.java b/src/main/java/org/caosdb/server/jobs/JobTarget.java similarity index 96% rename from src/main/java/caosdb/server/jobs/JobTarget.java rename to src/main/java/org/caosdb/server/jobs/JobTarget.java index ec31a33370f8dc1ba69621022c0e109714cfa73d..764c70250fd050bc5a1962db8bd5bc4006ae0a70 100644 --- a/src/main/java/caosdb/server/jobs/JobTarget.java +++ b/src/main/java/org/caosdb/server/jobs/JobTarget.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; public interface JobTarget { diff --git a/src/main/java/caosdb/server/jobs/Schedule.java b/src/main/java/org/caosdb/server/jobs/Schedule.java similarity index 97% rename from src/main/java/caosdb/server/jobs/Schedule.java rename to src/main/java/org/caosdb/server/jobs/Schedule.java index 4e7f005f3d2f790008a991a0138d62013f6a545a..7f35106bcdda8ddc00512197091fa096a6bc157e 100644 --- a/src/main/java/caosdb/server/jobs/Schedule.java +++ b/src/main/java/org/caosdb/server/jobs/Schedule.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; -import caosdb.server.entity.EntityInterface; import java.util.Collection; import java.util.concurrent.CopyOnWriteArrayList; +import org.caosdb.server.entity.EntityInterface; class ScheduledJob { diff --git a/src/main/java/caosdb/server/jobs/core/AccessControl.java b/src/main/java/org/caosdb/server/jobs/core/AccessControl.java similarity index 82% rename from src/main/java/caosdb/server/jobs/core/AccessControl.java rename to src/main/java/org/caosdb/server/jobs/core/AccessControl.java index 0dd2ef4740d1a17d6e6ed8b0cc04c8d66a56c918..d1a2113a2f87018cec63d381cce64ad6c8ad09f2 100644 --- a/src/main/java/caosdb/server/jobs/core/AccessControl.java +++ b/src/main/java/org/caosdb/server/jobs/core/AccessControl.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.RetrieveSparseEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.jobs.ContainerJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.transaction.Retrieve; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.SecurityUtils; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.backend.transaction.RetrieveSparseEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.jobs.ContainerJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.transaction.Retrieve; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation(time = JobExecutionTime.INIT) public class AccessControl extends ContainerJob { diff --git a/src/main/java/caosdb/server/jobs/core/Atomic.java b/src/main/java/org/caosdb/server/jobs/core/Atomic.java similarity index 81% rename from src/main/java/caosdb/server/jobs/core/Atomic.java rename to src/main/java/org/caosdb/server/jobs/core/Atomic.java index cdc9f25d7367a9732dcdcc9a0e03dd5e359acaa2..509f87fc8515ca08daa1a5cb8ef6571dfe6fa441 100644 --- a/src/main/java/caosdb/server/jobs/core/Atomic.java +++ b/src/main/java/org/caosdb/server/jobs/core/Atomic.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.ContainerJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.transaction.WriteTransaction; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.ContainerJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.transaction.WriteTransaction; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation( time = JobExecutionTime.POST_CHECK, diff --git a/src/main/java/caosdb/server/jobs/core/CheckChildDependencyExistent.java b/src/main/java/org/caosdb/server/jobs/core/CheckChildDependencyExistent.java similarity index 92% rename from src/main/java/caosdb/server/jobs/core/CheckChildDependencyExistent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckChildDependencyExistent.java index a3d9f4e493b189e7fb49de69347c5b6149f9f885..01d5a2de394180ff474600b4597e28e5356d9b3d 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckChildDependencyExistent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckChildDependencyExistent.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.GetChildren; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import java.util.List; +import org.caosdb.server.database.backend.transaction.GetChildren; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether any children of this entity do exist. There must not be any children left when an diff --git a/src/main/java/caosdb/server/jobs/core/CheckDatatypePresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckDatatypePresent.java similarity index 92% rename from src/main/java/caosdb/server/jobs/core/CheckDatatypePresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckDatatypePresent.java index faf481dba5ac16836b4495d6112fc25c887a6f1f..ce9943ecbefb4d669003a097e74bf9baff078167 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckDatatypePresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckDatatypePresent.java @@ -20,22 +20,22 @@ * * ** end header */ -package caosdb.server.jobs.core; - -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.exceptions.EntityWasNotUniqueException; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.datatype.ReferenceDatatype2; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.Role; -import caosdb.server.jobs.EntityJob; -import caosdb.server.jobs.Job; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.jobs.core; + import java.util.List; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.exceptions.EntityWasNotUniqueException; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.datatype.ReferenceDatatype2; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Role; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.jobs.Job; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether the entity has a data type. Assign the data type of the abstract property if diff --git a/src/main/java/caosdb/server/jobs/core/CheckDescPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckDescPresent.java similarity index 89% rename from src/main/java/caosdb/server/jobs/core/CheckDescPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckDescPresent.java index b055e8fa25669aadf6cb40d65d1eb949794e3e73..fc3a5114f240c796c114f92f8e6271e4fd3bd9ac 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckDescPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckDescPresent.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether an entity has a description. diff --git a/src/main/java/caosdb/server/jobs/core/CheckEntityACLRoles.java b/src/main/java/org/caosdb/server/jobs/core/CheckEntityACLRoles.java similarity index 79% rename from src/main/java/caosdb/server/jobs/core/CheckEntityACLRoles.java rename to src/main/java/org/caosdb/server/jobs/core/CheckEntityACLRoles.java index 1106a469efda9767e95076378eea958fd10c7b70..e2dd63b1d733d737e09a6b4e86f3fe4ae4bd0e30 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckEntityACLRoles.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckEntityACLRoles.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.ContainerJob; -import caosdb.server.permissions.EntityACI; -import caosdb.server.transaction.Insert; -import caosdb.server.transaction.Update; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.ContainerJob; +import org.caosdb.server.permissions.EntityACI; +import org.caosdb.server.transaction.Insert; +import org.caosdb.server.transaction.Update; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; public class CheckEntityACLRoles extends ContainerJob { diff --git a/src/main/java/caosdb/server/jobs/core/CheckFileStorageConsistency.java b/src/main/java/org/caosdb/server/jobs/core/CheckFileStorageConsistency.java similarity index 91% rename from src/main/java/caosdb/server/jobs/core/CheckFileStorageConsistency.java rename to src/main/java/org/caosdb/server/jobs/core/CheckFileStorageConsistency.java index 5af12ad71b4b3c5b12ac8321131b4d9cb29013d5..8dc6fc0c60bc234d65f576377a89244d0a7a673e 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckFileStorageConsistency.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckFileStorageConsistency.java @@ -20,27 +20,27 @@ * * ** end header */ -package caosdb.server.jobs.core; - -import caosdb.server.CaosDBServer; -import caosdb.server.FileSystem; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.transaction.FileStorageConsistencyCheck; -import caosdb.server.transaction.Retrieve; -import caosdb.server.transaction.Transaction; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.Observable; -import caosdb.server.utils.Observer; -import caosdb.server.utils.Undoable; +package org.caosdb.server.jobs.core; + import java.io.File; import java.io.FileNotFoundException; import java.io.IOException; import java.io.PrintStream; import java.util.regex.Matcher; import java.util.regex.Pattern; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.FileSystem; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.transaction.FileStorageConsistencyCheck; +import org.caosdb.server.transaction.Retrieve; +import org.caosdb.server.transaction.Transaction; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.Observer; +import org.caosdb.server.utils.Undoable; import org.jdom2.Document; import org.jdom2.output.Format; import org.jdom2.output.XMLOutputter; @@ -210,7 +210,7 @@ public class CheckFileStorageConsistency extends FlagJob { + "test_file_storage_consistecy" + Integer.toString(hashCode())); - final Undoable undo2 = caosdb.server.utils.FileUtils.rename(f2, tmp2); + final Undoable undo2 = org.caosdb.server.utils.FileUtils.rename(f2, tmp2); final File overridden = new File(oldPath2); overridden.createNewFile(); diff --git a/src/main/java/caosdb/server/jobs/core/CheckNamePresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckNamePresent.java similarity index 89% rename from src/main/java/caosdb/server/jobs/core/CheckNamePresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckNamePresent.java index d63a9cc54d4c413a0c827a562afa023b610ff872..f1600ce42117ab5f37fccd33b79d821efeccb774 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckNamePresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckNamePresent.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether an entity has a name. diff --git a/src/main/java/caosdb/server/jobs/core/CheckNoAdditionalPropertiesPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckNoAdditionalPropertiesPresent.java similarity index 83% rename from src/main/java/caosdb/server/jobs/core/CheckNoAdditionalPropertiesPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckNoAdditionalPropertiesPresent.java index 1eb4941d47314f7f67bbe874784f2427cecdca92..b04a9151ab5c142e97a6efc9b19607896ab38daf 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckNoAdditionalPropertiesPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckNoAdditionalPropertiesPresent.java @@ -1,14 +1,14 @@ -package caosdb.server.jobs.core; - -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.jobs.EntityJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.jobs.core; + import java.util.HashSet; import java.util.Objects; import java.util.Set; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation( flag = "noAdditionalProperties", diff --git a/src/main/java/caosdb/server/jobs/core/CheckNoOverridesPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckNoOverridesPresent.java similarity index 76% rename from src/main/java/caosdb/server/jobs/core/CheckNoOverridesPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckNoOverridesPresent.java index c6b16210e7517c69c26ed6f2e8c556bf5687f7f4..e439354e88f39675491682877dd27aa54fd7a3ef 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckNoOverridesPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckNoOverridesPresent.java @@ -1,10 +1,10 @@ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.Message; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.jobs.EntityJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation( flag = "noOverrides", diff --git a/src/main/java/caosdb/server/jobs/core/CheckParOblPropPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckParOblPropPresent.java similarity index 92% rename from src/main/java/caosdb/server/jobs/core/CheckParOblPropPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckParOblPropPresent.java index bee056c5763593ce6ef6a71f713019fae30a8bb5..c592eca81394e4a92582fd3d2286b5ac0507dcce 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckParOblPropPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckParOblPropPresent.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.RetrieveFullEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.StatementStatus; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.database.backend.transaction.RetrieveFullEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether an entity implements all obligatory properties of all parents. diff --git a/src/main/java/caosdb/server/jobs/core/CheckParPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckParPresent.java similarity index 89% rename from src/main/java/caosdb/server/jobs/core/CheckParPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckParPresent.java index 7318e45f62c02378aec36a36b6915223f745e79e..8851456c236c0afd9f922f187089adc5f4e35ab1 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckParPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckParPresent.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether an entity has at least one parent. diff --git a/src/main/java/caosdb/server/jobs/core/CheckParValid.java b/src/main/java/org/caosdb/server/jobs/core/CheckParValid.java similarity index 91% rename from src/main/java/caosdb/server/jobs/core/CheckParValid.java rename to src/main/java/org/caosdb/server/jobs/core/CheckParValid.java index 560558dce6e494fa4857fefadfa7d22ef79ee5aa..c6d10a8f4f7cd0656f571a4cbf70385ab9cb7725 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckParValid.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckParValid.java @@ -20,21 +20,21 @@ * * ** end header */ -package caosdb.server.jobs.core; - -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.exceptions.EntityWasNotUniqueException; -import caosdb.server.entity.Affiliation; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.Role; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.jobs.EntityJob; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.jobs.core; + import com.google.common.base.Objects; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.exceptions.EntityWasNotUniqueException; +import org.caosdb.server.entity.Affiliation; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether all parents of an entity are valid/qualified. diff --git a/src/main/java/caosdb/server/jobs/core/CheckPropPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckPropPresent.java similarity index 89% rename from src/main/java/caosdb/server/jobs/core/CheckPropPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckPropPresent.java index 3d8c44fd824df8f00a021ba2098b58c65d7eac3f..31a460971bc80ccf61d775c96b4632fa38f14f66 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckPropPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckPropPresent.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether at least one property is present. diff --git a/src/main/java/caosdb/server/jobs/core/CheckPropValid.java b/src/main/java/org/caosdb/server/jobs/core/CheckPropValid.java similarity index 90% rename from src/main/java/caosdb/server/jobs/core/CheckPropValid.java rename to src/main/java/org/caosdb/server/jobs/core/CheckPropValid.java index 5e199e848984a4d042c3a755d83a8d57ba91987f..10ce6295a5b4910084d769278ca6348287e6223a 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckPropValid.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckPropValid.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.server.jobs.core; - -import static caosdb.server.utils.ServerMessages.ENTITY_DOES_NOT_EXIST; - -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.exceptions.EntityWasNotUniqueException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.jobs.EntityJob; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.jobs.core; + +import static org.caosdb.server.utils.ServerMessages.ENTITY_DOES_NOT_EXIST; + import com.google.common.base.Objects; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.exceptions.EntityWasNotUniqueException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether all properties of an entity are valid or qualified. diff --git a/src/main/java/caosdb/server/jobs/core/CheckQueryTemplate.java b/src/main/java/org/caosdb/server/jobs/core/CheckQueryTemplate.java similarity index 85% rename from src/main/java/caosdb/server/jobs/core/CheckQueryTemplate.java rename to src/main/java/org/caosdb/server/jobs/core/CheckQueryTemplate.java index e675accb6d571620dfb39df47f1104965cb8866b..1b5ccb41f58b92d2230fb99e5635ad02bd9922f5 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckQueryTemplate.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckQueryTemplate.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.Role; -import caosdb.server.jobs.EntityJob; -import caosdb.server.query.Query; -import caosdb.server.query.Query.ParsingException; -import caosdb.server.query.Query.Type; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Role; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.query.Query; +import org.caosdb.server.query.Query.ParsingException; +import org.caosdb.server.query.Query.Type; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; public class CheckQueryTemplate extends EntityJob { diff --git a/src/main/java/caosdb/server/jobs/core/CheckReferenceDependencyExistent.java b/src/main/java/org/caosdb/server/jobs/core/CheckReferenceDependencyExistent.java similarity index 92% rename from src/main/java/caosdb/server/jobs/core/CheckReferenceDependencyExistent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckReferenceDependencyExistent.java index fd5eaab0f0d302e9b5586693ef502c32d607d773..c59eededd391645737b614f5f2e97699160c8cf7 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckReferenceDependencyExistent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckReferenceDependencyExistent.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.GetDependentEntities; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import java.util.List; +import org.caosdb.server.database.backend.transaction.GetDependentEntities; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether an entity is referenced by other entities. In the event that someone wants to diff --git a/src/main/java/caosdb/server/jobs/core/CheckRefidIsaParRefid.java b/src/main/java/org/caosdb/server/jobs/core/CheckRefidIsaParRefid.java similarity index 87% rename from src/main/java/caosdb/server/jobs/core/CheckRefidIsaParRefid.java rename to src/main/java/org/caosdb/server/jobs/core/CheckRefidIsaParRefid.java index 04a1ac8c5bf6aa42bf2dcec803e6bc1b68a3a7f0..59fcfe1d877ca61c98674ee85919f03b7bd4278e 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckRefidIsaParRefid.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckRefidIsaParRefid.java @@ -20,24 +20,24 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.CollectionValue; -import caosdb.server.datatype.FileDatatype; -import caosdb.server.datatype.IndexedSingleValue; -import caosdb.server.datatype.ReferenceDatatype2; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.entity.Role; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.CollectionValue; +import org.caosdb.server.datatype.FileDatatype; +import org.caosdb.server.datatype.IndexedSingleValue; +import org.caosdb.server.datatype.ReferenceDatatype2; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.ServerMessages; /** * Check if the referenced entity is in the scope of the data type. E.g. if the data type is diff --git a/src/main/java/caosdb/server/jobs/core/CheckRefidPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckRefidPresent.java similarity index 93% rename from src/main/java/caosdb/server/jobs/core/CheckRefidPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckRefidPresent.java index 7af03b314b6894269e62766b63adad08a13d1fe8..17d9bc7c9fbbfd37d64446a8b21ff65afca9391d 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckRefidPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckRefidPresent.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.jobs.EntityJob; +import org.caosdb.server.jobs.EntityJob; public class CheckRefidPresent extends EntityJob { @Override diff --git a/src/main/java/caosdb/server/jobs/core/CheckRefidValid.java b/src/main/java/org/caosdb/server/jobs/core/CheckRefidValid.java similarity index 88% rename from src/main/java/caosdb/server/jobs/core/CheckRefidValid.java rename to src/main/java/org/caosdb/server/jobs/core/CheckRefidValid.java index 36591070cd64558114bb56e22860b95f42fc6463..42476f87b43496e162b6eb036480b6b745ee91f2 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckRefidValid.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckRefidValid.java @@ -22,23 +22,23 @@ * * ** end header */ -package caosdb.server.jobs.core; - -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.exceptions.EntityWasNotUniqueException; -import caosdb.server.datatype.AbstractCollectionDatatype; -import caosdb.server.datatype.CollectionValue; -import caosdb.server.datatype.IndexedSingleValue; -import caosdb.server.datatype.ReferenceDatatype; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.jobs.EntityJob; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.jobs.core; + +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.exceptions.EntityWasNotUniqueException; +import org.caosdb.server.datatype.AbstractCollectionDatatype; +import org.caosdb.server.datatype.CollectionValue; +import org.caosdb.server.datatype.IndexedSingleValue; +import org.caosdb.server.datatype.ReferenceDatatype; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.ServerMessages; /** * Check whether a reference property is pointing to a valid entity. diff --git a/src/main/java/caosdb/server/jobs/core/CheckTargetPathValid.java b/src/main/java/org/caosdb/server/jobs/core/CheckTargetPathValid.java similarity index 87% rename from src/main/java/caosdb/server/jobs/core/CheckTargetPathValid.java rename to src/main/java/org/caosdb/server/jobs/core/CheckTargetPathValid.java index 404e6b3a0d82950061ba4168a7a6f32e5f847400..7d06498f5d9e4fbc382e7dde025983ceac6a7fdc 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckTargetPathValid.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckTargetPathValid.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.FileSystem; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.FileSystem; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether the target path of a file entity is valid. That is, the target path is in the file diff --git a/src/main/java/caosdb/server/jobs/core/CheckUnitPresent.java b/src/main/java/org/caosdb/server/jobs/core/CheckUnitPresent.java similarity index 86% rename from src/main/java/caosdb/server/jobs/core/CheckUnitPresent.java rename to src/main/java/org/caosdb/server/jobs/core/CheckUnitPresent.java index 5b923769025dd49fb3ac0a9339f674edc37c022c..aa87ecfff69635407bc90d372c89f089e4f308dc 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckUnitPresent.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckUnitPresent.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.MagicTypes; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.MagicTypes; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * Check whether this entity has a unit property. diff --git a/src/main/java/caosdb/server/jobs/core/CheckValueParsable.java b/src/main/java/org/caosdb/server/jobs/core/CheckValueParsable.java similarity index 91% rename from src/main/java/caosdb/server/jobs/core/CheckValueParsable.java rename to src/main/java/org/caosdb/server/jobs/core/CheckValueParsable.java index 3140952d673798fdf120c721489be67ae31e0414..34e1960961f72118567653a77e4f48fe357dfedc 100644 --- a/src/main/java/caosdb/server/jobs/core/CheckValueParsable.java +++ b/src/main/java/org/caosdb/server/jobs/core/CheckValueParsable.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; /** * Check whether the value of an entity is parsable according to the entity's data type. This job diff --git a/src/main/java/caosdb/server/jobs/core/DebugCalls.java b/src/main/java/org/caosdb/server/jobs/core/DebugCalls.java similarity index 88% rename from src/main/java/caosdb/server/jobs/core/DebugCalls.java rename to src/main/java/org/caosdb/server/jobs/core/DebugCalls.java index b56fb6fbef4a2b3f53c0d5aa66f9bf244307be5e..8527560d02e498bf3812162a8b01b9641aad7260 100644 --- a/src/main/java/caosdb/server/jobs/core/DebugCalls.java +++ b/src/main/java/org/caosdb/server/jobs/core/DebugCalls.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.CaosDBServer; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; @JobAnnotation( flag = "debug", diff --git a/src/main/java/caosdb/server/jobs/core/ExecuteQuery.java b/src/main/java/org/caosdb/server/jobs/core/ExecuteQuery.java similarity index 81% rename from src/main/java/caosdb/server/jobs/core/ExecuteQuery.java rename to src/main/java/org/caosdb/server/jobs/core/ExecuteQuery.java index 6de19d6006dd31bde9fcff033f1808e6e4aac276..b6583f024071e3c1151cf974b387ffe72d1579b7 100644 --- a/src/main/java/caosdb/server/jobs/core/ExecuteQuery.java +++ b/src/main/java/org/caosdb/server/jobs/core/ExecuteQuery.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.Message; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.query.Query; -import caosdb.server.query.Query.ParsingException; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.Message; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.query.Query; +import org.caosdb.server.query.Query.ParsingException; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation(flag = "query", time = JobExecutionTime.INIT) public class ExecuteQuery extends FlagJob { diff --git a/src/main/java/caosdb/server/jobs/core/History.java b/src/main/java/org/caosdb/server/jobs/core/History.java similarity index 79% rename from src/main/java/caosdb/server/jobs/core/History.java rename to src/main/java/org/caosdb/server/jobs/core/History.java index ee72413a46e65f8b8a020315e3c2e93c7b8ccd97..a7c58979f49b2a7abdc313924dc8fb6b86bbffd4 100644 --- a/src/main/java/caosdb/server/jobs/core/History.java +++ b/src/main/java/org/caosdb/server/jobs/core/History.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.RetrieveTransactionHistory; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.database.backend.transaction.RetrieveTransactionHistory; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation(time = JobExecutionTime.POST_TRANSACTION, flag = "H") public class History extends FlagJob { diff --git a/src/main/java/caosdb/server/jobs/core/Inheritance.java b/src/main/java/org/caosdb/server/jobs/core/Inheritance.java similarity index 94% rename from src/main/java/caosdb/server/jobs/core/Inheritance.java rename to src/main/java/org/caosdb/server/jobs/core/Inheritance.java index f7149eb3c74270012db011385e17bbf01fdd01a2..3c08f9f281335c64a2af28ae131ff99d2c5ed6ca 100644 --- a/src/main/java/caosdb/server/jobs/core/Inheritance.java +++ b/src/main/java/org/caosdb/server/jobs/core/Inheritance.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.RetrieveFullEntity; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.jobs.EntityJob; -import caosdb.server.transaction.Insert; -import caosdb.server.transaction.Update; -import caosdb.server.utils.EntityStatus; import java.util.ArrayList; +import org.caosdb.server.database.backend.transaction.RetrieveFullEntity; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.transaction.Insert; +import org.caosdb.server.transaction.Update; +import org.caosdb.server.utils.EntityStatus; public class Inheritance extends EntityJob { diff --git a/src/main/java/caosdb/server/jobs/core/InsertFilesInDir.java b/src/main/java/org/caosdb/server/jobs/core/InsertFilesInDir.java similarity index 93% rename from src/main/java/caosdb/server/jobs/core/InsertFilesInDir.java rename to src/main/java/org/caosdb/server/jobs/core/InsertFilesInDir.java index 6b3144eb08b471ea90b836978c76b4ff643c313d..73d7ee3f5be0b8847ce322f6774719b7f5a768c2 100644 --- a/src/main/java/caosdb/server/jobs/core/InsertFilesInDir.java +++ b/src/main/java/org/caosdb/server/jobs/core/InsertFilesInDir.java @@ -20,34 +20,34 @@ * * ** end header */ -package caosdb.server.jobs.core; - -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.FileSystem; -import caosdb.server.ServerProperties; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.misc.RollBackHandler; -import caosdb.server.entity.Entity; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.entity.Role; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.Job; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.transaction.Retrieve; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.Undoable; -import caosdb.server.utils.Utils; +package org.caosdb.server.jobs.core; + import java.io.File; import java.io.IOException; import java.util.LinkedList; import java.util.List; import java.util.regex.Matcher; import java.util.regex.Pattern; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.FileSystem; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.misc.RollBackHandler; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.entity.Role; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.Job; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.transaction.Retrieve; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.Undoable; +import org.caosdb.server.utils.Utils; @JobAnnotation( flag = "InsertFilesInDir", diff --git a/src/main/java/caosdb/server/jobs/core/LoadContainerFlagJobs.java b/src/main/java/org/caosdb/server/jobs/core/LoadContainerFlagJobs.java similarity index 85% rename from src/main/java/caosdb/server/jobs/core/LoadContainerFlagJobs.java rename to src/main/java/org/caosdb/server/jobs/core/LoadContainerFlagJobs.java index 9df5e601afd7839887164b87ae1ea00a892d1bb7..89f381d648144e274325c5c71a57c9f4daf04895 100644 --- a/src/main/java/caosdb/server/jobs/core/LoadContainerFlagJobs.java +++ b/src/main/java/org/caosdb/server/jobs/core/LoadContainerFlagJobs.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.jobs.ContainerJob; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.Job; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; import java.util.Map.Entry; +import org.caosdb.server.jobs.ContainerJob; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.Job; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; @JobAnnotation(time = JobExecutionTime.INIT) public class LoadContainerFlagJobs extends ContainerJob { diff --git a/src/main/java/caosdb/server/jobs/core/MatchFileProp.java b/src/main/java/org/caosdb/server/jobs/core/MatchFileProp.java similarity index 92% rename from src/main/java/caosdb/server/jobs/core/MatchFileProp.java rename to src/main/java/org/caosdb/server/jobs/core/MatchFileProp.java index 7d193ebca7b3027b48edd55866526d8fb5025cb2..cef8b2b8ae9764ceb1e4bd2636c2b532d7e9415b 100644 --- a/src/main/java/caosdb/server/jobs/core/MatchFileProp.java +++ b/src/main/java/org/caosdb/server/jobs/core/MatchFileProp.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.FileProperties; -import caosdb.server.jobs.FilesJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.jobs.FilesJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.ServerMessages; /** * Match the checksum and the size of a file record to the uploaded file's checksum and size. diff --git a/src/main/java/caosdb/server/jobs/core/Mode.java b/src/main/java/org/caosdb/server/jobs/core/Mode.java similarity index 96% rename from src/main/java/caosdb/server/jobs/core/Mode.java rename to src/main/java/org/caosdb/server/jobs/core/Mode.java index 9814caed2d5aaa790c5706d2ed9d116f3f1ff740..561a4b0c5fcb4e2c8c66a2b9f9a02ea91c44c119 100644 --- a/src/main/java/caosdb/server/jobs/core/Mode.java +++ b/src/main/java/org/caosdb/server/jobs/core/Mode.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; public enum Mode { MUST, diff --git a/src/main/java/caosdb/server/jobs/core/NoCache.java b/src/main/java/org/caosdb/server/jobs/core/NoCache.java similarity index 90% rename from src/main/java/caosdb/server/jobs/core/NoCache.java rename to src/main/java/org/caosdb/server/jobs/core/NoCache.java index f301e9b9819c002f67b059ea7415715fff3e9dd0..a4f639392ac63a97f2f025dfe6717a664114c561 100644 --- a/src/main/java/caosdb/server/jobs/core/NoCache.java +++ b/src/main/java/org/caosdb/server/jobs/core/NoCache.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; @JobAnnotation( flag = "cache", diff --git a/src/main/java/caosdb/server/jobs/core/Paging.java b/src/main/java/org/caosdb/server/jobs/core/Paging.java similarity index 86% rename from src/main/java/caosdb/server/jobs/core/Paging.java rename to src/main/java/org/caosdb/server/jobs/core/Paging.java index f0d0d6a66d3f2f11788a1b52ab68e476b44b3c87..43683639f75c08be394a38ce03e91282405f333d 100644 --- a/src/main/java/caosdb/server/jobs/core/Paging.java +++ b/src/main/java/org/caosdb/server/jobs/core/Paging.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.transaction.Retrieve; -import caosdb.server.utils.EntityStatus; import java.util.regex.Matcher; import java.util.regex.Pattern; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.transaction.Retrieve; +import org.caosdb.server.utils.EntityStatus; @JobAnnotation(flag = "P", time = JobExecutionTime.PRE_TRANSACTION) public class Paging extends FlagJob { diff --git a/src/main/java/caosdb/server/jobs/core/ParseUnit.java b/src/main/java/org/caosdb/server/jobs/core/ParseUnit.java similarity index 80% rename from src/main/java/caosdb/server/jobs/core/ParseUnit.java rename to src/main/java/org/caosdb/server/jobs/core/ParseUnit.java index 2dbde3111e3bd5a8552c43fe1c0e95a73294414a..8e0a7818ea3c7567456115dafe5b3b2593f7511b 100644 --- a/src/main/java/caosdb/server/jobs/core/ParseUnit.java +++ b/src/main/java/org/caosdb/server/jobs/core/ParseUnit.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.datatype.SingleValue; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.MagicTypes; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; -import caosdb.unit.CaosDBSystemOfUnits; -import caosdb.unit.Unit; -import caosdb.unit.UnknownUnit; import de.timmfitschen.easyunits.parser.ParserException; +import org.caosdb.server.datatype.SingleValue; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.MagicTypes; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.unit.CaosDBSystemOfUnits; +import org.caosdb.unit.Unit; +import org.caosdb.unit.UnknownUnit; public class ParseUnit extends EntityJob { diff --git a/src/main/java/caosdb/server/jobs/core/PickUp.java b/src/main/java/org/caosdb/server/jobs/core/PickUp.java similarity index 85% rename from src/main/java/caosdb/server/jobs/core/PickUp.java rename to src/main/java/org/caosdb/server/jobs/core/PickUp.java index 542e7ee5cbb022c2456af0e305ef37ca02482dda..dff574a4ad0aa5199fe3ccdfdd9c72d2a7b2bb67 100644 --- a/src/main/java/caosdb/server/jobs/core/PickUp.java +++ b/src/main/java/org/caosdb/server/jobs/core/PickUp.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.FileSystem; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.jobs.EntityJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.Observable; import java.io.File; +import org.caosdb.server.FileSystem; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.Observable; @JobAnnotation(time = JobExecutionTime.INIT) public class PickUp extends EntityJob { diff --git a/src/main/java/caosdb/server/jobs/core/ProcessNameProperties.java b/src/main/java/org/caosdb/server/jobs/core/ProcessNameProperties.java similarity index 90% rename from src/main/java/caosdb/server/jobs/core/ProcessNameProperties.java rename to src/main/java/org/caosdb/server/jobs/core/ProcessNameProperties.java index 0a82c10108b054d45752756c14597d738b6a45f9..950c61d36255b68f52e3066616b1dee5d9f259c3 100644 --- a/src/main/java/caosdb/server/jobs/core/ProcessNameProperties.java +++ b/src/main/java/org/caosdb/server/jobs/core/ProcessNameProperties.java @@ -20,22 +20,22 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import static caosdb.server.entity.MagicTypes.NAME; +import static org.caosdb.server.entity.MagicTypes.NAME; -import caosdb.server.datatype.AbstractDatatype; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.jobs.EntityJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import java.util.ArrayList; import java.util.Collection; import java.util.HashSet; import java.util.Set; +import org.caosdb.server.datatype.AbstractDatatype; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; /** * To be called after CheckPropValid. diff --git a/src/main/java/caosdb/server/jobs/core/RemoveDuplicates.java b/src/main/java/org/caosdb/server/jobs/core/RemoveDuplicates.java similarity index 92% rename from src/main/java/caosdb/server/jobs/core/RemoveDuplicates.java rename to src/main/java/org/caosdb/server/jobs/core/RemoveDuplicates.java index a09f66533cb3bc3c7cc01b2d6931bc120f87f7a7..3d3adcc1e1175d7aed95bba64d9d81d13b70f495 100644 --- a/src/main/java/caosdb/server/jobs/core/RemoveDuplicates.java +++ b/src/main/java/org/caosdb/server/jobs/core/RemoveDuplicates.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.ContainerJob; import java.util.HashSet; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.ContainerJob; public class RemoveDuplicates extends ContainerJob { diff --git a/src/main/java/caosdb/server/jobs/core/ResolveNames.java b/src/main/java/org/caosdb/server/jobs/core/ResolveNames.java similarity index 80% rename from src/main/java/caosdb/server/jobs/core/ResolveNames.java rename to src/main/java/org/caosdb/server/jobs/core/ResolveNames.java index a7781fb4c1fd82d8a1f14df01da152b50ce86ae3..d0a1f0768b77fa7bd110019dd95220f65ad256f2 100644 --- a/src/main/java/caosdb/server/jobs/core/ResolveNames.java +++ b/src/main/java/org/caosdb/server/jobs/core/ResolveNames.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.GetIDByName; -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.jobs.ContainerJob; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.database.backend.transaction.GetIDByName; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.jobs.ContainerJob; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; public class ResolveNames extends ContainerJob { diff --git a/src/main/java/caosdb/server/jobs/core/RetrieveACL.java b/src/main/java/org/caosdb/server/jobs/core/RetrieveACL.java similarity index 81% rename from src/main/java/caosdb/server/jobs/core/RetrieveACL.java rename to src/main/java/org/caosdb/server/jobs/core/RetrieveACL.java index 8446d586d9cac2043cda0ab1cd80732e83d96fda..f59b2c1ec94de846714575537516c41d18bf4629 100644 --- a/src/main/java/caosdb/server/jobs/core/RetrieveACL.java +++ b/src/main/java/org/caosdb/server/jobs/core/RetrieveACL.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.transaction.Retrieve; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.transaction.Retrieve; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; @JobAnnotation( diff --git a/src/main/java/caosdb/server/jobs/core/RetrieveAllJob.java b/src/main/java/org/caosdb/server/jobs/core/RetrieveAllJob.java similarity index 83% rename from src/main/java/caosdb/server/jobs/core/RetrieveAllJob.java rename to src/main/java/org/caosdb/server/jobs/core/RetrieveAllJob.java index 0fba1223a3bd0e984c5c2b6ff43dd58070b5bbc5..1ca43cec45413d80c307df2f4d09c6b8d34cfb49 100644 --- a/src/main/java/caosdb/server/jobs/core/RetrieveAllJob.java +++ b/src/main/java/org/caosdb/server/jobs/core/RetrieveAllJob.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.RetrieveAll; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.database.backend.transaction.RetrieveAll; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; @JobAnnotation(flag = "all", time = JobExecutionTime.INIT) public class RetrieveAllJob extends FlagJob { diff --git a/src/main/java/caosdb/server/jobs/core/RetrieveIdOnlyFlag.java b/src/main/java/org/caosdb/server/jobs/core/RetrieveIdOnlyFlag.java similarity index 83% rename from src/main/java/caosdb/server/jobs/core/RetrieveIdOnlyFlag.java rename to src/main/java/org/caosdb/server/jobs/core/RetrieveIdOnlyFlag.java index 04dbf3632439d590c36425d3d1d0499333f76a8c..1712950dff9403df54f26457d0b6a763d7ce4de8 100644 --- a/src/main/java/caosdb/server/jobs/core/RetrieveIdOnlyFlag.java +++ b/src/main/java/org/caosdb/server/jobs/core/RetrieveIdOnlyFlag.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.utils.EntityStatus; @JobAnnotation(flag = "IdOnly", time = JobExecutionTime.PRE_TRANSACTION) public class RetrieveIdOnlyFlag extends FlagJob { diff --git a/src/main/java/caosdb/server/jobs/core/RetrieveOwner.java b/src/main/java/org/caosdb/server/jobs/core/RetrieveOwner.java similarity index 82% rename from src/main/java/caosdb/server/jobs/core/RetrieveOwner.java rename to src/main/java/org/caosdb/server/jobs/core/RetrieveOwner.java index 3c7fae64f16c3f7c0a6aa4791c404b640a26cb2b..7377805805ec55e2c3c3928cc42b0c053d8a9c9d 100644 --- a/src/main/java/caosdb/server/jobs/core/RetrieveOwner.java +++ b/src/main/java/org/caosdb/server/jobs/core/RetrieveOwner.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.permissions.ResponsibleAgent; -import caosdb.server.transaction.Retrieve; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import java.util.List; import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.permissions.ResponsibleAgent; +import org.caosdb.server.transaction.Retrieve; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; @JobAnnotation( diff --git a/src/main/java/caosdb/server/jobs/core/RetriveAllNames.java b/src/main/java/org/caosdb/server/jobs/core/RetriveAllNames.java similarity index 63% rename from src/main/java/caosdb/server/jobs/core/RetriveAllNames.java rename to src/main/java/org/caosdb/server/jobs/core/RetriveAllNames.java index d7f58e00c602d5ed9a79d9e03fa08d9941e64217..dfd69a5cb5a40a6e6be35e345f17e38f3dbb7e2e 100644 --- a/src/main/java/caosdb/server/jobs/core/RetriveAllNames.java +++ b/src/main/java/org/caosdb/server/jobs/core/RetriveAllNames.java @@ -1,12 +1,12 @@ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.GetAllNames; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; +import org.caosdb.server.database.backend.transaction.GetAllNames; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; /** * A jobs which retrieves all known names for which the requesting user has the RETRIEVE_ENTITY diff --git a/src/main/java/caosdb/server/jobs/core/SetImpToFix.java b/src/main/java/org/caosdb/server/jobs/core/SetImpToFix.java similarity index 89% rename from src/main/java/caosdb/server/jobs/core/SetImpToFix.java rename to src/main/java/org/caosdb/server/jobs/core/SetImpToFix.java index 09566b337c695daf3694c31dc49f93cd4d10bc8a..f0047d02f861ef26cbad12b4e6a5963d51415eec 100644 --- a/src/main/java/caosdb/server/jobs/core/SetImpToFix.java +++ b/src/main/java/org/caosdb/server/jobs/core/SetImpToFix.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.StatementStatus; -import caosdb.server.jobs.EntityJob; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.jobs.EntityJob; /** * Set the statement status of all properties of an entity to the value "FIX". diff --git a/src/main/java/caosdb/server/jobs/core/SetImpToRecByDefault.java b/src/main/java/org/caosdb/server/jobs/core/SetImpToRecByDefault.java similarity index 91% rename from src/main/java/caosdb/server/jobs/core/SetImpToRecByDefault.java rename to src/main/java/org/caosdb/server/jobs/core/SetImpToRecByDefault.java index dbce7d873243fe136e1fd26e64c958b5ba7b345e..dd6cfc0820d9cd15281897a200f82d2c7d9d02bb 100644 --- a/src/main/java/caosdb/server/jobs/core/SetImpToRecByDefault.java +++ b/src/main/java/org/caosdb/server/jobs/core/SetImpToRecByDefault.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.StatementStatus; -import caosdb.server.jobs.EntityJob; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.jobs.EntityJob; /** * Set the statement status of all properties of an entity which do not have a statement status to diff --git a/src/main/java/caosdb/server/jobs/core/Strict.java b/src/main/java/org/caosdb/server/jobs/core/Strict.java similarity index 79% rename from src/main/java/caosdb/server/jobs/core/Strict.java rename to src/main/java/org/caosdb/server/jobs/core/Strict.java index bb8d9af2aa3eb402c05419144f2f3543017f3833..aebbecf86a89476339dbdef8892b074aebc8196d 100644 --- a/src/main/java/caosdb/server/jobs/core/Strict.java +++ b/src/main/java/org/caosdb/server/jobs/core/Strict.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.jobs.ContainerJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.jobs.ContainerJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation(time = JobExecutionTime.POST_CHECK) public class Strict extends ContainerJob { diff --git a/src/main/java/caosdb/server/jobs/core/TestMail.java b/src/main/java/org/caosdb/server/jobs/core/TestMail.java similarity index 81% rename from src/main/java/caosdb/server/jobs/core/TestMail.java rename to src/main/java/org/caosdb/server/jobs/core/TestMail.java index e529265a36cac6b483215500edc5b9793ef60afc..fb3e87097fae44f3f1f609dd7e347c27c6d971c2 100644 --- a/src/main/java/caosdb/server/jobs/core/TestMail.java +++ b/src/main/java/org/caosdb/server/jobs/core/TestMail.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.Utils; -import caosdb.server.utils.mail.Mail; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.Utils; +import org.caosdb.server.utils.mail.Mail; @JobAnnotation( flag = "testMail", diff --git a/src/main/java/caosdb/server/jobs/core/UniqueName.java b/src/main/java/org/caosdb/server/jobs/core/UniqueName.java similarity index 83% rename from src/main/java/caosdb/server/jobs/core/UniqueName.java rename to src/main/java/org/caosdb/server/jobs/core/UniqueName.java index 65b41253a34de0ad3e01b727e03fc4541746a222..300e32bf1662e4990f52bda0570a65c05e5d60b8 100644 --- a/src/main/java/caosdb/server/jobs/core/UniqueName.java +++ b/src/main/java/org/caosdb/server/jobs/core/UniqueName.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.exceptions.EntityWasNotUniqueException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.exceptions.EntityWasNotUniqueException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; @JobAnnotation(flag = "uniquename") public class UniqueName extends FlagJob { diff --git a/src/main/java/caosdb/server/jobs/core/UpdateUnitConverters.java b/src/main/java/org/caosdb/server/jobs/core/UpdateUnitConverters.java similarity index 87% rename from src/main/java/caosdb/server/jobs/core/UpdateUnitConverters.java rename to src/main/java/org/caosdb/server/jobs/core/UpdateUnitConverters.java index 8d0118b80582e3a65b613caae2200719af428819..b3ef80adb64fcf3c1007a33a64bde691c9ff9c1d 100644 --- a/src/main/java/caosdb/server/jobs/core/UpdateUnitConverters.java +++ b/src/main/java/org/caosdb/server/jobs/core/UpdateUnitConverters.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; -import caosdb.server.database.backend.transaction.InsertLinCon; -import caosdb.server.jobs.EntityJob; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.unit.Converter; -import caosdb.unit.LinearConverter; -import caosdb.unit.Unit; +import org.caosdb.server.database.backend.transaction.InsertLinCon; +import org.caosdb.server.jobs.EntityJob; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.unit.Converter; +import org.caosdb.unit.LinearConverter; +import org.caosdb.unit.Unit; @JobAnnotation(time = JobExecutionTime.PRE_TRANSACTION) public class UpdateUnitConverters extends EntityJob { diff --git a/src/main/java/caosdb/server/logging/RequestErrorLogMessage.java b/src/main/java/org/caosdb/server/logging/RequestErrorLogMessage.java similarity index 97% rename from src/main/java/caosdb/server/logging/RequestErrorLogMessage.java rename to src/main/java/org/caosdb/server/logging/RequestErrorLogMessage.java index ddffe7d512a7e31043883f238fd4fc2136d853bf..58217ca1882bd4ea25d92d8aeb482d846e3b94df 100644 --- a/src/main/java/caosdb/server/logging/RequestErrorLogMessage.java +++ b/src/main/java/org/caosdb/server/logging/RequestErrorLogMessage.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.logging; +package org.caosdb.server.logging; -import caosdb.server.resource.ReReadableRepresentation; import java.io.IOException; import java.io.Serializable; import java.io.UnsupportedEncodingException; import java.net.URLDecoder; +import org.caosdb.server.resource.ReReadableRepresentation; import org.restlet.Message; import org.restlet.Request; import org.restlet.Response; diff --git a/src/main/java/caosdb/server/logging/log4j/CustomConfigurationFactory.java b/src/main/java/org/caosdb/server/logging/log4j/CustomConfigurationFactory.java similarity index 98% rename from src/main/java/caosdb/server/logging/log4j/CustomConfigurationFactory.java rename to src/main/java/org/caosdb/server/logging/log4j/CustomConfigurationFactory.java index 6b7a456909074080f6e99670e1eed9b934653977..62722317f882dffae4168808514a6d972ae8bfe6 100644 --- a/src/main/java/caosdb/server/logging/log4j/CustomConfigurationFactory.java +++ b/src/main/java/org/caosdb/server/logging/log4j/CustomConfigurationFactory.java @@ -1,4 +1,4 @@ -package caosdb.server.logging.log4j; +package org.caosdb.server.logging.log4j; import java.io.File; import java.net.URI; diff --git a/src/main/java/caosdb/server/permissions/AbstractEntityACLFactory.java b/src/main/java/org/caosdb/server/permissions/AbstractEntityACLFactory.java similarity index 99% rename from src/main/java/caosdb/server/permissions/AbstractEntityACLFactory.java rename to src/main/java/org/caosdb/server/permissions/AbstractEntityACLFactory.java index 5d8174711c2dfd06798c5f5690b61540f55e5c56..3a3d03d18bc7b0913a522e2edd6c235f9a7d39a7 100644 --- a/src/main/java/caosdb/server/permissions/AbstractEntityACLFactory.java +++ b/src/main/java/org/caosdb/server/permissions/AbstractEntityACLFactory.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import java.util.ArrayList; import java.util.Collection; diff --git a/src/main/java/caosdb/server/permissions/CaosPermission.java b/src/main/java/org/caosdb/server/permissions/CaosPermission.java similarity index 98% rename from src/main/java/caosdb/server/permissions/CaosPermission.java rename to src/main/java/org/caosdb/server/permissions/CaosPermission.java index 71d5403848a44f02220d84237171e43a6406c492..73bc4d780043cbb6b61b68d033b2a039fcbd85f8 100644 --- a/src/main/java/caosdb/server/permissions/CaosPermission.java +++ b/src/main/java/org/caosdb/server/permissions/CaosPermission.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import java.util.HashSet; import java.util.Map; diff --git a/src/main/java/caosdb/server/permissions/EntityACI.java b/src/main/java/org/caosdb/server/permissions/EntityACI.java similarity index 98% rename from src/main/java/caosdb/server/permissions/EntityACI.java rename to src/main/java/org/caosdb/server/permissions/EntityACI.java index 4b960f49beedec9df2a15084ac77e9508670df0f..ccc889decafc941484432c99bf48908c21dff209 100644 --- a/src/main/java/caosdb/server/permissions/EntityACI.java +++ b/src/main/java/org/caosdb/server/permissions/EntityACI.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import java.util.HashMap; diff --git a/src/main/java/caosdb/server/permissions/EntityACL.java b/src/main/java/org/caosdb/server/permissions/EntityACL.java similarity index 96% rename from src/main/java/caosdb/server/permissions/EntityACL.java rename to src/main/java/org/caosdb/server/permissions/EntityACL.java index e0bfcf9243eb436f9af0d6a3bacfabb79984538c..df1915bd460079eb52dfc6d4f3bbf4fe42795918 100644 --- a/src/main/java/caosdb/server/permissions/EntityACL.java +++ b/src/main/java/org/caosdb/server/permissions/EntityACL.java @@ -20,16 +20,11 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; -import static caosdb.server.permissions.Role.OTHER_ROLE; -import static caosdb.server.permissions.Role.OWNER_ROLE; +import static org.caosdb.server.permissions.Role.OTHER_ROLE; +import static org.caosdb.server.permissions.Role.OWNER_ROLE; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.exceptions.TransactionException; import java.io.File; import java.io.IOException; import java.util.ArrayList; @@ -41,6 +36,11 @@ import java.util.List; import java.util.Map; import java.util.Set; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.exceptions.TransactionException; import org.eclipse.jetty.util.ajax.JSON; import org.jdom2.DataConversionException; import org.jdom2.Document; diff --git a/src/main/java/caosdb/server/permissions/EntityACLFactory.java b/src/main/java/org/caosdb/server/permissions/EntityACLFactory.java similarity index 85% rename from src/main/java/caosdb/server/permissions/EntityACLFactory.java rename to src/main/java/org/caosdb/server/permissions/EntityACLFactory.java index eeacb1260729f78f490e592891c0a93a334b42fa..08e4ae45cf07baac91b98205c1098d823b878b21 100644 --- a/src/main/java/caosdb/server/permissions/EntityACLFactory.java +++ b/src/main/java/org/caosdb/server/permissions/EntityACLFactory.java @@ -1,4 +1,4 @@ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import java.util.Collection; diff --git a/src/main/java/caosdb/server/permissions/EntityPermission.java b/src/main/java/org/caosdb/server/permissions/EntityPermission.java similarity index 98% rename from src/main/java/caosdb/server/permissions/EntityPermission.java rename to src/main/java/org/caosdb/server/permissions/EntityPermission.java index 1747a55810cf9718abc9627cad8102f88b2a5cac..3a17db989196bfab516f8ea66654d1d6696f5150 100644 --- a/src/main/java/caosdb/server/permissions/EntityPermission.java +++ b/src/main/java/org/caosdb/server/permissions/EntityPermission.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; -import caosdb.server.CaosDBException; -import caosdb.server.entity.xml.ToElementable; import java.util.ArrayList; import java.util.HashSet; import java.util.List; import java.util.Set; import java.util.regex.Matcher; import java.util.regex.Pattern; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.entity.xml.ToElementable; import org.jdom2.Element; public class EntityPermission extends Permission { diff --git a/src/main/java/caosdb/server/permissions/Permission.java b/src/main/java/org/caosdb/server/permissions/Permission.java similarity index 97% rename from src/main/java/caosdb/server/permissions/Permission.java rename to src/main/java/org/caosdb/server/permissions/Permission.java index e58329ee38e45c9bc053ca5cc60b258838116271..02c304199cc15063deb95bc2bfa105b9445a0890 100644 --- a/src/main/java/caosdb/server/permissions/Permission.java +++ b/src/main/java/org/caosdb/server/permissions/Permission.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import org.apache.shiro.authz.permission.WildcardPermission; diff --git a/src/main/java/caosdb/server/permissions/PermissionRule.java b/src/main/java/org/caosdb/server/permissions/PermissionRule.java similarity index 98% rename from src/main/java/caosdb/server/permissions/PermissionRule.java rename to src/main/java/org/caosdb/server/permissions/PermissionRule.java index bcbd3a27abb6781613f2afef450b2ce2eed24feb..b6ee915156771e1164f3a0ee221d3e14ab964833 100644 --- a/src/main/java/caosdb/server/permissions/PermissionRule.java +++ b/src/main/java/org/caosdb/server/permissions/PermissionRule.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import java.util.HashMap; import java.util.Map; diff --git a/src/main/java/caosdb/server/permissions/ResponsibleAgent.java b/src/main/java/org/caosdb/server/permissions/ResponsibleAgent.java similarity index 96% rename from src/main/java/caosdb/server/permissions/ResponsibleAgent.java rename to src/main/java/org/caosdb/server/permissions/ResponsibleAgent.java index b29675ecd16f6872e2aa03ba5e70c8e5699cd613..3f8fd3bbbe800b1ce43d240da53344512feb5e01 100644 --- a/src/main/java/caosdb/server/permissions/ResponsibleAgent.java +++ b/src/main/java/org/caosdb/server/permissions/ResponsibleAgent.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import java.util.HashMap; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/permissions/Role.java b/src/main/java/org/caosdb/server/permissions/Role.java similarity index 98% rename from src/main/java/caosdb/server/permissions/Role.java rename to src/main/java/org/caosdb/server/permissions/Role.java index 87b5d2474c4d2d3f13fd2787aaf5b11a1245a39c..54afefc664c330dfc4465285347a1463d9df0d5e 100644 --- a/src/main/java/caosdb/server/permissions/Role.java +++ b/src/main/java/org/caosdb/server/permissions/Role.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import java.util.HashMap; import org.jdom2.Attribute; diff --git a/src/main/java/caosdb/server/query/Backreference.java b/src/main/java/org/caosdb/server/query/Backreference.java similarity index 96% rename from src/main/java/caosdb/server/query/Backreference.java rename to src/main/java/org/caosdb/server/query/Backreference.java index c39ce43923372811caf8607550a9852d1a518c63..5f8105c823a231a14853e1db370649c7a7189649 100644 --- a/src/main/java/caosdb/server/query/Backreference.java +++ b/src/main/java/org/caosdb/server/query/Backreference.java @@ -20,15 +20,11 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; import static java.sql.Types.VARCHAR; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.database.access.Access; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.query.Query.Pattern; -import caosdb.server.query.Query.QueryException; import java.sql.CallableStatement; import java.sql.Connection; import java.sql.PreparedStatement; @@ -38,6 +34,10 @@ import java.sql.Types; import java.util.HashMap; import java.util.Map.Entry; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.query.Query.Pattern; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class Backreference implements EntityFilterInterface, QueryInterface { diff --git a/src/main/java/caosdb/server/query/CQLLexer.g4 b/src/main/java/org/caosdb/server/query/CQLLexer.g4 similarity index 100% rename from src/main/java/caosdb/server/query/CQLLexer.g4 rename to src/main/java/org/caosdb/server/query/CQLLexer.g4 diff --git a/src/main/java/caosdb/server/query/CQLParser.g4 b/src/main/java/org/caosdb/server/query/CQLParser.g4 similarity index 100% rename from src/main/java/caosdb/server/query/CQLParser.g4 rename to src/main/java/org/caosdb/server/query/CQLParser.g4 diff --git a/src/main/java/caosdb/server/query/CQLParsingErrorListener.java b/src/main/java/org/caosdb/server/query/CQLParsingErrorListener.java similarity index 99% rename from src/main/java/caosdb/server/query/CQLParsingErrorListener.java rename to src/main/java/org/caosdb/server/query/CQLParsingErrorListener.java index 5dcec8eb2cd1772978aca87e3b630ee34d0e6812..c2b453e5836a18628904302f2157f0a41a190068 100644 --- a/src/main/java/caosdb/server/query/CQLParsingErrorListener.java +++ b/src/main/java/org/caosdb/server/query/CQLParsingErrorListener.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; import java.util.ArrayList; import java.util.BitSet; diff --git a/src/main/java/caosdb/server/query/Conjunction.java b/src/main/java/org/caosdb/server/query/Conjunction.java similarity index 95% rename from src/main/java/caosdb/server/query/Conjunction.java rename to src/main/java/org/caosdb/server/query/Conjunction.java index 297f781bdc0de1ecf6de69ade12c25cba5efc8c9..a8fd9cd16296dfdf846bd81d2c25676537cd590c 100644 --- a/src/main/java/caosdb/server/query/Conjunction.java +++ b/src/main/java/org/caosdb/server/query/Conjunction.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.database.access.Access; -import caosdb.server.query.Query.QueryException; import java.sql.CallableStatement; import java.sql.Connection; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class Conjunction extends EntityFilterContainer implements QueryInterface { diff --git a/src/main/java/caosdb/server/query/Disjunction.java b/src/main/java/org/caosdb/server/query/Disjunction.java similarity index 95% rename from src/main/java/caosdb/server/query/Disjunction.java rename to src/main/java/org/caosdb/server/query/Disjunction.java index b9515c6b2ea263090ca224c8de3a625167666090..3bd2f32fdd3bfb64ad2a07c527b91136e965c22b 100644 --- a/src/main/java/caosdb/server/query/Disjunction.java +++ b/src/main/java/org/caosdb/server/query/Disjunction.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.database.access.Access; -import caosdb.server.query.Query.QueryException; import java.sql.CallableStatement; import java.sql.Connection; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class Disjunction extends EntityFilterContainer implements QueryInterface { diff --git a/src/main/java/caosdb/server/query/EntityFilterContainer.java b/src/main/java/org/caosdb/server/query/EntityFilterContainer.java similarity index 97% rename from src/main/java/caosdb/server/query/EntityFilterContainer.java rename to src/main/java/org/caosdb/server/query/EntityFilterContainer.java index 712ed7182cf681c6d4f0a465e94e0c6161b290e6..c2409f90ecc43cfb318a17cc8a9f3ba6df60beb0 100644 --- a/src/main/java/caosdb/server/query/EntityFilterContainer.java +++ b/src/main/java/org/caosdb/server/query/EntityFilterContainer.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; import java.util.LinkedList; diff --git a/src/main/java/caosdb/server/query/EntityFilterInterface.java b/src/main/java/org/caosdb/server/query/EntityFilterInterface.java similarity index 92% rename from src/main/java/caosdb/server/query/EntityFilterInterface.java rename to src/main/java/org/caosdb/server/query/EntityFilterInterface.java index 813f3ef00e780128fcc457dd34895441b1700cb5..3bf113edbfa6aeb3bbe1c4ead7c2bbca0aca0d03 100644 --- a/src/main/java/caosdb/server/query/EntityFilterInterface.java +++ b/src/main/java/org/caosdb/server/query/EntityFilterInterface.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import caosdb.server.query.Query.QueryException; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public interface EntityFilterInterface { diff --git a/src/main/java/caosdb/server/query/IDFilter.java b/src/main/java/org/caosdb/server/query/IDFilter.java similarity index 97% rename from src/main/java/caosdb/server/query/IDFilter.java rename to src/main/java/org/caosdb/server/query/IDFilter.java index 556ba1c0ef64a73518cfea957c5ab5d1401a47eb..26054bb16f0eb39a581a4fa0da6c62a67c6fc385 100644 --- a/src/main/java/caosdb/server/query/IDFilter.java +++ b/src/main/java/org/caosdb/server/query/IDFilter.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; import static java.sql.Types.CHAR; import static java.sql.Types.INTEGER; import static java.sql.Types.VARCHAR; -import caosdb.server.query.Query.QueryException; import java.sql.CallableStatement; import java.sql.Connection; import java.sql.SQLException; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class IDFilter implements EntityFilterInterface { diff --git a/src/main/java/caosdb/server/query/Negation.java b/src/main/java/org/caosdb/server/query/Negation.java similarity index 96% rename from src/main/java/caosdb/server/query/Negation.java rename to src/main/java/org/caosdb/server/query/Negation.java index c54d4b8f931c4ba21622db7b35bdd00c33d86334..d4243580bf52511d05699c7c80e69015ea2a0dac 100644 --- a/src/main/java/caosdb/server/query/Negation.java +++ b/src/main/java/org/caosdb/server/query/Negation.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.database.access.Access; -import caosdb.server.query.Query.QueryException; import java.sql.CallableStatement; import java.sql.Connection; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class Negation implements EntityFilterInterface, QueryInterface { diff --git a/src/main/java/caosdb/server/query/POV.java b/src/main/java/org/caosdb/server/query/POV.java similarity index 97% rename from src/main/java/caosdb/server/query/POV.java rename to src/main/java/org/caosdb/server/query/POV.java index 924c1293bfea78ef15f1b6ab10e5d9d91a2a98cc..03b603d0df70d1159c1d78f1626e23faab40e033 100644 --- a/src/main/java/caosdb/server/query/POV.java +++ b/src/main/java/org/caosdb/server/query/POV.java @@ -20,20 +20,13 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; import static java.sql.Types.DOUBLE; import static java.sql.Types.INTEGER; import static java.sql.Types.VARCHAR; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.datetime.DateTimeFactory2; -import caosdb.datetime.DateTimeInterface; -import caosdb.datetime.Interval; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.query.Query.QueryException; -import caosdb.unit.CaosDBSystemOfUnits; -import caosdb.unit.Unit; import de.timmfitschen.easyunits.parser.ParserException; import java.sql.CallableStatement; import java.sql.Connection; @@ -46,6 +39,13 @@ import java.util.Map.Entry; import java.util.Stack; import java.util.regex.Matcher; import java.util.regex.Pattern; +import org.caosdb.datetime.DateTimeFactory2; +import org.caosdb.datetime.DateTimeInterface; +import org.caosdb.datetime.Interval; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.query.Query.QueryException; +import org.caosdb.unit.CaosDBSystemOfUnits; +import org.caosdb.unit.Unit; import org.jdom2.Element; import org.slf4j.Logger; import org.slf4j.LoggerFactory; diff --git a/src/main/java/caosdb/server/query/Query.java b/src/main/java/org/caosdb/server/query/Query.java similarity index 94% rename from src/main/java/caosdb/server/query/Query.java rename to src/main/java/org/caosdb/server/query/Query.java index a2d6e48767f5835bd9bf40ce65717bf9e8363f98..c111a3a9d7771a96ae781a6c1330c491bfe7c4dc 100644 --- a/src/main/java/caosdb/server/query/Query.java +++ b/src/main/java/org/caosdb/server/query/Query.java @@ -20,31 +20,10 @@ * * ** end header */ -package caosdb.server.query; - -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; - -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.database.backend.implementation.MySQL.MySQLHelper; -import caosdb.server.database.backend.transaction.RetrieveSparseEntity; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.misc.DBHelper; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.entity.RetrieveEntity; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.permissions.EntityACL; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.query.CQLParser.CqContext; -import caosdb.server.query.CQLParsingErrorListener.ParsingError; -import caosdb.server.transaction.TransactionInterface; +package org.caosdb.server.query; + +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; + import java.sql.CallableStatement; import java.sql.Connection; import java.sql.PreparedStatement; @@ -62,6 +41,27 @@ import java.util.Map.Entry; import org.antlr.v4.runtime.CharStreams; import org.antlr.v4.runtime.CommonTokenStream; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.database.backend.implementation.MySQL.MySQLHelper; +import org.caosdb.server.database.backend.transaction.RetrieveSparseEntity; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.misc.DBHelper; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.entity.RetrieveEntity; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.permissions.EntityACL; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.query.CQLParser.CqContext; +import org.caosdb.server.query.CQLParsingErrorListener.ParsingError; +import org.caosdb.server.transaction.TransactionInterface; import org.jdom2.Element; public class Query implements QueryInterface, ToElementable, TransactionInterface { diff --git a/src/main/java/caosdb/server/query/QueryInterface.java b/src/main/java/org/caosdb/server/query/QueryInterface.java similarity index 94% rename from src/main/java/caosdb/server/query/QueryInterface.java rename to src/main/java/org/caosdb/server/query/QueryInterface.java index d42243ba2de45e7d369b733f6d1fbe26bce45fbd..32cc1c7d8d98b56f80b159fc3f0004a491773563 100644 --- a/src/main/java/caosdb/server/query/QueryInterface.java +++ b/src/main/java/org/caosdb/server/query/QueryInterface.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import caosdb.server.database.access.Access; import java.sql.Connection; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.access.Access; public interface QueryInterface { diff --git a/src/main/java/caosdb/server/query/RoleFilter.java b/src/main/java/org/caosdb/server/query/RoleFilter.java similarity index 97% rename from src/main/java/caosdb/server/query/RoleFilter.java rename to src/main/java/org/caosdb/server/query/RoleFilter.java index 97f73114a4bba08829046c81d77f964aee3ecaa9..9055dccb358dd94ec17dee8b26bac97d2170b016 100644 --- a/src/main/java/caosdb/server/query/RoleFilter.java +++ b/src/main/java/org/caosdb/server/query/RoleFilter.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import caosdb.server.query.Query.QueryException; -import caosdb.server.query.Query.Role; import java.sql.Connection; import java.sql.PreparedStatement; import java.sql.SQLException; +import org.caosdb.server.query.Query.QueryException; +import org.caosdb.server.query.Query.Role; import org.jdom2.Element; public class RoleFilter implements EntityFilterInterface { diff --git a/src/main/java/caosdb/server/query/StoredAt.java b/src/main/java/org/caosdb/server/query/StoredAt.java similarity index 98% rename from src/main/java/caosdb/server/query/StoredAt.java rename to src/main/java/org/caosdb/server/query/StoredAt.java index b16bb83f2f95c4da1f86292a7d0f17e73f8150d4..84a12d2c6b5b7ca3c3b0644eef4ea72a200cc328 100644 --- a/src/main/java/caosdb/server/query/StoredAt.java +++ b/src/main/java/org/caosdb/server/query/StoredAt.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; import static java.sql.Types.VARCHAR; -import caosdb.server.query.Query.QueryException; import java.nio.file.Path; import java.nio.file.Paths; import java.sql.CallableStatement; import java.sql.SQLException; import java.util.regex.Matcher; import java.util.regex.Pattern; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class StoredAt implements EntityFilterInterface { diff --git a/src/main/java/caosdb/server/query/SubProperty.java b/src/main/java/org/caosdb/server/query/SubProperty.java similarity index 95% rename from src/main/java/caosdb/server/query/SubProperty.java rename to src/main/java/org/caosdb/server/query/SubProperty.java index 12629640ec4e7780c1b1d5933e7d6e1711f635f7..f8c22367c70f623903a3ee2f14a0af3cbbefd128 100644 --- a/src/main/java/caosdb/server/query/SubProperty.java +++ b/src/main/java/org/caosdb/server/query/SubProperty.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; -import static caosdb.server.database.DatabaseUtils.bytes2UTF8; import static java.sql.Types.VARCHAR; +import static org.caosdb.server.database.DatabaseUtils.bytes2UTF8; -import caosdb.server.database.access.Access; -import caosdb.server.query.Query.QueryException; import java.sql.CallableStatement; import java.sql.Connection; import java.sql.ResultSet; import java.sql.SQLException; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class SubProperty implements QueryInterface, EntityFilterInterface { diff --git a/src/main/java/caosdb/server/query/TransactionFilter.java b/src/main/java/org/caosdb/server/query/TransactionFilter.java similarity index 95% rename from src/main/java/caosdb/server/query/TransactionFilter.java rename to src/main/java/org/caosdb/server/query/TransactionFilter.java index 3f4af80ee8eb2f484f23d1ace2f8f1a24e7909d6..55176594f5d17fdb726b82f37e5d3eb83944e611 100644 --- a/src/main/java/caosdb/server/query/TransactionFilter.java +++ b/src/main/java/org/caosdb/server/query/TransactionFilter.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.server.query; - -import caosdb.datetime.Date; -import caosdb.datetime.DateTimeFactory2; -import caosdb.datetime.Interval; -import caosdb.datetime.SemiCompleteDateTime; -import caosdb.datetime.UTCDateTime; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.UserSources; -import caosdb.server.query.Query.QueryException; +package org.caosdb.server.query; + import java.sql.CallableStatement; import java.sql.Connection; import java.sql.SQLException; import java.sql.Types; +import org.caosdb.datetime.Date; +import org.caosdb.datetime.DateTimeFactory2; +import org.caosdb.datetime.Interval; +import org.caosdb.datetime.SemiCompleteDateTime; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.query.Query.QueryException; import org.jdom2.Element; public class TransactionFilter implements EntityFilterInterface { diff --git a/src/main/java/caosdb/server/query/Utils.java b/src/main/java/org/caosdb/server/query/Utils.java similarity index 98% rename from src/main/java/caosdb/server/query/Utils.java rename to src/main/java/org/caosdb/server/query/Utils.java index 5c1c74345f989958053ca069dd4d206a3429e5d2..661cee12585d8f4b07ca3a9fea364943aa1d9c6b 100644 --- a/src/main/java/caosdb/server/query/Utils.java +++ b/src/main/java/org/caosdb/server/query/Utils.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; import java.io.PrintStream; import java.sql.Connection; diff --git a/src/main/java/caosdb/server/resource/AbstractCaosDBServerResource.java b/src/main/java/org/caosdb/server/resource/AbstractCaosDBServerResource.java similarity index 97% rename from src/main/java/caosdb/server/resource/AbstractCaosDBServerResource.java rename to src/main/java/org/caosdb/server/resource/AbstractCaosDBServerResource.java index 97488a6ba2a7984d66bb94332b4d7df0f9478cfb..1460eecde3283f0aab3f4e473ff35cd4d1096b54 100644 --- a/src/main/java/caosdb/server/resource/AbstractCaosDBServerResource.java +++ b/src/main/java/org/caosdb/server/resource/AbstractCaosDBServerResource.java @@ -22,17 +22,10 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; import static java.net.URLDecoder.decode; -import caosdb.server.CaosDBException; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.WebinterfaceUtils; import java.io.IOException; import java.io.InputStream; import java.io.UnsupportedEncodingException; @@ -48,6 +41,13 @@ import org.apache.shiro.SecurityUtils; import org.apache.shiro.authc.AuthenticationException; import org.apache.shiro.authz.AuthorizationException; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.WebinterfaceUtils; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.JDOMException; diff --git a/src/main/java/caosdb/server/resource/AuthenticationResource.java b/src/main/java/org/caosdb/server/resource/AuthenticationResource.java similarity index 90% rename from src/main/java/caosdb/server/resource/AuthenticationResource.java rename to src/main/java/org/caosdb/server/resource/AuthenticationResource.java index d3b49580cf1a86347398ef7d36f6021f710e7da3..ed60d7906b1cda003ed2a84f0e22200049d96c25 100644 --- a/src/main/java/caosdb/server/resource/AuthenticationResource.java +++ b/src/main/java/org/caosdb/server/resource/AuthenticationResource.java @@ -20,16 +20,8 @@ * * ** end header */ -package caosdb.server.resource; - -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.accessControl.RealmUsernamePasswordToken; -import caosdb.server.accessControl.UserSources; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.resource; + import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; @@ -39,6 +31,14 @@ import org.apache.shiro.authc.AccountException; import org.apache.shiro.authc.AuthenticationException; import org.apache.shiro.authc.CredentialsException; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.accessControl.RealmUsernamePasswordToken; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.JDOMException; diff --git a/src/main/java/caosdb/server/resource/DefaultResource.java b/src/main/java/org/caosdb/server/resource/DefaultResource.java similarity index 91% rename from src/main/java/caosdb/server/resource/DefaultResource.java rename to src/main/java/org/caosdb/server/resource/DefaultResource.java index e26171f04fa24cea607288c2ee37ba713d47234f..488cd667c8832e4b90277e07144c65cbb7e4036d 100644 --- a/src/main/java/caosdb/server/resource/DefaultResource.java +++ b/src/main/java/org/caosdb/server/resource/DefaultResource.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBException; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; import org.jdom2.Document; import org.jdom2.Element; import org.restlet.representation.Representation; diff --git a/src/main/java/caosdb/server/resource/EntityOwnerResource.java b/src/main/java/org/caosdb/server/resource/EntityOwnerResource.java similarity index 79% rename from src/main/java/caosdb/server/resource/EntityOwnerResource.java rename to src/main/java/org/caosdb/server/resource/EntityOwnerResource.java index 5841eeb541be111720379008c5144ef82c6b9a01..f20a4ab042bd996ef7e7d004e9246935cf034b64 100644 --- a/src/main/java/caosdb/server/resource/EntityOwnerResource.java +++ b/src/main/java/org/caosdb/server/resource/EntityOwnerResource.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.resource.transaction.EntityResource; -import caosdb.server.resource.transaction.handlers.RequestHandler; -import caosdb.server.resource.transaction.handlers.RetriveOwnerRequestHandler; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.resource.transaction.handlers.RequestHandler; +import org.caosdb.server.resource.transaction.handlers.RetriveOwnerRequestHandler; public class EntityOwnerResource extends EntityResource { diff --git a/src/main/java/caosdb/server/resource/EntityPermissionsResource.java b/src/main/java/org/caosdb/server/resource/EntityPermissionsResource.java similarity index 78% rename from src/main/java/caosdb/server/resource/EntityPermissionsResource.java rename to src/main/java/org/caosdb/server/resource/EntityPermissionsResource.java index b29d6c5eab1a21e8e86a56fbc3c806c97c426769..ffce6fe18378ec2586276cd69124cfaeaf8f29fc 100644 --- a/src/main/java/caosdb/server/resource/EntityPermissionsResource.java +++ b/src/main/java/org/caosdb/server/resource/EntityPermissionsResource.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.resource.transaction.EntityResource; -import caosdb.server.resource.transaction.handlers.RequestHandler; -import caosdb.server.resource.transaction.handlers.RetrieveGlobalEntityPermissionsHandler; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.resource.transaction.handlers.RequestHandler; +import org.caosdb.server.resource.transaction.handlers.RetrieveGlobalEntityPermissionsHandler; public class EntityPermissionsResource extends EntityResource { diff --git a/src/main/java/caosdb/server/resource/FileSystemResource.java b/src/main/java/org/caosdb/server/resource/FileSystemResource.java similarity index 89% rename from src/main/java/caosdb/server/resource/FileSystemResource.java rename to src/main/java/org/caosdb/server/resource/FileSystemResource.java index ef352e19eb178c5cefbdbd70d2e48b3231ac7bd7..f09f97eab5fbb1ea49930bc8cae227cb2b5fba05 100644 --- a/src/main/java/caosdb/server/resource/FileSystemResource.java +++ b/src/main/java/org/caosdb/server/resource/FileSystemResource.java @@ -20,27 +20,27 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import static caosdb.server.FileSystem.getFromFileSystem; import static java.net.URLDecoder.decode; +import static org.caosdb.server.FileSystem.getFromFileSystem; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.entity.Entity; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.entity.RetrieveEntity; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.transaction.RetrieveSparseEntityByPath; -import caosdb.server.transaction.Transaction; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.ServerMessages; import java.io.File; import java.io.IOException; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.entity.RetrieveEntity; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.transaction.RetrieveSparseEntityByPath; +import org.caosdb.server.transaction.Transaction; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Attribute; import org.jdom2.Document; import org.jdom2.Element; diff --git a/src/main/java/caosdb/server/resource/InfoResource.java b/src/main/java/org/caosdb/server/resource/InfoResource.java similarity index 88% rename from src/main/java/caosdb/server/resource/InfoResource.java rename to src/main/java/org/caosdb/server/resource/InfoResource.java index 4beb9757cff83696a546eb174fbb0f21453029b7..25e8842b40df2d64c3dd628116ad958eb45bdb11 100644 --- a/src/main/java/caosdb/server/resource/InfoResource.java +++ b/src/main/java/org/caosdb/server/resource/InfoResource.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.datetime.UTCTimeZoneShift; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.utils.FlagInfo; -import caosdb.server.utils.Info; import java.util.TimeZone; +import org.caosdb.datetime.UTCTimeZoneShift; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.utils.FlagInfo; +import org.caosdb.server.utils.Info; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.JDOMException; diff --git a/src/main/java/caosdb/server/resource/JdomRepresentation.java b/src/main/java/org/caosdb/server/resource/JdomRepresentation.java similarity index 97% rename from src/main/java/caosdb/server/resource/JdomRepresentation.java rename to src/main/java/org/caosdb/server/resource/JdomRepresentation.java index 04fbdac3fdd13f9e5c4f025cb2364386deac71f0..1af634b0ae784ccaf4aff4aac399771cb4774f60 100644 --- a/src/main/java/caosdb/server/resource/JdomRepresentation.java +++ b/src/main/java/org/caosdb/server/resource/JdomRepresentation.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import java.io.IOException; import java.io.OutputStream; import java.io.Writer; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; import org.jdom2.Document; import org.jdom2.ProcessingInstruction; import org.jdom2.output.Format; diff --git a/src/main/java/caosdb/server/resource/LogoutResource.java b/src/main/java/org/caosdb/server/resource/LogoutResource.java similarity index 89% rename from src/main/java/caosdb/server/resource/LogoutResource.java rename to src/main/java/org/caosdb/server/resource/LogoutResource.java index 79489413d163d38c669f2cb7f04c5d437b2f11c5..1659f751a4710fbf99fc473b586cc3b180c8a62c 100644 --- a/src/main/java/caosdb/server/resource/LogoutResource.java +++ b/src/main/java/org/caosdb/server/resource/LogoutResource.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBException; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; import org.restlet.representation.Representation; public class LogoutResource extends AuthenticationResource { diff --git a/src/main/java/caosdb/server/resource/PermissionRulesResource.java b/src/main/java/org/caosdb/server/resource/PermissionRulesResource.java similarity index 86% rename from src/main/java/caosdb/server/resource/PermissionRulesResource.java rename to src/main/java/org/caosdb/server/resource/PermissionRulesResource.java index dba1797a03287c503e5898c7e9a7dde6c389630c..8d2aa1720aaefcdbaccee18c6a1626a912319b6a 100644 --- a/src/main/java/caosdb/server/resource/PermissionRulesResource.java +++ b/src/main/java/org/caosdb/server/resource/PermissionRulesResource.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBException; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.entity.Message; -import caosdb.server.permissions.PermissionRule; -import caosdb.server.transaction.RetrievePermissionRulesTransaction; -import caosdb.server.transaction.UpdatePermissionRulesTransaction; -import caosdb.server.utils.ServerMessages; import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; import java.util.HashSet; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.permissions.PermissionRule; +import org.caosdb.server.transaction.RetrievePermissionRulesTransaction; +import org.caosdb.server.transaction.UpdatePermissionRulesTransaction; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Document; import org.jdom2.Element; import org.restlet.data.Status; diff --git a/src/main/java/caosdb/server/resource/ReReadableRepresentation.java b/src/main/java/org/caosdb/server/resource/ReReadableRepresentation.java similarity index 99% rename from src/main/java/caosdb/server/resource/ReReadableRepresentation.java rename to src/main/java/org/caosdb/server/resource/ReReadableRepresentation.java index df5f7e55b0734877ad6f32dbc553d2a570685a34..3620eef2167073f479c9df63c415e01857db3ea1 100644 --- a/src/main/java/caosdb/server/resource/ReReadableRepresentation.java +++ b/src/main/java/org/caosdb/server/resource/ReReadableRepresentation.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; import com.google.common.base.Charsets; import java.io.IOException; diff --git a/src/main/java/caosdb/server/resource/RolesResource.java b/src/main/java/org/caosdb/server/resource/RolesResource.java similarity index 89% rename from src/main/java/caosdb/server/resource/RolesResource.java rename to src/main/java/org/caosdb/server/resource/RolesResource.java index 0f1b01e3230cf3e73f1c20949f38e180bd8f7e3b..a89a731950d09a7edbce0a5f67a3e81287c07b2a 100644 --- a/src/main/java/caosdb/server/resource/RolesResource.java +++ b/src/main/java/org/caosdb/server/resource/RolesResource.java @@ -20,21 +20,21 @@ * * ** end header */ -package caosdb.server.resource; - -import caosdb.server.CaosDBException; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.Role; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.entity.Message; -import caosdb.server.transaction.DeleteRoleTransaction; -import caosdb.server.transaction.InsertRoleTransaction; -import caosdb.server.transaction.RetrieveRoleTransaction; -import caosdb.server.transaction.UpdateRoleTransaction; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.resource; + import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.transaction.DeleteRoleTransaction; +import org.caosdb.server.transaction.InsertRoleTransaction; +import org.caosdb.server.transaction.RetrieveRoleTransaction; +import org.caosdb.server.transaction.UpdateRoleTransaction; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.JDOMException; diff --git a/src/main/java/caosdb/server/resource/ScriptingResource.java b/src/main/java/org/caosdb/server/resource/ScriptingResource.java similarity index 92% rename from src/main/java/caosdb/server/resource/ScriptingResource.java rename to src/main/java/org/caosdb/server/resource/ScriptingResource.java index cb652b862282e2cf804ae4cbffd3b6f9de9d109f..35885bb4376b26fc04977389f4dbf1cd7c40decd 100644 --- a/src/main/java/caosdb/server/resource/ScriptingResource.java +++ b/src/main/java/org/caosdb/server/resource/ScriptingResource.java @@ -22,20 +22,8 @@ * ** end header */ -package caosdb.server.resource; - -import caosdb.server.FileSystem; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.accessControl.OneTimeAuthenticationToken; -import caosdb.server.accessControl.SessionToken; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.scripting.CallerSerializer; -import caosdb.server.scripting.ScriptingPermissions; -import caosdb.server.scripting.ServerSideScriptingCaller; -import caosdb.server.utils.Serializer; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.Utils; +package org.caosdb.server.resource; + import com.ibm.icu.text.Collator; import java.io.IOException; import java.security.NoSuchAlgorithmException; @@ -50,6 +38,18 @@ import org.apache.commons.fileupload.FileItemStream; import org.apache.commons.fileupload.FileUploadException; import org.apache.commons.fileupload.disk.DiskFileItemFactory; import org.apache.shiro.subject.Subject; +import org.caosdb.server.FileSystem; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.accessControl.OneTimeAuthenticationToken; +import org.caosdb.server.accessControl.SessionToken; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.scripting.CallerSerializer; +import org.caosdb.server.scripting.ScriptingPermissions; +import org.caosdb.server.scripting.ServerSideScriptingCaller; +import org.caosdb.server.utils.Serializer; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.Utils; import org.jdom2.Element; import org.restlet.data.CharacterSet; import org.restlet.data.Form; diff --git a/src/main/java/caosdb/server/resource/ServerLogsResource.java b/src/main/java/org/caosdb/server/resource/ServerLogsResource.java similarity index 91% rename from src/main/java/caosdb/server/resource/ServerLogsResource.java rename to src/main/java/org/caosdb/server/resource/ServerLogsResource.java index b63de6e0f7fd0d95dd315db47fe6a6c88833f648..f304f10062209d62855a0bff21e0c8cad54e1962 100644 --- a/src/main/java/caosdb/server/resource/ServerLogsResource.java +++ b/src/main/java/org/caosdb/server/resource/ServerLogsResource.java @@ -20,11 +20,8 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBException; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.transaction.RetrieveLogRecordTransaction; import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; @@ -32,6 +29,9 @@ import java.util.List; import java.util.logging.Level; import java.util.logging.LogRecord; import java.util.logging.XMLFormatter; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.transaction.RetrieveLogRecordTransaction; import org.restlet.data.Form; import org.restlet.data.MediaType; import org.restlet.representation.Representation; diff --git a/src/main/java/caosdb/server/resource/ServerPropertiesResource.java b/src/main/java/org/caosdb/server/resource/ServerPropertiesResource.java similarity index 87% rename from src/main/java/caosdb/server/resource/ServerPropertiesResource.java rename to src/main/java/org/caosdb/server/resource/ServerPropertiesResource.java index 347919d9c7d0f604734790f2ea09b5e2bac54042..5b4e83162ab2e2a701a8497eeb85225def94cff1 100644 --- a/src/main/java/caosdb/server/resource/ServerPropertiesResource.java +++ b/src/main/java/org/caosdb/server/resource/ServerPropertiesResource.java @@ -1,8 +1,8 @@ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerPropertiesSerializer; -import caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerPropertiesSerializer; +import org.caosdb.server.accessControl.ACMPermissions; import org.restlet.data.Form; import org.restlet.data.Parameter; import org.restlet.data.Status; diff --git a/src/main/java/caosdb/server/resource/SharedFileResource.java b/src/main/java/org/caosdb/server/resource/SharedFileResource.java similarity index 92% rename from src/main/java/caosdb/server/resource/SharedFileResource.java rename to src/main/java/org/caosdb/server/resource/SharedFileResource.java index 71cf089ddc4246196b8299502b1f15969183f372..971dff6901e771cce13dac87d1d0a1ac30dde83e 100644 --- a/src/main/java/caosdb/server/resource/SharedFileResource.java +++ b/src/main/java/org/caosdb/server/resource/SharedFileResource.java @@ -22,16 +22,16 @@ * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; import static java.net.URLDecoder.decode; -import caosdb.server.FileSystem; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.utils.FileUtils; -import caosdb.server.utils.ServerMessages; import java.io.File; import java.io.IOException; +import org.caosdb.server.FileSystem; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.utils.FileUtils; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.JDOMException; import org.restlet.data.Disposition; import org.restlet.data.MediaType; diff --git a/src/main/java/caosdb/server/resource/ThumbnailsResource.java b/src/main/java/org/caosdb/server/resource/ThumbnailsResource.java similarity index 93% rename from src/main/java/caosdb/server/resource/ThumbnailsResource.java rename to src/main/java/org/caosdb/server/resource/ThumbnailsResource.java index e08378c5a4e766f8f84d9d383207e461868bc422..c74251a1c31b2b3ec13bb72618b9c53d222e0cdf 100644 --- a/src/main/java/caosdb/server/resource/ThumbnailsResource.java +++ b/src/main/java/org/caosdb/server/resource/ThumbnailsResource.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import static caosdb.server.FileSystem.getFromFileSystem; +import static org.caosdb.server.FileSystem.getFromFileSystem; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.utils.ServerMessages; import java.io.File; import java.io.IOException; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.JDOMException; import org.restlet.data.Disposition; import org.restlet.data.MediaType; diff --git a/src/main/java/caosdb/server/resource/UserResource.java b/src/main/java/org/caosdb/server/resource/UserResource.java similarity index 90% rename from src/main/java/caosdb/server/resource/UserResource.java rename to src/main/java/org/caosdb/server/resource/UserResource.java index 7dc9111ee332421fd27d1c32632cc458cbf6c800..8ac0df1d8f8f018a07251e35a118ae944224dcc3 100644 --- a/src/main/java/caosdb/server/resource/UserResource.java +++ b/src/main/java/org/caosdb/server/resource/UserResource.java @@ -20,24 +20,24 @@ * * ** end header */ -package caosdb.server.resource; - -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.UserSources; -import caosdb.server.accessControl.UserStatus; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.entity.Message; -import caosdb.server.transaction.DeleteUserTransaction; -import caosdb.server.transaction.InsertUserTransaction; -import caosdb.server.transaction.RetrieveUserTransaction; -import caosdb.server.transaction.UpdateUserTransaction; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.resource; + import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.accessControl.UserStatus; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.transaction.DeleteUserTransaction; +import org.caosdb.server.transaction.InsertUserTransaction; +import org.caosdb.server.transaction.RetrieveUserTransaction; +import org.caosdb.server.transaction.UpdateUserTransaction; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.JDOMException; diff --git a/src/main/java/caosdb/server/resource/UserRolesResource.java b/src/main/java/org/caosdb/server/resource/UserRolesResource.java similarity index 88% rename from src/main/java/caosdb/server/resource/UserRolesResource.java rename to src/main/java/org/caosdb/server/resource/UserRolesResource.java index 46d51ca4d60bec89b584cefc362e54ab37063503..4eb7f6143038bb6e4b0c3fda4646e2730acfea04 100644 --- a/src/main/java/caosdb/server/resource/UserRolesResource.java +++ b/src/main/java/org/caosdb/server/resource/UserRolesResource.java @@ -20,21 +20,21 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBException; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.UserSources; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.entity.Message; -import caosdb.server.transaction.RetrieveUserRolesTransaction; -import caosdb.server.transaction.UpdateUserRolesTransaction; -import caosdb.server.utils.ServerMessages; import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; import java.util.HashSet; import java.util.List; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.entity.Message; +import org.caosdb.server.transaction.RetrieveUserRolesTransaction; +import org.caosdb.server.transaction.UpdateUserRolesTransaction; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.JDOMException; diff --git a/src/main/java/caosdb/server/resource/Webinterface.java b/src/main/java/org/caosdb/server/resource/Webinterface.java similarity index 95% rename from src/main/java/caosdb/server/resource/Webinterface.java rename to src/main/java/org/caosdb/server/resource/Webinterface.java index f05ae4e6b9a98aba1c925677e0fc8e90a74e57e6..bba1fb09c7f2c0a14b95b7314832b6ff174cef6b 100644 --- a/src/main/java/caosdb/server/resource/Webinterface.java +++ b/src/main/java/org/caosdb/server/resource/Webinterface.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.utils.WebinterfaceUtils; import java.io.File; import java.io.IOException; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.utils.WebinterfaceUtils; import org.restlet.data.CacheDirective; import org.restlet.data.Header; import org.restlet.data.MediaType; diff --git a/src/main/java/caosdb/server/resource/WebinterfaceBuildNumber.java b/src/main/java/org/caosdb/server/resource/WebinterfaceBuildNumber.java similarity index 96% rename from src/main/java/caosdb/server/resource/WebinterfaceBuildNumber.java rename to src/main/java/org/caosdb/server/resource/WebinterfaceBuildNumber.java index bb0e47f40164a7480a547b74cda33c83d375fb76..0fe186a0426002071e0b6c6a5ebe0b3f234e9b2a 100644 --- a/src/main/java/caosdb/server/resource/WebinterfaceBuildNumber.java +++ b/src/main/java/org/caosdb/server/resource/WebinterfaceBuildNumber.java @@ -16,9 +16,9 @@ * * <p>** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; -import caosdb.server.utils.WebinterfaceUtils; +import org.caosdb.server.utils.WebinterfaceUtils; import org.restlet.data.Status; import org.restlet.resource.Get; import org.restlet.resource.ResourceException; diff --git a/src/main/java/caosdb/server/resource/transaction/EntityNamesResource.java b/src/main/java/org/caosdb/server/resource/transaction/EntityNamesResource.java similarity index 53% rename from src/main/java/caosdb/server/resource/transaction/EntityNamesResource.java rename to src/main/java/org/caosdb/server/resource/transaction/EntityNamesResource.java index 2bfca90bf8e0c060caf7ca97b85ceaf7d0d35f5c..0b3f8b7aa4f4a7724b9b6646e7ecb72330293980 100644 --- a/src/main/java/caosdb/server/resource/transaction/EntityNamesResource.java +++ b/src/main/java/org/caosdb/server/resource/transaction/EntityNamesResource.java @@ -1,8 +1,8 @@ -package caosdb.server.resource.transaction; +package org.caosdb.server.resource.transaction; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.resource.transaction.handlers.GetNamesRequestHandler; -import caosdb.server.resource.transaction.handlers.RequestHandler; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.resource.transaction.handlers.GetNamesRequestHandler; +import org.caosdb.server.resource.transaction.handlers.RequestHandler; public class EntityNamesResource extends EntityResource { diff --git a/src/main/java/caosdb/server/resource/transaction/EntityResource.java b/src/main/java/org/caosdb/server/resource/transaction/EntityResource.java similarity index 85% rename from src/main/java/caosdb/server/resource/transaction/EntityResource.java rename to src/main/java/org/caosdb/server/resource/transaction/EntityResource.java index 70e7bdf73adbf5e950fe0a51e119a8dbbe2e054f..12659362e0a9a82e8cbb95e73e4d6ac6c2d27c6c 100644 --- a/src/main/java/caosdb/server/resource/transaction/EntityResource.java +++ b/src/main/java/org/caosdb/server/resource/transaction/EntityResource.java @@ -20,27 +20,27 @@ * * ** end header */ -package caosdb.server.resource.transaction; - -import caosdb.server.CaosDBException; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.entity.container.DeleteContainer; -import caosdb.server.entity.container.InsertContainer; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.entity.container.UpdateContainer; -import caosdb.server.resource.AbstractCaosDBServerResource; -import caosdb.server.resource.transaction.handlers.FileUploadHandler; -import caosdb.server.resource.transaction.handlers.RequestHandler; -import caosdb.server.resource.transaction.handlers.SimpleDeleteRequestHandler; -import caosdb.server.resource.transaction.handlers.SimpleGetRequestHandler; -import caosdb.server.resource.transaction.handlers.SimpleWriteHandler; -import caosdb.server.transaction.Delete; -import caosdb.server.transaction.Insert; -import caosdb.server.transaction.Retrieve; -import caosdb.server.transaction.Update; +package org.caosdb.server.resource.transaction; + import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.sql.SQLException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.entity.container.DeleteContainer; +import org.caosdb.server.entity.container.InsertContainer; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.entity.container.UpdateContainer; +import org.caosdb.server.resource.AbstractCaosDBServerResource; +import org.caosdb.server.resource.transaction.handlers.FileUploadHandler; +import org.caosdb.server.resource.transaction.handlers.RequestHandler; +import org.caosdb.server.resource.transaction.handlers.SimpleDeleteRequestHandler; +import org.caosdb.server.resource.transaction.handlers.SimpleGetRequestHandler; +import org.caosdb.server.resource.transaction.handlers.SimpleWriteHandler; +import org.caosdb.server.transaction.Delete; +import org.caosdb.server.transaction.Insert; +import org.caosdb.server.transaction.Retrieve; +import org.caosdb.server.transaction.Update; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.JDOMException; diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/FileUploadHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/FileUploadHandler.java similarity index 90% rename from src/main/java/caosdb/server/resource/transaction/handlers/FileUploadHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/FileUploadHandler.java index 48003f1525f006960cf155591bc14d9d684c1888..ec5c5bc4d144af9ce99f7b27915a52420c331bb5 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/FileUploadHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/FileUploadHandler.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.FileSystem; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.container.WritableContainer; -import caosdb.server.resource.transaction.EntityResource; -import caosdb.server.utils.ServerMessages; import java.io.IOException; import org.apache.commons.fileupload.FileItemIterator; import org.apache.commons.fileupload.FileItemStream; import org.apache.commons.fileupload.FileUploadException; import org.apache.commons.fileupload.disk.DiskFileItemFactory; +import org.caosdb.server.FileSystem; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.container.WritableContainer; +import org.caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; import org.restlet.data.MediaType; import org.restlet.ext.fileupload.RestletFileUpload; diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/GetNamesRequestHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/GetNamesRequestHandler.java similarity index 64% rename from src/main/java/caosdb/server/resource/transaction/handlers/GetNamesRequestHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/GetNamesRequestHandler.java index f69c112880e833d0c981b903562889e377fe6f23..c327c6833d281c07148c59be689ddfac25b33f4d 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/GetNamesRequestHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/GetNamesRequestHandler.java @@ -1,7 +1,7 @@ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.resource.transaction.EntityResource; public class GetNamesRequestHandler extends RequestHandler<RetrieveContainer> { diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/RequestHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/RequestHandler.java similarity index 85% rename from src/main/java/caosdb/server/resource/transaction/handlers/RequestHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/RequestHandler.java index e1390fe81782b353ccf2e401a9918747c6084ab3..fc49cc518db12e1f750716372f94b808dcb3874b 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/RequestHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/RequestHandler.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.resource.transaction.EntityResource; public abstract class RequestHandler<T extends TransactionContainer> { diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/RetrieveGlobalEntityPermissionsHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/RetrieveGlobalEntityPermissionsHandler.java similarity index 83% rename from src/main/java/caosdb/server/resource/transaction/handlers/RetrieveGlobalEntityPermissionsHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/RetrieveGlobalEntityPermissionsHandler.java index a1882857801659449516992b4a4cca34d643379c..6801e804a8bcb721e2c7170ad857126579cbfb46 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/RetrieveGlobalEntityPermissionsHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/RetrieveGlobalEntityPermissionsHandler.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.resource.transaction.EntityResource; public class RetrieveGlobalEntityPermissionsHandler extends SimpleGetRequestHandler { diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/RetriveOwnerRequestHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/RetriveOwnerRequestHandler.java similarity index 84% rename from src/main/java/caosdb/server/resource/transaction/handlers/RetriveOwnerRequestHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/RetriveOwnerRequestHandler.java index d942389a359b2c24eafc6ec4a98b230cbe33f226..7b2d698cb4673ba7e4ed30fc81fc249e89632734 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/RetriveOwnerRequestHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/RetriveOwnerRequestHandler.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.resource.transaction.EntityResource; public class RetriveOwnerRequestHandler extends SimpleGetRequestHandler { diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/SimpleDeleteRequestHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleDeleteRequestHandler.java similarity index 91% rename from src/main/java/caosdb/server/resource/transaction/handlers/SimpleDeleteRequestHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleDeleteRequestHandler.java index 7fb416451bd8f053df5231eb1002db0c03544f99..34c1a3836290f4e90fde5a1ec10a2818b7b63fae 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/SimpleDeleteRequestHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleDeleteRequestHandler.java @@ -22,10 +22,10 @@ * * ** end header */ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.entity.container.DeleteContainer; -import caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.entity.container.DeleteContainer; +import org.caosdb.server.resource.transaction.EntityResource; public class SimpleDeleteRequestHandler extends RequestHandler<DeleteContainer> { diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/SimpleGetRequestHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleGetRequestHandler.java similarity index 89% rename from src/main/java/caosdb/server/resource/transaction/handlers/SimpleGetRequestHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleGetRequestHandler.java index 18c89d46966a3e22b1a9066b84dcf2d05efd122c..b80d9c219e2cbda1e012c9c73993b5ea427c6ccf 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/SimpleGetRequestHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleGetRequestHandler.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.resource.transaction.EntityResource; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.resource.transaction.EntityResource; public class SimpleGetRequestHandler extends RequestHandler<RetrieveContainer> { diff --git a/src/main/java/caosdb/server/resource/transaction/handlers/SimpleWriteHandler.java b/src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleWriteHandler.java similarity index 91% rename from src/main/java/caosdb/server/resource/transaction/handlers/SimpleWriteHandler.java rename to src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleWriteHandler.java index 71afcc91321f8d9853cd18ae3ca12022501416ff..feb784da2f1ab9dcc09942a108bcce6bd073e128 100644 --- a/src/main/java/caosdb/server/resource/transaction/handlers/SimpleWriteHandler.java +++ b/src/main/java/org/caosdb/server/resource/transaction/handlers/SimpleWriteHandler.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.resource.transaction.handlers; +package org.caosdb.server.resource.transaction.handlers; -import caosdb.server.entity.container.WritableContainer; -import caosdb.server.resource.transaction.EntityResource; import java.util.List; +import org.caosdb.server.entity.container.WritableContainer; +import org.caosdb.server.resource.transaction.EntityResource; import org.jdom2.Element; public class SimpleWriteHandler<T extends WritableContainer> extends RequestHandler<T> { diff --git a/src/main/java/caosdb/server/scripting/CallerSerializer.java b/src/main/java/org/caosdb/server/scripting/CallerSerializer.java similarity index 95% rename from src/main/java/caosdb/server/scripting/CallerSerializer.java rename to src/main/java/org/caosdb/server/scripting/CallerSerializer.java index 3ffb941d9d4fe40a48b849c1de44b8349645d62f..b133ad5cf02afa0194beb175883b999e75810efe 100644 --- a/src/main/java/caosdb/server/scripting/CallerSerializer.java +++ b/src/main/java/org/caosdb/server/scripting/CallerSerializer.java @@ -21,11 +21,11 @@ * * ** end header */ -package caosdb.server.scripting; +package org.caosdb.server.scripting; -import caosdb.server.CaosDBException; -import caosdb.server.utils.Serializer; import java.io.IOException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.utils.Serializer; import org.jdom2.Element; /** diff --git a/src/main/java/caosdb/server/scripting/ScriptingPermissions.java b/src/main/java/org/caosdb/server/scripting/ScriptingPermissions.java similarity index 88% rename from src/main/java/caosdb/server/scripting/ScriptingPermissions.java rename to src/main/java/org/caosdb/server/scripting/ScriptingPermissions.java index 9165f133c070c351e7a4ecbb2c510c06b71734a2..78ad99d77d06b681838e455ad391c62e7ce85ca6 100644 --- a/src/main/java/caosdb/server/scripting/ScriptingPermissions.java +++ b/src/main/java/org/caosdb/server/scripting/ScriptingPermissions.java @@ -1,4 +1,4 @@ -package caosdb.server.scripting; +package org.caosdb.server.scripting; public class ScriptingPermissions { diff --git a/src/main/java/caosdb/server/scripting/ScriptingUtils.java b/src/main/java/org/caosdb/server/scripting/ScriptingUtils.java similarity index 90% rename from src/main/java/caosdb/server/scripting/ScriptingUtils.java rename to src/main/java/org/caosdb/server/scripting/ScriptingUtils.java index cee65faf9b25d3b9bfe0b28cc508edf59626682c..5bb9498944f02c3cc2bd79429dab10868299200f 100644 --- a/src/main/java/caosdb/server/scripting/ScriptingUtils.java +++ b/src/main/java/org/caosdb/server/scripting/ScriptingUtils.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.scripting; +package org.caosdb.server.scripting; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.entity.Message; -import caosdb.server.utils.ConfigurationException; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.Utils; import java.io.File; import java.nio.file.Path; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ConfigurationException; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.Utils; public class ScriptingUtils { diff --git a/src/main/java/caosdb/server/scripting/ServerSideScriptingCaller.java b/src/main/java/org/caosdb/server/scripting/ServerSideScriptingCaller.java similarity index 95% rename from src/main/java/caosdb/server/scripting/ServerSideScriptingCaller.java rename to src/main/java/org/caosdb/server/scripting/ServerSideScriptingCaller.java index faeb96e02738395647abb75fca3eaafe18040ad3..2ec19a426fdd5a7f0cb6438b86f73a3dc93f55cd 100644 --- a/src/main/java/caosdb/server/scripting/ServerSideScriptingCaller.java +++ b/src/main/java/org/caosdb/server/scripting/ServerSideScriptingCaller.java @@ -22,15 +22,8 @@ * ** end header */ -package caosdb.server.scripting; - -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.FileSystem; -import caosdb.server.ServerProperties; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.scripting; + import java.io.File; import java.io.FileNotFoundException; import java.io.IOException; @@ -41,6 +34,13 @@ import java.util.HashMap; import java.util.List; import java.util.Map; import org.apache.commons.io.FileUtils; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.FileSystem; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; /** * Calls server-side scripting scripts. @@ -170,7 +170,7 @@ public class ServerSideScriptingCaller { if (!link.getParentFile().exists()) { link.getParentFile().mkdirs(); } - caosdb.server.utils.FileUtils.createSymlink(link, f.getFile()); + org.caosdb.server.utils.FileUtils.createSymlink(link, f.getFile()); } } diff --git a/src/main/java/caosdb/server/scripting/TimeoutException.java b/src/main/java/org/caosdb/server/scripting/TimeoutException.java similarity index 96% rename from src/main/java/caosdb/server/scripting/TimeoutException.java rename to src/main/java/org/caosdb/server/scripting/TimeoutException.java index 655cb6a7782c29a894607db0373a4baa7b98611e..3eaa370893bc5baf9e643c7411f467e0421d277a 100644 --- a/src/main/java/caosdb/server/scripting/TimeoutException.java +++ b/src/main/java/org/caosdb/server/scripting/TimeoutException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.scripting; +package org.caosdb.server.scripting; public class TimeoutException extends Exception { diff --git a/src/main/java/caosdb/server/scripting/TimeoutProcess.java b/src/main/java/org/caosdb/server/scripting/TimeoutProcess.java similarity index 98% rename from src/main/java/caosdb/server/scripting/TimeoutProcess.java rename to src/main/java/org/caosdb/server/scripting/TimeoutProcess.java index f41a2663c6aae169b0ce28d4e14ab43135653237..c867ca3b7f0190b1cd5d6b6be4f595be10d2891a 100644 --- a/src/main/java/caosdb/server/scripting/TimeoutProcess.java +++ b/src/main/java/org/caosdb/server/scripting/TimeoutProcess.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.scripting; +package org.caosdb.server.scripting; import java.io.InputStream; diff --git a/src/main/java/caosdb/server/terminal/CaosDBTerminal.java b/src/main/java/org/caosdb/server/terminal/CaosDBTerminal.java similarity index 98% rename from src/main/java/caosdb/server/terminal/CaosDBTerminal.java rename to src/main/java/org/caosdb/server/terminal/CaosDBTerminal.java index c85495539d93d67af26b1b1ef4b62a35dd57ff48..96bd6315b7e32c03273a8b65bd489bfc061e0ef1 100644 --- a/src/main/java/caosdb/server/terminal/CaosDBTerminal.java +++ b/src/main/java/org/caosdb/server/terminal/CaosDBTerminal.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; import com.googlecode.lanterna.TerminalFacade; import com.googlecode.lanterna.gui.GUIScreen; diff --git a/src/main/java/caosdb/server/terminal/DatabaseAccessPanel.java b/src/main/java/org/caosdb/server/terminal/DatabaseAccessPanel.java similarity index 94% rename from src/main/java/caosdb/server/terminal/DatabaseAccessPanel.java rename to src/main/java/org/caosdb/server/terminal/DatabaseAccessPanel.java index 49a6e35de195d3d5ae78821db4cfe5e6f4aa283d..6877049605888682bd003f8382a931661e79602c 100644 --- a/src/main/java/caosdb/server/terminal/DatabaseAccessPanel.java +++ b/src/main/java/org/caosdb/server/terminal/DatabaseAccessPanel.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.utils.Observable; -import caosdb.server.utils.Observer; import com.googlecode.lanterna.gui.component.Label; import com.googlecode.lanterna.gui.component.Panel; import com.googlecode.lanterna.gui.component.Table; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.Observer; public final class DatabaseAccessPanel extends Panel implements Observer { diff --git a/src/main/java/caosdb/server/terminal/EntitiesPanel.java b/src/main/java/org/caosdb/server/terminal/EntitiesPanel.java similarity index 97% rename from src/main/java/caosdb/server/terminal/EntitiesPanel.java rename to src/main/java/org/caosdb/server/terminal/EntitiesPanel.java index 10c5296eba2f75e360d0621d96392528f66f5475..b2f7489de66eeae9771e911b45e7d4546cb4f5b9 100644 --- a/src/main/java/caosdb/server/terminal/EntitiesPanel.java +++ b/src/main/java/org/caosdb/server/terminal/EntitiesPanel.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; -import caosdb.server.utils.Info; import com.googlecode.lanterna.gui.component.Label; import com.googlecode.lanterna.gui.component.Panel; import com.googlecode.lanterna.gui.component.Table; +import org.caosdb.server.utils.Info; public final class EntitiesPanel extends Panel implements StatComponent { diff --git a/src/main/java/caosdb/server/terminal/MainWindow.java b/src/main/java/org/caosdb/server/terminal/MainWindow.java similarity index 98% rename from src/main/java/caosdb/server/terminal/MainWindow.java rename to src/main/java/org/caosdb/server/terminal/MainWindow.java index 7bdfefc21f167d68a687acfcded550aabe0432cd..aa22f12b23bed00dfb46db8c7cd140fb05551eec 100644 --- a/src/main/java/caosdb/server/terminal/MainWindow.java +++ b/src/main/java/org/caosdb/server/terminal/MainWindow.java @@ -20,9 +20,8 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; -import caosdb.server.utils.Observer; import com.googlecode.lanterna.gui.Action; import com.googlecode.lanterna.gui.Border; import com.googlecode.lanterna.gui.Window; @@ -35,6 +34,7 @@ import com.googlecode.lanterna.gui.dialog.MessageBox; import com.googlecode.lanterna.gui.layout.LinearLayout; import com.googlecode.lanterna.input.Key; import com.googlecode.lanterna.input.Key.Kind; +import org.caosdb.server.utils.Observer; public class MainWindow extends Window { diff --git a/src/main/java/caosdb/server/terminal/OutputStreamPanel.java b/src/main/java/org/caosdb/server/terminal/OutputStreamPanel.java similarity index 99% rename from src/main/java/caosdb/server/terminal/OutputStreamPanel.java rename to src/main/java/org/caosdb/server/terminal/OutputStreamPanel.java index 235a927cbbaca07e9433a88180269226d8ab88c7..50284f8a88e7d30596cc901be24108f3ea201d0a 100644 --- a/src/main/java/caosdb/server/terminal/OutputStreamPanel.java +++ b/src/main/java/org/caosdb/server/terminal/OutputStreamPanel.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; import com.googlecode.lanterna.gui.Action; import com.googlecode.lanterna.gui.component.Button; diff --git a/src/main/java/caosdb/server/terminal/StatComponent.java b/src/main/java/org/caosdb/server/terminal/StatComponent.java similarity index 96% rename from src/main/java/caosdb/server/terminal/StatComponent.java rename to src/main/java/org/caosdb/server/terminal/StatComponent.java index 24f9fa57e72f6422d4c342f02aa4d765fe0a7dc8..90a9ac1125425bd23415abf3e4186f00695b9b2f 100644 --- a/src/main/java/caosdb/server/terminal/StatComponent.java +++ b/src/main/java/org/caosdb/server/terminal/StatComponent.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; import com.googlecode.lanterna.gui.Component; diff --git a/src/main/java/caosdb/server/terminal/StatLabel.java b/src/main/java/org/caosdb/server/terminal/StatLabel.java similarity index 93% rename from src/main/java/caosdb/server/terminal/StatLabel.java rename to src/main/java/org/caosdb/server/terminal/StatLabel.java index 70568a924448379750d7a04d21b96ba0d0759c29..73a03ac31ed8874fc936807393701995130eaf7f 100644 --- a/src/main/java/caosdb/server/terminal/StatLabel.java +++ b/src/main/java/org/caosdb/server/terminal/StatLabel.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; -import caosdb.server.utils.Observable; -import caosdb.server.utils.Observer; import com.googlecode.lanterna.gui.component.Label; +import org.caosdb.server.utils.Observable; +import org.caosdb.server.utils.Observer; public class StatLabel extends Label implements Observer, StatComponent { diff --git a/src/main/java/caosdb/server/terminal/StatTable.java b/src/main/java/org/caosdb/server/terminal/StatTable.java similarity index 97% rename from src/main/java/caosdb/server/terminal/StatTable.java rename to src/main/java/org/caosdb/server/terminal/StatTable.java index 5d2ecb29204b63705e499b8ab71bea8d8c2b2255..e7234cdb8000a7c4dcc98463c3e9ca6cc8c9f19c 100644 --- a/src/main/java/caosdb/server/terminal/StatTable.java +++ b/src/main/java/org/caosdb/server/terminal/StatTable.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; import com.googlecode.lanterna.gui.Component; import com.googlecode.lanterna.gui.component.Panel; diff --git a/src/main/java/caosdb/server/terminal/StatsPanel.java b/src/main/java/org/caosdb/server/terminal/StatsPanel.java similarity index 98% rename from src/main/java/caosdb/server/terminal/StatsPanel.java rename to src/main/java/org/caosdb/server/terminal/StatsPanel.java index aa0f4a64926d5af851ed7b323d410d70a845957e..3b41ac6a9c4ae7366e85cffedbd71f83b30c6438 100644 --- a/src/main/java/caosdb/server/terminal/StatsPanel.java +++ b/src/main/java/org/caosdb/server/terminal/StatsPanel.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; import com.googlecode.lanterna.gui.Action; import com.googlecode.lanterna.gui.Border; diff --git a/src/main/java/caosdb/server/terminal/SystemErrPanel.java b/src/main/java/org/caosdb/server/terminal/SystemErrPanel.java similarity index 97% rename from src/main/java/caosdb/server/terminal/SystemErrPanel.java rename to src/main/java/org/caosdb/server/terminal/SystemErrPanel.java index 75e4291ac041d1c5ecc3b9d38fe024619750dbb8..9bf800fdb3c755cd8ea2b2a55119cf4e093fde09 100644 --- a/src/main/java/caosdb/server/terminal/SystemErrPanel.java +++ b/src/main/java/org/caosdb/server/terminal/SystemErrPanel.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; import com.googlecode.lanterna.gui.component.Label; import java.io.IOException; diff --git a/src/main/java/caosdb/server/terminal/SystemOutPanel.java b/src/main/java/org/caosdb/server/terminal/SystemOutPanel.java similarity index 97% rename from src/main/java/caosdb/server/terminal/SystemOutPanel.java rename to src/main/java/org/caosdb/server/terminal/SystemOutPanel.java index 48e16cc5f9365d57a7d9bc05a388a554bff388f3..b34cdaf97d8088a97ea66932d9abc96d6e1589be 100644 --- a/src/main/java/caosdb/server/terminal/SystemOutPanel.java +++ b/src/main/java/org/caosdb/server/terminal/SystemOutPanel.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.terminal; +package org.caosdb.server.terminal; import com.googlecode.lanterna.gui.component.Label; import java.io.IOException; diff --git a/src/main/java/caosdb/server/transaction/AccessControlTransaction.java b/src/main/java/org/caosdb/server/transaction/AccessControlTransaction.java similarity index 87% rename from src/main/java/caosdb/server/transaction/AccessControlTransaction.java rename to src/main/java/org/caosdb/server/transaction/AccessControlTransaction.java index ac5e3030c5b39aa49f2eb332e050a7b58b157fb0..0a2d1363427d9e21504b421c88e7605af59634ac 100644 --- a/src/main/java/caosdb/server/transaction/AccessControlTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/AccessControlTransaction.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.database.misc.RollBackHandler; -import caosdb.server.entity.Message; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.misc.RollBackHandler; +import org.caosdb.server.entity.Message; public abstract class AccessControlTransaction implements TransactionInterface { diff --git a/src/main/java/caosdb/server/transaction/ChecksumUpdater.java b/src/main/java/org/caosdb/server/transaction/ChecksumUpdater.java similarity index 88% rename from src/main/java/caosdb/server/transaction/ChecksumUpdater.java rename to src/main/java/org/caosdb/server/transaction/ChecksumUpdater.java index 29603fc5833837dfef4a16e8886cdca995c41b94..1d8bb44c1febdbf2722b5b33e2d1052ec37b0424 100644 --- a/src/main/java/caosdb/server/transaction/ChecksumUpdater.java +++ b/src/main/java/org/caosdb/server/transaction/ChecksumUpdater.java @@ -20,22 +20,22 @@ * * ** end header */ -package caosdb.server.transaction; - -import caosdb.server.CaosDBException; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.GetUpdateableChecksums; -import caosdb.server.database.backend.transaction.RetrieveSparseEntity; -import caosdb.server.database.backend.transaction.UpdateSparseEntity; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.utils.FileUtils; +package org.caosdb.server.transaction; + import java.io.IOException; import java.security.NoSuchAlgorithmException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.GetUpdateableChecksums; +import org.caosdb.server.database.backend.transaction.RetrieveSparseEntity; +import org.caosdb.server.database.backend.transaction.UpdateSparseEntity; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.utils.FileUtils; /** * Retrieves all file without a checksum, calculates one and stores it to the database (method diff --git a/src/main/java/caosdb/server/transaction/Delete.java b/src/main/java/org/caosdb/server/transaction/Delete.java similarity index 85% rename from src/main/java/caosdb/server/transaction/Delete.java rename to src/main/java/org/caosdb/server/transaction/Delete.java index 1d3aacbc78043fef6982b2b7663dc5d033e50e50..44e68b3afe6225f286ab76329b699f0cf0f10670 100644 --- a/src/main/java/caosdb/server/transaction/Delete.java +++ b/src/main/java/org/caosdb/server/transaction/Delete.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.DeleteEntity; -import caosdb.server.database.backend.transaction.RetrieveFullEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.DeleteContainer; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.DeleteEntity; +import org.caosdb.server.database.backend.transaction.RetrieveFullEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.DeleteContainer; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; public class Delete extends WriteTransaction<DeleteContainer> { diff --git a/src/main/java/caosdb/server/transaction/DeleteRoleTransaction.java b/src/main/java/org/caosdb/server/transaction/DeleteRoleTransaction.java similarity index 81% rename from src/main/java/caosdb/server/transaction/DeleteRoleTransaction.java rename to src/main/java/org/caosdb/server/transaction/DeleteRoleTransaction.java index e1ba3bec80663cb3b30d2dbdc48d9f9024c8f2d7..ad9a9925f8bed2ef03a1bcf9cd6b8c79adca6345 100644 --- a/src/main/java/caosdb/server/transaction/DeleteRoleTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/DeleteRoleTransaction.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.database.backend.transaction.DeleteRole; -import caosdb.server.database.backend.transaction.RetrieveRole; -import caosdb.server.database.backend.transaction.SetPermissionRules; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.database.backend.transaction.DeleteRole; +import org.caosdb.server.database.backend.transaction.RetrieveRole; +import org.caosdb.server.database.backend.transaction.SetPermissionRules; +import org.caosdb.server.utils.ServerMessages; public class DeleteRoleTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/DeleteUserTransaction.java b/src/main/java/org/caosdb/server/transaction/DeleteUserTransaction.java similarity index 78% rename from src/main/java/caosdb/server/transaction/DeleteUserTransaction.java rename to src/main/java/org/caosdb/server/transaction/DeleteUserTransaction.java index cdedce31b34153494ceb0be28e4c3a9da360bb6e..0f2f5b7fb676e436b131ca69678214c2e34b974c 100644 --- a/src/main/java/caosdb/server/transaction/DeleteUserTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/DeleteUserTransaction.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.CredentialsValidator; -import caosdb.server.accessControl.UserSources; -import caosdb.server.database.backend.transaction.DeletePassword; -import caosdb.server.database.backend.transaction.DeleteUser; -import caosdb.server.database.backend.transaction.RetrievePasswordValidator; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.CredentialsValidator; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.database.backend.transaction.DeletePassword; +import org.caosdb.server.database.backend.transaction.DeleteUser; +import org.caosdb.server.database.backend.transaction.RetrievePasswordValidator; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; public class DeleteUserTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/FileStorageConsistencyCheck.java b/src/main/java/org/caosdb/server/transaction/FileStorageConsistencyCheck.java similarity index 89% rename from src/main/java/caosdb/server/transaction/FileStorageConsistencyCheck.java rename to src/main/java/org/caosdb/server/transaction/FileStorageConsistencyCheck.java index 26cab30e898d2cd9f163ba3c9773b96c02110cbb..5d2a04b1e9f45360f47a93889f638eab23fbd512 100644 --- a/src/main/java/caosdb/server/transaction/FileStorageConsistencyCheck.java +++ b/src/main/java/org/caosdb/server/transaction/FileStorageConsistencyCheck.java @@ -20,27 +20,27 @@ * * ** end header */ -package caosdb.server.transaction; - -import caosdb.datetime.UTCDateTime; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.FileConsistencyCheck; -import caosdb.server.database.backend.transaction.GetFileIterator; -import caosdb.server.database.backend.transaction.GetFileRecordByPath; -import caosdb.server.database.backend.transaction.RetrieveAllUncheckedFiles; -import caosdb.server.database.backend.transaction.SetFileCheckedTimestamp; -import caosdb.server.database.exceptions.EntityDoesNotExistException; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.entity.Message; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.utils.SHA512; +package org.caosdb.server.transaction; + import java.util.ArrayList; import java.util.HashMap; import java.util.Iterator; import java.util.List; import java.util.Map.Entry; import java.util.TimeZone; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.FileConsistencyCheck; +import org.caosdb.server.database.backend.transaction.GetFileIterator; +import org.caosdb.server.database.backend.transaction.GetFileRecordByPath; +import org.caosdb.server.database.backend.transaction.RetrieveAllUncheckedFiles; +import org.caosdb.server.database.backend.transaction.SetFileCheckedTimestamp; +import org.caosdb.server.database.exceptions.EntityDoesNotExistException; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.utils.SHA512; import org.jdom2.Element; public class FileStorageConsistencyCheck extends Thread diff --git a/src/main/java/caosdb/server/transaction/Insert.java b/src/main/java/org/caosdb/server/transaction/Insert.java similarity index 86% rename from src/main/java/caosdb/server/transaction/Insert.java rename to src/main/java/org/caosdb/server/transaction/Insert.java index c1d53f3051eb65efd9d658179e514e13863c313b..f60fc1286ae909eb7fd999aa3af1f8379dd331ff 100644 --- a/src/main/java/caosdb/server/transaction/Insert.java +++ b/src/main/java/org/caosdb/server/transaction/Insert.java @@ -20,19 +20,19 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.InsertEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Version; -import caosdb.server.entity.container.InsertContainer; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.permissions.EntityACL; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.InsertEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Version; +import org.caosdb.server.entity.container.InsertContainer; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.permissions.EntityACL; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; public class Insert extends WriteTransaction<InsertContainer> { diff --git a/src/main/java/caosdb/server/transaction/InsertLogRecordTransaction.java b/src/main/java/org/caosdb/server/transaction/InsertLogRecordTransaction.java similarity index 87% rename from src/main/java/caosdb/server/transaction/InsertLogRecordTransaction.java rename to src/main/java/org/caosdb/server/transaction/InsertLogRecordTransaction.java index 3762b0bed3f726dd521f754043d0e99a5d2a3913..be01d93086e65694313c0d97c6b1603aef6a6bc7 100644 --- a/src/main/java/caosdb/server/transaction/InsertLogRecordTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/InsertLogRecordTransaction.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.InsertLogRecord; import java.util.List; import java.util.logging.LogRecord; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.InsertLogRecord; public class InsertLogRecordTransaction implements TransactionInterface { diff --git a/src/main/java/caosdb/server/transaction/InsertRoleTransaction.java b/src/main/java/org/caosdb/server/transaction/InsertRoleTransaction.java similarity index 82% rename from src/main/java/caosdb/server/transaction/InsertRoleTransaction.java rename to src/main/java/org/caosdb/server/transaction/InsertRoleTransaction.java index 8377210690692c8819e5197e35a8e549d27f2a30..b70e2bd71259645a8f619cb25d36998579e3dca7 100644 --- a/src/main/java/caosdb/server/transaction/InsertRoleTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/InsertRoleTransaction.java @@ -20,14 +20,14 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.Role; -import caosdb.server.database.backend.transaction.InsertRole; -import caosdb.server.database.backend.transaction.RetrieveRole; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.backend.transaction.InsertRole; +import org.caosdb.server.database.backend.transaction.RetrieveRole; +import org.caosdb.server.utils.ServerMessages; public class InsertRoleTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/InsertUserTransaction.java b/src/main/java/org/caosdb/server/transaction/InsertUserTransaction.java similarity index 81% rename from src/main/java/caosdb/server/transaction/InsertUserTransaction.java rename to src/main/java/org/caosdb/server/transaction/InsertUserTransaction.java index 75b876b8bc291ea246746b4a8e85ccd26055c173..b91b1aa6b31911822ed9df4c1eaffa87374ede82 100644 --- a/src/main/java/caosdb/server/transaction/InsertUserTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/InsertUserTransaction.java @@ -20,18 +20,18 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.UserSources; -import caosdb.server.accessControl.UserStatus; -import caosdb.server.database.backend.transaction.RetrievePasswordValidator; -import caosdb.server.database.backend.transaction.SetPassword; -import caosdb.server.database.backend.transaction.UpdateUser; -import caosdb.server.database.proto.ProtoUser; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.Utils; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.accessControl.UserStatus; +import org.caosdb.server.database.backend.transaction.RetrievePasswordValidator; +import org.caosdb.server.database.backend.transaction.SetPassword; +import org.caosdb.server.database.backend.transaction.UpdateUser; +import org.caosdb.server.database.proto.ProtoUser; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.Utils; import org.jdom2.Element; public class InsertUserTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/Retrieve.java b/src/main/java/org/caosdb/server/transaction/Retrieve.java similarity index 85% rename from src/main/java/caosdb/server/transaction/Retrieve.java rename to src/main/java/org/caosdb/server/transaction/Retrieve.java index 0de1b8e06b66a4293668fb499fb28f33fa398187..5b01657a9c0df55f2b93fe83532b074543debff9 100644 --- a/src/main/java/caosdb/server/transaction/Retrieve.java +++ b/src/main/java/org/caosdb/server/transaction/Retrieve.java @@ -20,22 +20,22 @@ * * ** end header */ -package caosdb.server.transaction; - -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.RetrieveFullEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.entity.xml.SetFieldStrategy; -import caosdb.server.entity.xml.ToElementStrategy; -import caosdb.server.entity.xml.ToElementable; -import caosdb.server.jobs.core.Mode; -import caosdb.server.jobs.core.RemoveDuplicates; -import caosdb.server.jobs.core.ResolveNames; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.transaction; + import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.RetrieveFullEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.entity.xml.ToElementStrategy; +import org.caosdb.server.entity.xml.ToElementable; +import org.caosdb.server.jobs.core.Mode; +import org.caosdb.server.jobs.core.RemoveDuplicates; +import org.caosdb.server.jobs.core.ResolveNames; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; public class Retrieve extends Transaction<RetrieveContainer> { diff --git a/src/main/java/caosdb/server/transaction/RetrieveLogRecordTransaction.java b/src/main/java/org/caosdb/server/transaction/RetrieveLogRecordTransaction.java similarity index 89% rename from src/main/java/caosdb/server/transaction/RetrieveLogRecordTransaction.java rename to src/main/java/org/caosdb/server/transaction/RetrieveLogRecordTransaction.java index bbe2e1f11a7bd4c7705a790dec78903fb0e7c20a..49d850dbcb672767da33a7c855063b04e1099f29 100644 --- a/src/main/java/caosdb/server/transaction/RetrieveLogRecordTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/RetrieveLogRecordTransaction.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.RetrieveLogRecord; import java.util.List; import java.util.logging.Level; import java.util.logging.LogRecord; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.RetrieveLogRecord; public class RetrieveLogRecordTransaction implements TransactionInterface { diff --git a/src/main/java/caosdb/server/transaction/RetrievePasswordValidatorTransaction.java b/src/main/java/org/caosdb/server/transaction/RetrievePasswordValidatorTransaction.java similarity index 86% rename from src/main/java/caosdb/server/transaction/RetrievePasswordValidatorTransaction.java rename to src/main/java/org/caosdb/server/transaction/RetrievePasswordValidatorTransaction.java index d18b5c306373d6b89aa924bd154db444fbdb8f9a..bb1e136bcb62c28800d0b7c2c0d88c9a2ee34634 100644 --- a/src/main/java/caosdb/server/transaction/RetrievePasswordValidatorTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/RetrievePasswordValidatorTransaction.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.CredentialsValidator; -import caosdb.server.database.backend.transaction.RetrievePasswordValidator; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.accessControl.CredentialsValidator; +import org.caosdb.server.database.backend.transaction.RetrievePasswordValidator; +import org.caosdb.server.utils.ServerMessages; public class RetrievePasswordValidatorTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/RetrievePermissionRulesTransaction.java b/src/main/java/org/caosdb/server/transaction/RetrievePermissionRulesTransaction.java similarity index 84% rename from src/main/java/caosdb/server/transaction/RetrievePermissionRulesTransaction.java rename to src/main/java/org/caosdb/server/transaction/RetrievePermissionRulesTransaction.java index d02722fd9e89e70c26e8782252c65fb9e199158c..225d068895d6484448b149d6b925facaabbf75fb 100644 --- a/src/main/java/caosdb/server/transaction/RetrievePermissionRulesTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/RetrievePermissionRulesTransaction.java @@ -20,13 +20,13 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.backend.transaction.RetrievePermissionRules; -import caosdb.server.database.backend.transaction.RetrieveRole; -import caosdb.server.permissions.PermissionRule; -import caosdb.server.utils.ServerMessages; import java.util.HashSet; +import org.caosdb.server.database.backend.transaction.RetrievePermissionRules; +import org.caosdb.server.database.backend.transaction.RetrieveRole; +import org.caosdb.server.permissions.PermissionRule; +import org.caosdb.server.utils.ServerMessages; public class RetrievePermissionRulesTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/RetrieveRoleTransaction.java b/src/main/java/org/caosdb/server/transaction/RetrieveRoleTransaction.java similarity index 87% rename from src/main/java/caosdb/server/transaction/RetrieveRoleTransaction.java rename to src/main/java/org/caosdb/server/transaction/RetrieveRoleTransaction.java index 4d019f87fb572ce8e75393302764e8146034ee22..c7c251ba9847fe29f84589297f846f436f2a1309 100644 --- a/src/main/java/caosdb/server/transaction/RetrieveRoleTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/RetrieveRoleTransaction.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.Role; -import caosdb.server.database.backend.transaction.RetrieveRole; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.backend.transaction.RetrieveRole; +import org.caosdb.server.utils.ServerMessages; public class RetrieveRoleTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/RetrieveSparseEntityByPath.java b/src/main/java/org/caosdb/server/transaction/RetrieveSparseEntityByPath.java similarity index 86% rename from src/main/java/caosdb/server/transaction/RetrieveSparseEntityByPath.java rename to src/main/java/org/caosdb/server/transaction/RetrieveSparseEntityByPath.java index 2b936247bba9ece2d4bb9ab5cb1a5a1b2cbada74..d82985fe8060b3919d48c17a6bbd2994fc92c5bf 100644 --- a/src/main/java/caosdb/server/transaction/RetrieveSparseEntityByPath.java +++ b/src/main/java/org/caosdb/server/transaction/RetrieveSparseEntityByPath.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.backend.transaction.GetFileRecordByPath; -import caosdb.server.database.backend.transaction.RetrieveSparseEntity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.database.backend.transaction.GetFileRecordByPath; +import org.caosdb.server.database.backend.transaction.RetrieveSparseEntity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.container.TransactionContainer; public class RetrieveSparseEntityByPath extends Transaction<TransactionContainer> { diff --git a/src/main/java/caosdb/server/transaction/RetrieveUserRolesTransaction.java b/src/main/java/org/caosdb/server/transaction/RetrieveUserRolesTransaction.java similarity index 91% rename from src/main/java/caosdb/server/transaction/RetrieveUserRolesTransaction.java rename to src/main/java/org/caosdb/server/transaction/RetrieveUserRolesTransaction.java index e864c20bcf040faf78dc54e24dbcdefc1a8be795..97e518d06ac9ad5766b3801be8b1f1403cf8af3f 100644 --- a/src/main/java/caosdb/server/transaction/RetrieveUserRolesTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/RetrieveUserRolesTransaction.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.UserSources; -import caosdb.server.utils.ServerMessages; import java.util.Set; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; public class RetrieveUserRolesTransaction implements TransactionInterface { diff --git a/src/main/java/caosdb/server/transaction/RetrieveUserTransaction.java b/src/main/java/org/caosdb/server/transaction/RetrieveUserTransaction.java similarity index 88% rename from src/main/java/caosdb/server/transaction/RetrieveUserTransaction.java rename to src/main/java/org/caosdb/server/transaction/RetrieveUserTransaction.java index f2728a64664ad72f113e55a91ef87496810ad7c6..228b1585233ae71d3b7130196f68c3b9f83f5ed2 100644 --- a/src/main/java/caosdb/server/transaction/RetrieveUserTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/RetrieveUserTransaction.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.UserSources; -import caosdb.server.accessControl.UserStatus; -import caosdb.server.database.backend.transaction.RetrieveUser; -import caosdb.server.database.proto.ProtoUser; -import caosdb.server.utils.ServerMessages; import java.util.Set; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.accessControl.UserStatus; +import org.caosdb.server.database.backend.transaction.RetrieveUser; +import org.caosdb.server.database.proto.ProtoUser; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; public class RetrieveUserTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/Transaction.java b/src/main/java/org/caosdb/server/transaction/Transaction.java similarity index 88% rename from src/main/java/caosdb/server/transaction/Transaction.java rename to src/main/java/org/caosdb/server/transaction/Transaction.java index d2c16438b5c071fec72b11b600604b46c4b2da30..0235b8a25cd1d7df9f923023b1be2d5597038b0e 100644 --- a/src/main/java/caosdb/server/transaction/Transaction.java +++ b/src/main/java/org/caosdb/server/transaction/Transaction.java @@ -22,33 +22,33 @@ * * ** end header */ -package caosdb.server.transaction; - -import caosdb.datetime.UTCDateTime; -import caosdb.server.accessControl.Principal; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.InsertTransactionHistory; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.jobs.Job; -import caosdb.server.jobs.JobExecutionTime; -import caosdb.server.jobs.Schedule; -import caosdb.server.jobs.core.AccessControl; -import caosdb.server.jobs.core.CheckDatatypePresent; -import caosdb.server.jobs.core.CheckEntityACLRoles; -import caosdb.server.jobs.core.Mode; -import caosdb.server.jobs.core.PickUp; -import caosdb.server.utils.AbstractObservable; -import caosdb.server.utils.Info; -import caosdb.server.utils.Observer; +package org.caosdb.server.transaction; + import java.util.HashMap; import java.util.List; import org.apache.shiro.subject.Subject; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.InsertTransactionHistory; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.jobs.Job; +import org.caosdb.server.jobs.JobExecutionTime; +import org.caosdb.server.jobs.Schedule; +import org.caosdb.server.jobs.core.AccessControl; +import org.caosdb.server.jobs.core.CheckDatatypePresent; +import org.caosdb.server.jobs.core.CheckEntityACLRoles; +import org.caosdb.server.jobs.core.Mode; +import org.caosdb.server.jobs.core.PickUp; +import org.caosdb.server.utils.AbstractObservable; +import org.caosdb.server.utils.Info; +import org.caosdb.server.utils.Observer; public abstract class Transaction<C extends TransactionContainer> extends AbstractObservable implements TransactionInterface { diff --git a/src/main/java/caosdb/server/transaction/TransactionInterface.java b/src/main/java/org/caosdb/server/transaction/TransactionInterface.java similarity index 85% rename from src/main/java/caosdb/server/transaction/TransactionInterface.java rename to src/main/java/org/caosdb/server/transaction/TransactionInterface.java index 1aaf2786cc613709c59c92b7102474cead00ca1c..1aa41b2bbc31063b2978aa9c141e75c98799f124 100644 --- a/src/main/java/caosdb/server/transaction/TransactionInterface.java +++ b/src/main/java/org/caosdb/server/transaction/TransactionInterface.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.misc.RollBackHandler; -import caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.misc.RollBackHandler; +import org.caosdb.server.database.misc.TransactionBenchmark; public interface TransactionInterface { diff --git a/src/main/java/caosdb/server/transaction/Update.java b/src/main/java/org/caosdb/server/transaction/Update.java similarity index 94% rename from src/main/java/caosdb/server/transaction/Update.java rename to src/main/java/org/caosdb/server/transaction/Update.java index b9e6e8de19f137014d10d1c6516c07ca2acabf8e..f5a9a7ffd8b32e4b8d220ea6bba44731b51047ef 100644 --- a/src/main/java/caosdb/server/transaction/Update.java +++ b/src/main/java/org/caosdb/server/transaction/Update.java @@ -20,30 +20,30 @@ * * ** end header */ -package caosdb.server.transaction; - -import caosdb.server.CaosDBException; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.RetrieveFullEntity; -import caosdb.server.database.backend.transaction.UpdateEntity; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.RetrieveEntity; -import caosdb.server.entity.container.TransactionContainer; -import caosdb.server.entity.container.UpdateContainer; -import caosdb.server.entity.wrapper.Parent; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.permissions.EntityPermission; -import caosdb.server.permissions.Permission; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; +package org.caosdb.server.transaction; + import com.google.common.base.Objects; import java.io.IOException; import java.security.NoSuchAlgorithmException; import java.util.HashSet; import java.util.Set; import org.apache.shiro.authz.AuthorizationException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.RetrieveFullEntity; +import org.caosdb.server.database.backend.transaction.UpdateEntity; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.RetrieveEntity; +import org.caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.entity.container.UpdateContainer; +import org.caosdb.server.entity.wrapper.Parent; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.permissions.EntityPermission; +import org.caosdb.server.permissions.Permission; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; public class Update extends WriteTransaction<UpdateContainer> { diff --git a/src/main/java/caosdb/server/transaction/UpdatePermissionRulesTransaction.java b/src/main/java/org/caosdb/server/transaction/UpdatePermissionRulesTransaction.java similarity index 83% rename from src/main/java/caosdb/server/transaction/UpdatePermissionRulesTransaction.java rename to src/main/java/org/caosdb/server/transaction/UpdatePermissionRulesTransaction.java index e537b001f2af65e35c65e8c8ad88d37a2fd2bc01..4f8c9369fe915675e24c55e9fc7e0052ede360b3 100644 --- a/src/main/java/caosdb/server/transaction/UpdatePermissionRulesTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/UpdatePermissionRulesTransaction.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.database.backend.transaction.RetrieveRole; -import caosdb.server.database.backend.transaction.SetPermissionRules; -import caosdb.server.permissions.PermissionRule; -import caosdb.server.utils.ServerMessages; import java.util.Set; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.database.backend.transaction.RetrieveRole; +import org.caosdb.server.database.backend.transaction.SetPermissionRules; +import org.caosdb.server.permissions.PermissionRule; +import org.caosdb.server.utils.ServerMessages; public class UpdatePermissionRulesTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/UpdateRoleTransaction.java b/src/main/java/org/caosdb/server/transaction/UpdateRoleTransaction.java similarity index 80% rename from src/main/java/caosdb/server/transaction/UpdateRoleTransaction.java rename to src/main/java/org/caosdb/server/transaction/UpdateRoleTransaction.java index dfec776005800469654f144a0c5ae6f0213a04ad..7e1632f8a0a9252c6e400d352bb63e133f6ae9e6 100644 --- a/src/main/java/caosdb/server/transaction/UpdateRoleTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/UpdateRoleTransaction.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.Role; -import caosdb.server.accessControl.UserSources; -import caosdb.server.database.backend.transaction.InsertRole; -import caosdb.server.database.backend.transaction.RetrieveRole; -import caosdb.server.utils.ServerMessages; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.database.backend.transaction.InsertRole; +import org.caosdb.server.database.backend.transaction.RetrieveRole; +import org.caosdb.server.utils.ServerMessages; public class UpdateRoleTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/UpdateUserRolesTransaction.java b/src/main/java/org/caosdb/server/transaction/UpdateUserRolesTransaction.java similarity index 87% rename from src/main/java/caosdb/server/transaction/UpdateUserRolesTransaction.java rename to src/main/java/org/caosdb/server/transaction/UpdateUserRolesTransaction.java index f11400c3826170de658fd9e5a634665f00e1cb44..a74d875fc8b4d14821de24522e8b9bc531416ee5 100644 --- a/src/main/java/caosdb/server/transaction/UpdateUserRolesTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/UpdateUserRolesTransaction.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.UserSources; -import caosdb.server.database.backend.transaction.RetrieveRole; -import caosdb.server.database.backend.transaction.UpdateUserRoles; -import caosdb.server.utils.ServerMessages; import java.util.HashSet; import java.util.Set; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.database.backend.transaction.RetrieveRole; +import org.caosdb.server.database.backend.transaction.UpdateUserRoles; +import org.caosdb.server.utils.ServerMessages; import org.jdom2.Element; public class UpdateUserRolesTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/UpdateUserTransaction.java b/src/main/java/org/caosdb/server/transaction/UpdateUserTransaction.java similarity index 85% rename from src/main/java/caosdb/server/transaction/UpdateUserTransaction.java rename to src/main/java/org/caosdb/server/transaction/UpdateUserTransaction.java index ca29bb7977da8fc677c774b30a1f3fa78879c5a7..dc93549a4e5a65d474043f109d136048c37d6146 100644 --- a/src/main/java/caosdb/server/transaction/UpdateUserTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/UpdateUserTransaction.java @@ -20,24 +20,24 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.accessControl.ACMPermissions; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.UserSources; -import caosdb.server.accessControl.UserStatus; -import caosdb.server.database.backend.transaction.RetrieveUser; -import caosdb.server.database.backend.transaction.SetPassword; -import caosdb.server.database.backend.transaction.UpdateUser; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoUser; -import caosdb.server.entity.Entity; -import caosdb.server.entity.RetrieveEntity; -import caosdb.server.entity.container.RetrieveContainer; -import caosdb.server.utils.EntityStatus; -import caosdb.server.utils.ServerMessages; -import caosdb.server.utils.Utils; import org.apache.shiro.SecurityUtils; +import org.caosdb.server.accessControl.ACMPermissions; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.accessControl.UserStatus; +import org.caosdb.server.database.backend.transaction.RetrieveUser; +import org.caosdb.server.database.backend.transaction.SetPassword; +import org.caosdb.server.database.backend.transaction.UpdateUser; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoUser; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.RetrieveEntity; +import org.caosdb.server.entity.container.RetrieveContainer; +import org.caosdb.server.utils.EntityStatus; +import org.caosdb.server.utils.ServerMessages; +import org.caosdb.server.utils.Utils; import org.jdom2.Element; public class UpdateUserTransaction extends AccessControlTransaction { diff --git a/src/main/java/caosdb/server/transaction/WriteTransaction.java b/src/main/java/org/caosdb/server/transaction/WriteTransaction.java similarity index 90% rename from src/main/java/caosdb/server/transaction/WriteTransaction.java rename to src/main/java/org/caosdb/server/transaction/WriteTransaction.java index ec37d19d6f5a4663c0af0adda186c282215a302b..04c3834caad3264d6c1b8e5c99cf5b17a513e403 100644 --- a/src/main/java/caosdb/server/transaction/WriteTransaction.java +++ b/src/main/java/org/caosdb/server/transaction/WriteTransaction.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import caosdb.server.database.misc.RollBackHandler; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.container.TransactionContainer; +import org.caosdb.server.database.misc.RollBackHandler; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.container.TransactionContainer; public abstract class WriteTransaction<C extends TransactionContainer> extends Transaction<C> { diff --git a/src/main/java/caosdb/server/utils/AbstractObservable.java b/src/main/java/org/caosdb/server/utils/AbstractObservable.java similarity index 98% rename from src/main/java/caosdb/server/utils/AbstractObservable.java rename to src/main/java/org/caosdb/server/utils/AbstractObservable.java index d52a51bfef0375cad9069d57b744c0618813aae3..a19fff9d44ce7339a9cdc6712e0806ef42bdfd40 100644 --- a/src/main/java/caosdb/server/utils/AbstractObservable.java +++ b/src/main/java/org/caosdb/server/utils/AbstractObservable.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.util.Iterator; import org.eclipse.jetty.util.ConcurrentHashSet; diff --git a/src/main/java/caosdb/server/utils/AsynchronousHasher.java b/src/main/java/org/caosdb/server/utils/AsynchronousHasher.java similarity index 98% rename from src/main/java/caosdb/server/utils/AsynchronousHasher.java rename to src/main/java/org/caosdb/server/utils/AsynchronousHasher.java index 3c504c3f4b0532f692431c83b7ca441bfd8808f3..b7f89f84dcf66c93a3025ac625fb962a1be1671c 100644 --- a/src/main/java/caosdb/server/utils/AsynchronousHasher.java +++ b/src/main/java/org/caosdb/server/utils/AsynchronousHasher.java @@ -1,3 +1,4 @@ +package org.caosdb.server.utils; /* * ** header v3.0 * This file is a part of the CaosDB Project. diff --git a/src/main/java/caosdb/server/utils/ConfigurationException.java b/src/main/java/org/caosdb/server/utils/ConfigurationException.java similarity index 97% rename from src/main/java/caosdb/server/utils/ConfigurationException.java rename to src/main/java/org/caosdb/server/utils/ConfigurationException.java index 74a741873b3d4e53f6d5af1dfcf2bc0bda1b125b..3c9e77149ce12bc6e6f663788cdf86fba72bed81 100644 --- a/src/main/java/caosdb/server/utils/ConfigurationException.java +++ b/src/main/java/org/caosdb/server/utils/ConfigurationException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public class ConfigurationException extends RuntimeException { diff --git a/src/main/java/caosdb/server/utils/CronJob.java b/src/main/java/org/caosdb/server/utils/CronJob.java similarity index 97% rename from src/main/java/caosdb/server/utils/CronJob.java rename to src/main/java/org/caosdb/server/utils/CronJob.java index a6608b1020df2796839ec419203630db4a1ee921..8110a51752d996fc2f4fd2af3e5b7350f3e4d01f 100644 --- a/src/main/java/caosdb/server/utils/CronJob.java +++ b/src/main/java/org/caosdb/server/utils/CronJob.java @@ -20,10 +20,10 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; -import caosdb.server.CaosDBServer; import java.util.HashMap; +import org.caosdb.server.CaosDBServer; public class CronJob { diff --git a/src/main/java/caosdb/server/utils/EntityStatus.java b/src/main/java/org/caosdb/server/utils/EntityStatus.java similarity index 98% rename from src/main/java/caosdb/server/utils/EntityStatus.java rename to src/main/java/org/caosdb/server/utils/EntityStatus.java index 3e906302c45623ae0cacba7f45c20dd5f560a7fb..ef8bdc101c61e216c9aa448d667b59dfa5107672 100644 --- a/src/main/java/caosdb/server/utils/EntityStatus.java +++ b/src/main/java/org/caosdb/server/utils/EntityStatus.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; /** * IGNORE - This instance must be ignored during further processing. <br> diff --git a/src/main/java/caosdb/server/utils/FileUtils.java b/src/main/java/org/caosdb/server/utils/FileUtils.java similarity index 98% rename from src/main/java/caosdb/server/utils/FileUtils.java rename to src/main/java/org/caosdb/server/utils/FileUtils.java index 2357b7217c0fa9b112dd6c9e45d5be64d36edefb..70ba003018e3ccc7831bf9f536e827552445ec6a 100644 --- a/src/main/java/caosdb/server/utils/FileUtils.java +++ b/src/main/java/org/caosdb/server/utils/FileUtils.java @@ -20,18 +20,12 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import static java.nio.file.Files.isSameFile; import static java.nio.file.Files.isSymbolicLink; import static java.nio.file.Files.readSymbolicLink; -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.FileSystem; -import caosdb.server.ServerProperties; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; import java.io.BufferedReader; import java.io.File; import java.io.FileInputStream; @@ -43,6 +37,12 @@ import java.nio.file.LinkOption; import java.security.MessageDigest; import java.security.NoSuchAlgorithmException; import java.util.Arrays; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.FileSystem; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; import org.eclipse.jetty.io.RuntimeIOException; public class FileUtils { diff --git a/src/main/java/caosdb/server/utils/FlagInfo.java b/src/main/java/org/caosdb/server/utils/FlagInfo.java similarity index 92% rename from src/main/java/caosdb/server/utils/FlagInfo.java rename to src/main/java/org/caosdb/server/utils/FlagInfo.java index 6a94194ba401e36c3c4e2fbc41c939b0c3aa6a43..9ddd131f4c219cbb98b860d77fd49e76d375a7ab 100644 --- a/src/main/java/caosdb/server/utils/FlagInfo.java +++ b/src/main/java/org/caosdb/server/utils/FlagInfo.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; -import caosdb.server.jobs.FlagJob; -import caosdb.server.jobs.Job; -import caosdb.server.jobs.JobAnnotation; -import caosdb.server.transaction.TransactionInterface; import java.lang.annotation.Annotation; import java.util.ArrayList; import java.util.Set; +import org.caosdb.server.jobs.FlagJob; +import org.caosdb.server.jobs.Job; +import org.caosdb.server.jobs.JobAnnotation; +import org.caosdb.server.transaction.TransactionInterface; import org.jdom2.Element; import org.reflections.Reflections; diff --git a/src/main/java/caosdb/server/utils/HashAlgorithm.java b/src/main/java/org/caosdb/server/utils/HashAlgorithm.java similarity index 96% rename from src/main/java/caosdb/server/utils/HashAlgorithm.java rename to src/main/java/org/caosdb/server/utils/HashAlgorithm.java index d6155a854aa8944fc7eeb861007b5aed8f3a7946..6bf517fc5b906b4199219bde5654dbdebf3c5ecb 100644 --- a/src/main/java/caosdb/server/utils/HashAlgorithm.java +++ b/src/main/java/org/caosdb/server/utils/HashAlgorithm.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.io.File; diff --git a/src/main/java/caosdb/server/utils/HashException.java b/src/main/java/org/caosdb/server/utils/HashException.java similarity index 93% rename from src/main/java/caosdb/server/utils/HashException.java rename to src/main/java/org/caosdb/server/utils/HashException.java index 6df49b0a1fc28dd37c315bd05047db2750709fa8..2140f6d4d780fc3849f45bde5a051e6ad4f0abe8 100644 --- a/src/main/java/caosdb/server/utils/HashException.java +++ b/src/main/java/org/caosdb/server/utils/HashException.java @@ -20,9 +20,9 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; -import caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBException; public class HashException extends CaosDBException { diff --git a/src/main/java/caosdb/server/utils/HashNotReadyException.java b/src/main/java/org/caosdb/server/utils/HashNotReadyException.java similarity index 97% rename from src/main/java/caosdb/server/utils/HashNotReadyException.java rename to src/main/java/org/caosdb/server/utils/HashNotReadyException.java index 2638f6121b21dfa47ab1792ddbeb1f0e5c1664c5..c3c7ccfd47ba0fa47dd9abb0a35fae18a913ed4f 100644 --- a/src/main/java/caosdb/server/utils/HashNotReadyException.java +++ b/src/main/java/org/caosdb/server/utils/HashNotReadyException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public class HashNotReadyException extends HashException { diff --git a/src/main/java/caosdb/server/utils/HashTimeoutException.java b/src/main/java/org/caosdb/server/utils/HashTimeoutException.java similarity index 97% rename from src/main/java/caosdb/server/utils/HashTimeoutException.java rename to src/main/java/org/caosdb/server/utils/HashTimeoutException.java index 03423c5e1d20631ae6f1e0ab2abff0272f432124..92e105a23cf1757102ff6ec9b80c76c3965ce9c8 100644 --- a/src/main/java/caosdb/server/utils/HashTimeoutException.java +++ b/src/main/java/org/caosdb/server/utils/HashTimeoutException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public class HashTimeoutException extends HashException { diff --git a/src/main/java/caosdb/server/utils/Hasher.java b/src/main/java/org/caosdb/server/utils/Hasher.java similarity index 97% rename from src/main/java/caosdb/server/utils/Hasher.java rename to src/main/java/org/caosdb/server/utils/Hasher.java index 0d01e3f7cf572596323a5949dfd3d192a6c7d6bf..9eb009cd6e3445f3cc87639e8fc6d14793f386f2 100644 --- a/src/main/java/caosdb/server/utils/Hasher.java +++ b/src/main/java/org/caosdb/server/utils/Hasher.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.io.File; import java.io.IOException; diff --git a/src/main/java/caosdb/server/utils/Info.java b/src/main/java/org/caosdb/server/utils/Info.java similarity index 93% rename from src/main/java/caosdb/server/utils/Info.java rename to src/main/java/org/caosdb/server/utils/Info.java index bf85546d8303c072a322afcb9433c77eda928fec..19f792cf625765924f02a7b734f2e57849584ffc 100644 --- a/src/main/java/caosdb/server/utils/Info.java +++ b/src/main/java/org/caosdb/server/utils/Info.java @@ -20,24 +20,24 @@ * * ** end header */ -package caosdb.server.utils; - -import caosdb.server.CaosDBServer; -import caosdb.server.FileSystem; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.transaction.GetInfo; -import caosdb.server.database.backend.transaction.SyncStats; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.proto.ProtoInfo; -import caosdb.server.entity.Message; -import caosdb.server.transaction.TransactionInterface; +package org.caosdb.server.utils; + import java.io.File; import java.io.IOException; import java.sql.SQLException; import java.util.LinkedList; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.FileSystem; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.transaction.GetInfo; +import org.caosdb.server.database.backend.transaction.SyncStats; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.proto.ProtoInfo; +import org.caosdb.server.entity.Message; +import org.caosdb.server.transaction.TransactionInterface; import org.jdom2.Element; public class Info extends AbstractObservable implements Observer, TransactionInterface { diff --git a/src/main/java/caosdb/server/utils/Initialization.java b/src/main/java/org/caosdb/server/utils/Initialization.java similarity index 89% rename from src/main/java/caosdb/server/utils/Initialization.java rename to src/main/java/org/caosdb/server/utils/Initialization.java index 9f77fcf2992c0e7fb8de38ee334bebe8c93ef3d8..baae53804f57433aa58da1ae1b9c58060c3db160 100644 --- a/src/main/java/caosdb/server/utils/Initialization.java +++ b/src/main/java/org/caosdb/server/utils/Initialization.java @@ -22,11 +22,11 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; -import caosdb.server.database.DatabaseMonitor; -import caosdb.server.database.access.Access; -import caosdb.server.transaction.TransactionInterface; +import org.caosdb.server.database.DatabaseMonitor; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.transaction.TransactionInterface; public final class Initialization implements TransactionInterface, AutoCloseable { diff --git a/src/main/java/caosdb/server/utils/NullPrintStream.java b/src/main/java/org/caosdb/server/utils/NullPrintStream.java similarity index 97% rename from src/main/java/caosdb/server/utils/NullPrintStream.java rename to src/main/java/org/caosdb/server/utils/NullPrintStream.java index b6b7211b4493762473cad5a8a3edfa4bb89f6618..9256bdee5af75af1a141c2f1dbdbee54cf1b64e2 100644 --- a/src/main/java/caosdb/server/utils/NullPrintStream.java +++ b/src/main/java/org/caosdb/server/utils/NullPrintStream.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.io.PrintStream; import org.apache.commons.io.output.NullOutputStream; diff --git a/src/main/java/caosdb/server/utils/Observable.java b/src/main/java/org/caosdb/server/utils/Observable.java similarity index 96% rename from src/main/java/caosdb/server/utils/Observable.java rename to src/main/java/org/caosdb/server/utils/Observable.java index f75e040111eab3b32269897bc04f4e8bee1744c3..a43822eb9725232f068c6cdb26764994033366a3 100644 --- a/src/main/java/caosdb/server/utils/Observable.java +++ b/src/main/java/org/caosdb/server/utils/Observable.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public interface Observable { public boolean acceptObserver(Observer o); diff --git a/src/main/java/caosdb/server/utils/ObservableWrapper.java b/src/main/java/org/caosdb/server/utils/ObservableWrapper.java similarity index 97% rename from src/main/java/caosdb/server/utils/ObservableWrapper.java rename to src/main/java/org/caosdb/server/utils/ObservableWrapper.java index a7bdede91f528f847b193b326d559b79cbdf6a05..fa44bce9f003adae4ccba4bc364d5ed2e61f5de1 100644 --- a/src/main/java/caosdb/server/utils/ObservableWrapper.java +++ b/src/main/java/org/caosdb/server/utils/ObservableWrapper.java @@ -1,3 +1,4 @@ +package org.caosdb.server.utils; /* * ** header v3.0 * This file is a part of the CaosDB Project. diff --git a/src/main/java/caosdb/server/utils/Observer.java b/src/main/java/org/caosdb/server/utils/Observer.java similarity index 97% rename from src/main/java/caosdb/server/utils/Observer.java rename to src/main/java/org/caosdb/server/utils/Observer.java index bb1599d5f1ec4d248473d477e508cfc04200c90f..be89dff4b882adf24bcfd250c3dea1387997360d 100644 --- a/src/main/java/caosdb/server/utils/Observer.java +++ b/src/main/java/org/caosdb/server/utils/Observer.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public interface Observer { diff --git a/src/main/java/caosdb/server/utils/Releasable.java b/src/main/java/org/caosdb/server/utils/Releasable.java similarity index 96% rename from src/main/java/caosdb/server/utils/Releasable.java rename to src/main/java/org/caosdb/server/utils/Releasable.java index 36b293e0e46fbd16a7ac811e49f989e9e6c9ca7d..f81a029ae319af057c4bc06e3d0501b6eedbe38c 100644 --- a/src/main/java/caosdb/server/utils/Releasable.java +++ b/src/main/java/org/caosdb/server/utils/Releasable.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public interface Releasable { diff --git a/src/main/java/caosdb/server/utils/SHA512.java b/src/main/java/org/caosdb/server/utils/SHA512.java similarity index 97% rename from src/main/java/caosdb/server/utils/SHA512.java rename to src/main/java/org/caosdb/server/utils/SHA512.java index 07d56bd81435e36b0ddb4dbad16ec703f6d37a4f..a461d95ed9e38baf350b0ee53e059b10ee13a177 100644 --- a/src/main/java/caosdb/server/utils/SHA512.java +++ b/src/main/java/org/caosdb/server/utils/SHA512.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.io.File; import java.io.IOException; diff --git a/src/main/java/caosdb/server/utils/Serializer.java b/src/main/java/org/caosdb/server/utils/Serializer.java similarity index 96% rename from src/main/java/caosdb/server/utils/Serializer.java rename to src/main/java/org/caosdb/server/utils/Serializer.java index 26cd970c54d2bc4efcb7742ab9405a717e3ef112..c58ca23ebfd439e5681289e451da5651d459abc7 100644 --- a/src/main/java/caosdb/server/utils/Serializer.java +++ b/src/main/java/org/caosdb/server/utils/Serializer.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public interface Serializer<T, S> { diff --git a/src/main/java/caosdb/server/utils/ServerMessages.java b/src/main/java/org/caosdb/server/utils/ServerMessages.java similarity index 98% rename from src/main/java/caosdb/server/utils/ServerMessages.java rename to src/main/java/org/caosdb/server/utils/ServerMessages.java index 29983924246f5bc5987ffdbfeaf949d0946c7f16..2801218aa47a18ec1494ee8ef76607eb9b962130 100644 --- a/src/main/java/caosdb/server/utils/ServerMessages.java +++ b/src/main/java/org/caosdb/server/utils/ServerMessages.java @@ -17,12 +17,12 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.entity.Message; -import caosdb.server.entity.Message.MessageType; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.entity.Message.MessageType; public class ServerMessages { diff --git a/src/main/java/caosdb/server/utils/ServerStat.java b/src/main/java/org/caosdb/server/utils/ServerStat.java similarity index 96% rename from src/main/java/caosdb/server/utils/ServerStat.java rename to src/main/java/org/caosdb/server/utils/ServerStat.java index c0b95d790cd724cddb0af4a934eac7a60047d13a..8b5526335208f07b084e8d61e5d4244b3c235da2 100644 --- a/src/main/java/caosdb/server/utils/ServerStat.java +++ b/src/main/java/org/caosdb/server/utils/ServerStat.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.io.Serializable; diff --git a/src/main/java/caosdb/server/utils/TransactionLogMessage.java b/src/main/java/org/caosdb/server/utils/TransactionLogMessage.java similarity index 94% rename from src/main/java/caosdb/server/utils/TransactionLogMessage.java rename to src/main/java/org/caosdb/server/utils/TransactionLogMessage.java index fbc5e7c05c0a5812ed33879ad0ebcfb6c11dae57..368e09085fce6cc77ac703cd7e2f51f9f4f32d22 100644 --- a/src/main/java/caosdb/server/utils/TransactionLogMessage.java +++ b/src/main/java/org/caosdb/server/utils/TransactionLogMessage.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; -import caosdb.datetime.UTCDateTime; -import caosdb.server.entity.EntityInterface; import java.util.TimeZone; +import org.caosdb.datetime.UTCDateTime; +import org.caosdb.server.entity.EntityInterface; import org.jdom2.Element; public class TransactionLogMessage { diff --git a/src/main/java/caosdb/server/utils/UncloseableOutputStream.java b/src/main/java/org/caosdb/server/utils/UncloseableOutputStream.java similarity index 97% rename from src/main/java/caosdb/server/utils/UncloseableOutputStream.java rename to src/main/java/org/caosdb/server/utils/UncloseableOutputStream.java index 1918c9c8130fecab0906d7cc34ffd1fa32e0d3d7..3f70f2826cbed4547282d2e809ccdaa0068e3ebe 100644 --- a/src/main/java/caosdb/server/utils/UncloseableOutputStream.java +++ b/src/main/java/org/caosdb/server/utils/UncloseableOutputStream.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.io.IOException; import java.io.OutputStream; diff --git a/src/main/java/caosdb/server/utils/UndoHandler.java b/src/main/java/org/caosdb/server/utils/UndoHandler.java similarity index 98% rename from src/main/java/caosdb/server/utils/UndoHandler.java rename to src/main/java/org/caosdb/server/utils/UndoHandler.java index d5c2806f7fa12ad2a223eb99dd17adf569779203..2102784711a1ebd5e879d1562eda26715a19f6b2 100644 --- a/src/main/java/caosdb/server/utils/UndoHandler.java +++ b/src/main/java/org/caosdb/server/utils/UndoHandler.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import java.util.ArrayDeque; import java.util.Deque; diff --git a/src/main/java/caosdb/server/utils/Undoable.java b/src/main/java/org/caosdb/server/utils/Undoable.java similarity index 96% rename from src/main/java/caosdb/server/utils/Undoable.java rename to src/main/java/org/caosdb/server/utils/Undoable.java index 2a1d3c1c5234ecc34d3bbf02b5e0e8bf0bed84d2..2bbbcb17abf77556cbc6160cfe60335364c61de3 100644 --- a/src/main/java/caosdb/server/utils/Undoable.java +++ b/src/main/java/org/caosdb/server/utils/Undoable.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; public interface Undoable { diff --git a/src/main/java/caosdb/server/utils/Utils.java b/src/main/java/org/caosdb/server/utils/Utils.java similarity index 99% rename from src/main/java/caosdb/server/utils/Utils.java rename to src/main/java/org/caosdb/server/utils/Utils.java index 752d828d0e89e790aa7d42e1358b91d3fb5f3c1b..b21ba0f550e1f855ca21e26c1cfd04bb75107223 100644 --- a/src/main/java/caosdb/server/utils/Utils.java +++ b/src/main/java/org/caosdb/server/utils/Utils.java @@ -20,12 +20,11 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import static java.net.URLDecoder.decode; import static java.net.URLEncoder.encode; -import caosdb.server.entity.Message; import java.io.ByteArrayInputStream; import java.io.InputStream; import java.io.UnsupportedEncodingException; @@ -36,6 +35,7 @@ import java.text.DecimalFormat; import java.util.Scanner; import java.util.regex.Pattern; import org.apache.commons.codec.binary.Base32; +import org.caosdb.server.entity.Message; import org.jdom2.Document; import org.jdom2.Element; import org.jdom2.output.Format; diff --git a/src/main/java/caosdb/server/utils/WebinterfaceUtils.java b/src/main/java/org/caosdb/server/utils/WebinterfaceUtils.java similarity index 97% rename from src/main/java/caosdb/server/utils/WebinterfaceUtils.java rename to src/main/java/org/caosdb/server/utils/WebinterfaceUtils.java index 2fef9ecaa4972bb12ddfccae4df3f57f493bbe08..1aff4de329bf3f32ba599a449c101b7fbe30423f 100644 --- a/src/main/java/caosdb/server/utils/WebinterfaceUtils.java +++ b/src/main/java/org/caosdb/server/utils/WebinterfaceUtils.java @@ -16,12 +16,8 @@ * * <p>** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.resource.AbstractCaosDBServerResource; -import caosdb.server.resource.Webinterface; import java.io.File; import java.io.IOException; import java.nio.charset.StandardCharsets; @@ -33,6 +29,10 @@ import java.util.Map; import java.util.stream.Stream; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.resource.AbstractCaosDBServerResource; +import org.caosdb.server.resource.Webinterface; import org.restlet.data.Reference; /** diff --git a/src/main/java/caosdb/server/utils/fsm/ActionNotAllowedException.java b/src/main/java/org/caosdb/server/utils/fsm/ActionNotAllowedException.java similarity index 97% rename from src/main/java/caosdb/server/utils/fsm/ActionNotAllowedException.java rename to src/main/java/org/caosdb/server/utils/fsm/ActionNotAllowedException.java index eedd272c5d18fae84dd17b1f2eec0e24aa0730e9..950136aa0384221fcd214c0b090131adc0393c1a 100644 --- a/src/main/java/caosdb/server/utils/fsm/ActionNotAllowedException.java +++ b/src/main/java/org/caosdb/server/utils/fsm/ActionNotAllowedException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; public class ActionNotAllowedException extends RuntimeException { diff --git a/src/main/java/caosdb/server/utils/fsm/FiniteStateMachine.java b/src/main/java/org/caosdb/server/utils/fsm/FiniteStateMachine.java similarity index 98% rename from src/main/java/caosdb/server/utils/fsm/FiniteStateMachine.java rename to src/main/java/org/caosdb/server/utils/fsm/FiniteStateMachine.java index 7439d95a1820c91e93290b805de4fa0bdb31c273..f8bdccac726bfe25d7644f6dc689b54113f981c7 100644 --- a/src/main/java/caosdb/server/utils/fsm/FiniteStateMachine.java +++ b/src/main/java/org/caosdb/server/utils/fsm/FiniteStateMachine.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; import java.util.List; import java.util.Map; diff --git a/src/main/java/caosdb/server/utils/fsm/MissingImplementationException.java b/src/main/java/org/caosdb/server/utils/fsm/MissingImplementationException.java similarity index 96% rename from src/main/java/caosdb/server/utils/fsm/MissingImplementationException.java rename to src/main/java/org/caosdb/server/utils/fsm/MissingImplementationException.java index 761abf2fe7d8e45438ae06717d7de63ac56afb45..5984283d20d99d467114d537a3f30de7b0c0d6e3 100644 --- a/src/main/java/caosdb/server/utils/fsm/MissingImplementationException.java +++ b/src/main/java/org/caosdb/server/utils/fsm/MissingImplementationException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; public class MissingImplementationException extends Exception { diff --git a/src/main/java/caosdb/server/utils/fsm/State.java b/src/main/java/org/caosdb/server/utils/fsm/State.java similarity index 96% rename from src/main/java/caosdb/server/utils/fsm/State.java rename to src/main/java/org/caosdb/server/utils/fsm/State.java index 66073d4d6b2e092d24cf94a18d73216d461f53c9..81b76aa599a90de2c8b3c8ddd295e62ce47dae12 100644 --- a/src/main/java/caosdb/server/utils/fsm/State.java +++ b/src/main/java/org/caosdb/server/utils/fsm/State.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; import java.util.List; diff --git a/src/main/java/caosdb/server/utils/fsm/StateNotReachableException.java b/src/main/java/org/caosdb/server/utils/fsm/StateNotReachableException.java similarity index 96% rename from src/main/java/caosdb/server/utils/fsm/StateNotReachableException.java rename to src/main/java/org/caosdb/server/utils/fsm/StateNotReachableException.java index 9dbafcd940d5d07bc89d0aa110a39224a760c340..db0576788423b419051cfca6c78115fbdaf808ce 100644 --- a/src/main/java/caosdb/server/utils/fsm/StateNotReachableException.java +++ b/src/main/java/org/caosdb/server/utils/fsm/StateNotReachableException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; public class StateNotReachableException extends Exception { diff --git a/src/main/java/caosdb/server/utils/fsm/StrategyFiniteStateMachine.java b/src/main/java/org/caosdb/server/utils/fsm/StrategyFiniteStateMachine.java similarity index 98% rename from src/main/java/caosdb/server/utils/fsm/StrategyFiniteStateMachine.java rename to src/main/java/org/caosdb/server/utils/fsm/StrategyFiniteStateMachine.java index ad5d50dc49d9e0feca0586ccfdb620c26b5d483d..d37d83783bd7f4aaa1db573f76315d0b51bd5fbb 100644 --- a/src/main/java/caosdb/server/utils/fsm/StrategyFiniteStateMachine.java +++ b/src/main/java/org/caosdb/server/utils/fsm/StrategyFiniteStateMachine.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; import java.util.Map; diff --git a/src/main/java/caosdb/server/utils/fsm/Transition.java b/src/main/java/org/caosdb/server/utils/fsm/Transition.java similarity index 96% rename from src/main/java/caosdb/server/utils/fsm/Transition.java rename to src/main/java/org/caosdb/server/utils/fsm/Transition.java index 432adc17b9e1c664b95c0e85f4f6918793bf39ae..41921b76cfc7ceed6e396551807e4b199486f0cf 100644 --- a/src/main/java/caosdb/server/utils/fsm/Transition.java +++ b/src/main/java/org/caosdb/server/utils/fsm/Transition.java @@ -20,6 +20,6 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; public interface Transition {} diff --git a/src/main/java/caosdb/server/utils/fsm/TransitionNotAllowedException.java b/src/main/java/org/caosdb/server/utils/fsm/TransitionNotAllowedException.java similarity index 97% rename from src/main/java/caosdb/server/utils/fsm/TransitionNotAllowedException.java rename to src/main/java/org/caosdb/server/utils/fsm/TransitionNotAllowedException.java index e5b56f7f55438b1b40ee153c65eeafc60e959448..0b831dfb52afb412330783192845c1f2add7da93 100644 --- a/src/main/java/caosdb/server/utils/fsm/TransitionNotAllowedException.java +++ b/src/main/java/org/caosdb/server/utils/fsm/TransitionNotAllowedException.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; public class TransitionNotAllowedException extends Exception { diff --git a/src/main/java/caosdb/server/utils/mail/Mail.java b/src/main/java/org/caosdb/server/utils/mail/Mail.java similarity index 96% rename from src/main/java/caosdb/server/utils/mail/Mail.java rename to src/main/java/org/caosdb/server/utils/mail/Mail.java index c2036f909009a5ac0f294c6b0abed572e2d45790..36588fc1b3611efad17b80c9122208aa2292870f 100644 --- a/src/main/java/caosdb/server/utils/mail/Mail.java +++ b/src/main/java/org/caosdb/server/utils/mail/Mail.java @@ -20,11 +20,11 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import java.util.Date; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; public class Mail { diff --git a/src/main/java/caosdb/server/utils/mail/MailFormatter.java b/src/main/java/org/caosdb/server/utils/mail/MailFormatter.java similarity index 96% rename from src/main/java/caosdb/server/utils/mail/MailFormatter.java rename to src/main/java/org/caosdb/server/utils/mail/MailFormatter.java index 31ff4777d3c9969f36d1c03512f7c9059d8c0fcf..2e31724d32527a3f171285513b2014be123e0921 100644 --- a/src/main/java/caosdb/server/utils/mail/MailFormatter.java +++ b/src/main/java/org/caosdb/server/utils/mail/MailFormatter.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; public interface MailFormatter { diff --git a/src/main/java/caosdb/server/utils/mail/MailHandler.java b/src/main/java/org/caosdb/server/utils/mail/MailHandler.java similarity index 96% rename from src/main/java/caosdb/server/utils/mail/MailHandler.java rename to src/main/java/org/caosdb/server/utils/mail/MailHandler.java index 24395e5935f8bb8887a23f16c95b74fc07a15b90..ebdf88dad42028c223784501216002cb5f5196a9 100644 --- a/src/main/java/caosdb/server/utils/mail/MailHandler.java +++ b/src/main/java/org/caosdb/server/utils/mail/MailHandler.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; public interface MailHandler { diff --git a/src/main/java/caosdb/server/utils/mail/Mailable.java b/src/main/java/org/caosdb/server/utils/mail/Mailable.java similarity index 96% rename from src/main/java/caosdb/server/utils/mail/Mailable.java rename to src/main/java/org/caosdb/server/utils/mail/Mailable.java index 6a2362c75b0ba10dc09358fc64d15aa807e45979..fc679aac61afee3cc8d5d47610a6c84ed0be36c0 100644 --- a/src/main/java/caosdb/server/utils/mail/Mailable.java +++ b/src/main/java/org/caosdb/server/utils/mail/Mailable.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; public interface Mailable { diff --git a/src/main/java/caosdb/server/utils/mail/SendMailHandler.java b/src/main/java/org/caosdb/server/utils/mail/SendMailHandler.java similarity index 97% rename from src/main/java/caosdb/server/utils/mail/SendMailHandler.java rename to src/main/java/org/caosdb/server/utils/mail/SendMailHandler.java index fdf060e6f12a5f7939252e968bfe070c788b01b8..88a487c5b02ed9279520d5584fc13582e967a770 100644 --- a/src/main/java/caosdb/server/utils/mail/SendMailHandler.java +++ b/src/main/java/org/caosdb/server/utils/mail/SendMailHandler.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; import java.io.BufferedWriter; import java.io.IOException; diff --git a/src/main/java/caosdb/server/utils/mail/SimpleMailFormatter.java b/src/main/java/org/caosdb/server/utils/mail/SimpleMailFormatter.java similarity index 98% rename from src/main/java/caosdb/server/utils/mail/SimpleMailFormatter.java rename to src/main/java/org/caosdb/server/utils/mail/SimpleMailFormatter.java index 0241c13304b3f2e9b632033d8f0fafe1a6500a87..c1d5ce6b9967c41f82ecf24539f435af87a0899c 100644 --- a/src/main/java/caosdb/server/utils/mail/SimpleMailFormatter.java +++ b/src/main/java/org/caosdb/server/utils/mail/SimpleMailFormatter.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; import javax.mail.internet.MailDateFormat; diff --git a/src/main/java/caosdb/server/utils/mail/ToFileHandler.java b/src/main/java/org/caosdb/server/utils/mail/ToFileHandler.java similarity index 94% rename from src/main/java/caosdb/server/utils/mail/ToFileHandler.java rename to src/main/java/org/caosdb/server/utils/mail/ToFileHandler.java index 8a7a012bc6e2f5b9dbf02ca9286c2c2c5ee3c6d5..24a6da787925a352b2675edf3000ad7f5d1f8dbb 100644 --- a/src/main/java/caosdb/server/utils/mail/ToFileHandler.java +++ b/src/main/java/org/caosdb/server/utils/mail/ToFileHandler.java @@ -20,15 +20,15 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import java.io.File; import java.io.FileNotFoundException; import java.io.FileOutputStream; import java.io.IOException; import java.io.PrintWriter; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; public class ToFileHandler implements MailHandler { diff --git a/src/main/java/caosdb/unit/CaosDBSystemOfUnits.java b/src/main/java/org/caosdb/unit/CaosDBSystemOfUnits.java similarity index 99% rename from src/main/java/caosdb/unit/CaosDBSystemOfUnits.java rename to src/main/java/org/caosdb/unit/CaosDBSystemOfUnits.java index be7d5a0e023b21966feac0e590d848c1c67fcd4b..ed78c5cf41225ddc7adb36869a779d1c4ec57d67 100644 --- a/src/main/java/caosdb/unit/CaosDBSystemOfUnits.java +++ b/src/main/java/org/caosdb/unit/CaosDBSystemOfUnits.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; import de.timmfitschen.easyunits.BaseUnit; import de.timmfitschen.easyunits.DefaultSystemOfUnitsFactory; diff --git a/src/main/java/caosdb/unit/Converter.java b/src/main/java/org/caosdb/unit/Converter.java similarity index 97% rename from src/main/java/caosdb/unit/Converter.java rename to src/main/java/org/caosdb/unit/Converter.java index db42c12e4bb3ece5291e90b4f013184223b94d14..dfe63477d9c3e9639a58845b8034028befb039bb 100644 --- a/src/main/java/caosdb/unit/Converter.java +++ b/src/main/java/org/caosdb/unit/Converter.java @@ -20,6 +20,6 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; public interface Converter {} diff --git a/src/main/java/caosdb/unit/LinearConverter.java b/src/main/java/org/caosdb/unit/LinearConverter.java similarity index 97% rename from src/main/java/caosdb/unit/LinearConverter.java rename to src/main/java/org/caosdb/unit/LinearConverter.java index 7d792d220f3ca878b002c045e3f0f3b0b9a4c3dc..8eac2d7e07dbe9f1594b368968b06d00034ea95e 100644 --- a/src/main/java/caosdb/unit/LinearConverter.java +++ b/src/main/java/org/caosdb/unit/LinearConverter.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; public interface LinearConverter extends Converter { diff --git a/src/main/java/caosdb/unit/Unit.java b/src/main/java/org/caosdb/unit/Unit.java similarity index 97% rename from src/main/java/caosdb/unit/Unit.java rename to src/main/java/org/caosdb/unit/Unit.java index d816369b105e4e0b5a7cffd994c4873bb101d046..9e676773013f30d5aa30b60a1357a130f3c5a941 100644 --- a/src/main/java/caosdb/unit/Unit.java +++ b/src/main/java/org/caosdb/unit/Unit.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; public interface Unit { diff --git a/src/main/java/caosdb/unit/UnknownUnit.java b/src/main/java/org/caosdb/unit/UnknownUnit.java similarity index 97% rename from src/main/java/caosdb/unit/UnknownUnit.java rename to src/main/java/org/caosdb/unit/UnknownUnit.java index 592b78a2673aee7720892952eb5c119bf5f7235c..70ad3546ece269efbdc224b7d6d12f9448a21938 100644 --- a/src/main/java/caosdb/unit/UnknownUnit.java +++ b/src/main/java/org/caosdb/unit/UnknownUnit.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; public class UnknownUnit extends WrappedUnit implements Unit { diff --git a/src/main/java/caosdb/unit/WrappedConverter.java b/src/main/java/org/caosdb/unit/WrappedConverter.java similarity index 97% rename from src/main/java/caosdb/unit/WrappedConverter.java rename to src/main/java/org/caosdb/unit/WrappedConverter.java index 91868cc36c9a07ba688f8b9a40896de6d07d89c1..f23be0394daa4a680e642a3d5f018e8b21db4235 100644 --- a/src/main/java/caosdb/unit/WrappedConverter.java +++ b/src/main/java/org/caosdb/unit/WrappedConverter.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; public class WrappedConverter implements Converter { diff --git a/src/main/java/caosdb/unit/WrappedLinearConverter.java b/src/main/java/org/caosdb/unit/WrappedLinearConverter.java similarity index 99% rename from src/main/java/caosdb/unit/WrappedLinearConverter.java rename to src/main/java/org/caosdb/unit/WrappedLinearConverter.java index de9590c391e96706666acdea298a2115d672e58c..b90b32ccee7395800f62ad91cdc960c4b93d0813 100644 --- a/src/main/java/caosdb/unit/WrappedLinearConverter.java +++ b/src/main/java/org/caosdb/unit/WrappedLinearConverter.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; import java.text.DecimalFormat; import java.text.DecimalFormatSymbols; diff --git a/src/main/java/caosdb/unit/WrappedUnit.java b/src/main/java/org/caosdb/unit/WrappedUnit.java similarity index 98% rename from src/main/java/caosdb/unit/WrappedUnit.java rename to src/main/java/org/caosdb/unit/WrappedUnit.java index b5f5eb8beb0e7c9ea990484695a33460fb04d7bd..c29ee5b5853423d14cd602c393c779673f6b0ed4 100644 --- a/src/main/java/caosdb/unit/WrappedUnit.java +++ b/src/main/java/org/caosdb/unit/WrappedUnit.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.unit; +package org.caosdb.unit; import de.timmfitschen.easyunits.conversion.LinearConverter; diff --git a/src/test/java/caosdb/CaosDBTestClass.java b/src/test/java/org/caosdb/CaosDBTestClass.java similarity index 98% rename from src/test/java/caosdb/CaosDBTestClass.java rename to src/test/java/org/caosdb/CaosDBTestClass.java index 6b894c75b097b4aa324a432b6338f84a0527f84c..d22f9ade8ed43b5e44e505b70e7d2b1d704e211b 100644 --- a/src/test/java/caosdb/CaosDBTestClass.java +++ b/src/test/java/org/caosdb/CaosDBTestClass.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb; +package org.caosdb; import java.io.File; import java.io.IOException; diff --git a/src/test/java/caosdb/datetime/DateTimeTest.java b/src/test/java/org/caosdb/datetime/DateTimeTest.java similarity index 99% rename from src/test/java/caosdb/datetime/DateTimeTest.java rename to src/test/java/org/caosdb/datetime/DateTimeTest.java index 032ab240eaa083d63acdd033431b6f0d2cfcdfd9..81e0edf748432daf8c023b421b6119a3bf14f2d4 100644 --- a/src/test/java/caosdb/datetime/DateTimeTest.java +++ b/src/test/java/org/caosdb/datetime/DateTimeTest.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.datetime; +package org.caosdb.datetime; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNull; import static org.junit.Assert.assertTrue; -import caosdb.server.CaosDBServer; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; import java.io.IOException; import java.sql.SQLException; import java.sql.Timestamp; import java.time.ZoneId; import java.util.GregorianCalendar; import java.util.TimeZone; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; import org.junit.Assert; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/Misc.java b/src/test/java/org/caosdb/server/Misc.java similarity index 97% rename from src/test/java/caosdb/server/Misc.java rename to src/test/java/org/caosdb/server/Misc.java index 2988bae6aa178ace45f41e03da5c54f08114e485..f6d1364644d803abf194532471f9e1775fa990de 100644 --- a/src/test/java/caosdb/server/Misc.java +++ b/src/test/java/org/caosdb/server/Misc.java @@ -20,16 +20,13 @@ * * ** end header */ -package caosdb.server; +package org.caosdb.server; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertNull; import static org.junit.Assert.assertTrue; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.jobs.core.CheckFileStorageConsistency; -import caosdb.server.utils.CronJob; import java.io.File; import java.io.FileInputStream; import java.io.FileOutputStream; @@ -40,6 +37,9 @@ import java.util.regex.Matcher; import java.util.regex.Pattern; import org.apache.shiro.SecurityUtils; import org.apache.shiro.subject.Subject; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.jobs.core.CheckFileStorageConsistency; +import org.caosdb.server.utils.CronJob; import org.junit.Assert; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/accessControl/TestDefaultPamScriptCaller.java b/src/test/java/org/caosdb/server/accessControl/TestDefaultPamScriptCaller.java similarity index 98% rename from src/test/java/caosdb/server/accessControl/TestDefaultPamScriptCaller.java rename to src/test/java/org/caosdb/server/accessControl/TestDefaultPamScriptCaller.java index bb207aadcdef6ba9fdeecc2b0f32cd9f70a50512..21197f4fa430283898c87741df4c765b28152f33 100644 --- a/src/test/java/caosdb/server/accessControl/TestDefaultPamScriptCaller.java +++ b/src/test/java/org/caosdb/server/accessControl/TestDefaultPamScriptCaller.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.accessControl; +package org.caosdb.server.accessControl; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; diff --git a/src/test/java/caosdb/server/authentication/AuthTokenTest.java b/src/test/java/org/caosdb/server/authentication/AuthTokenTest.java similarity index 92% rename from src/test/java/caosdb/server/authentication/AuthTokenTest.java rename to src/test/java/org/caosdb/server/authentication/AuthTokenTest.java index 9f344889051d8508125dc5f6417d40839c44bd3d..ca19603230bf6aa989c495fbadabd0989c2a9790 100644 --- a/src/test/java/caosdb/server/authentication/AuthTokenTest.java +++ b/src/test/java/org/caosdb/server/authentication/AuthTokenTest.java @@ -20,30 +20,11 @@ * * ** end header */ -package caosdb.server.authentication; +package org.caosdb.server.authentication; import static org.junit.Assert.assertArrayEquals; import static org.junit.Assert.assertEquals; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.accessControl.AnonymousAuthenticationToken; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.accessControl.Config; -import caosdb.server.accessControl.OneTimeAuthenticationToken; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.SelfValidatingAuthenticationToken; -import caosdb.server.accessControl.SessionToken; -import caosdb.server.accessControl.SessionTokenRealm; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; -import caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; -import caosdb.server.database.backend.interfaces.RetrieveRoleImpl; -import caosdb.server.database.backend.interfaces.RetrieveUserImpl; -import caosdb.server.resource.TestScriptingResource.RetrievePasswordValidator; -import caosdb.server.resource.TestScriptingResource.RetrievePermissionRules; -import caosdb.server.resource.TestScriptingResource.RetrieveRole; -import caosdb.server.resource.TestScriptingResource.RetrieveUser; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectReader; import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; @@ -57,6 +38,25 @@ import org.apache.commons.io.input.CharSequenceInputStream; import org.apache.shiro.SecurityUtils; import org.apache.shiro.authc.AuthenticationException; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.accessControl.AnonymousAuthenticationToken; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.accessControl.Config; +import org.caosdb.server.accessControl.OneTimeAuthenticationToken; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.SelfValidatingAuthenticationToken; +import org.caosdb.server.accessControl.SessionToken; +import org.caosdb.server.accessControl.SessionTokenRealm; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; +import org.caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveRoleImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveUserImpl; +import org.caosdb.server.resource.TestScriptingResource.RetrievePasswordValidator; +import org.caosdb.server.resource.TestScriptingResource.RetrievePermissionRules; +import org.caosdb.server.resource.TestScriptingResource.RetrieveRole; +import org.caosdb.server.resource.TestScriptingResource.RetrieveUser; import org.junit.Assert; import org.junit.Before; import org.junit.BeforeClass; diff --git a/src/test/java/caosdb/server/caching/TestCaching.java b/src/test/java/org/caosdb/server/caching/TestCaching.java similarity index 89% rename from src/test/java/caosdb/server/caching/TestCaching.java rename to src/test/java/org/caosdb/server/caching/TestCaching.java index 56d8e750ab75663e29808a0f97962df88006d080..40387790b369a711ff95668821cbe4e64d813150 100644 --- a/src/test/java/caosdb/server/caching/TestCaching.java +++ b/src/test/java/org/caosdb/server/caching/TestCaching.java @@ -1,14 +1,14 @@ -package caosdb.server.caching; +package org.caosdb.server.caching; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertSame; -import caosdb.server.CaosDBServer; -import caosdb.server.accessControl.Pam; -import caosdb.server.database.backend.transaction.RetrieveProperties; import java.io.IOException; import org.apache.commons.jcs.JCS; import org.apache.commons.jcs.access.CacheAccess; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.accessControl.Pam; +import org.caosdb.server.database.backend.transaction.RetrieveProperties; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/caching/TestNoCaching.java b/src/test/java/org/caosdb/server/caching/TestNoCaching.java similarity index 78% rename from src/test/java/caosdb/server/caching/TestNoCaching.java rename to src/test/java/org/caosdb/server/caching/TestNoCaching.java index dfab9de67b8c79871b6d2fd70fc6e25a1c231230..bcd2f08f128fe58de760ec9e1abca2b0837e7136 100644 --- a/src/test/java/caosdb/server/caching/TestNoCaching.java +++ b/src/test/java/org/caosdb/server/caching/TestNoCaching.java @@ -1,13 +1,13 @@ -package caosdb.server.caching; +package org.caosdb.server.caching; import static org.junit.Assert.assertEquals; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.database.backend.transaction.RetrieveProperties; import java.io.IOException; import org.apache.commons.jcs.JCS; import org.apache.commons.jcs.access.CacheAccess; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.database.backend.transaction.RetrieveProperties; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/database/DatabaseMonitorTest.java b/src/test/java/org/caosdb/server/database/DatabaseMonitorTest.java similarity index 99% rename from src/test/java/caosdb/server/database/DatabaseMonitorTest.java rename to src/test/java/org/caosdb/server/database/DatabaseMonitorTest.java index 20f2cdf64ca6d17ab1ea9ec40d6e20a942595ce5..554baec079ed17d332dff47f0afb57405913dc33 100644 --- a/src/test/java/caosdb/server/database/DatabaseMonitorTest.java +++ b/src/test/java/org/caosdb/server/database/DatabaseMonitorTest.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.database; +package org.caosdb.server.database; import org.junit.Assert; import org.junit.Test; diff --git a/src/test/java/caosdb/server/database/InsertTest.java b/src/test/java/org/caosdb/server/database/InsertTest.java similarity index 96% rename from src/test/java/caosdb/server/database/InsertTest.java rename to src/test/java/org/caosdb/server/database/InsertTest.java index 70fef365c6c88699b5c566ea48c0de2a1c631fa5..7b00cacfe7c3454539cb6823d62bc3af9b4d7ce7 100644 --- a/src/test/java/caosdb/server/database/InsertTest.java +++ b/src/test/java/org/caosdb/server/database/InsertTest.java @@ -20,23 +20,23 @@ * * ** end header */ -package caosdb.server.database; +package org.caosdb.server.database; -import static caosdb.server.database.DatabaseUtils.deriveStage1Inserts; -import static caosdb.server.database.DatabaseUtils.deriveStage2Inserts; +import static org.caosdb.server.database.DatabaseUtils.deriveStage1Inserts; +import static org.caosdb.server.database.DatabaseUtils.deriveStage2Inserts; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; -import caosdb.server.datatype.CollectionValue; -import caosdb.server.datatype.GenericValue; -import caosdb.server.datatype.SingleValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Role; -import caosdb.server.entity.StatementStatus; -import caosdb.server.entity.wrapper.Property; import java.util.LinkedList; +import org.caosdb.server.datatype.CollectionValue; +import org.caosdb.server.datatype.GenericValue; +import org.caosdb.server.datatype.SingleValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.entity.wrapper.Property; import org.junit.Test; public class InsertTest { diff --git a/src/test/java/caosdb/server/database/backend/transaction/RetrieveFullEntityTest.java b/src/test/java/org/caosdb/server/database/backend/transaction/RetrieveFullEntityTest.java similarity index 87% rename from src/test/java/caosdb/server/database/backend/transaction/RetrieveFullEntityTest.java rename to src/test/java/org/caosdb/server/database/backend/transaction/RetrieveFullEntityTest.java index 78c2ae8206fbe5aac33ee4d9d9d73b2fae5965ef..52b4c951d939f097258ec40ed16b6fd99784f9bd 100644 --- a/src/test/java/caosdb/server/database/backend/transaction/RetrieveFullEntityTest.java +++ b/src/test/java/org/caosdb/server/database/backend/transaction/RetrieveFullEntityTest.java @@ -20,20 +20,20 @@ * * ** end header */ -package caosdb.server.database.backend.transaction; +package org.caosdb.server.database.backend.transaction; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertNull; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.entity.xml.PropertyToElementStrategyTest; -import caosdb.server.query.Query.Selection; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.entity.xml.PropertyToElementStrategyTest; +import org.caosdb.server.query.Query.Selection; import org.junit.Test; public class RetrieveFullEntityTest { diff --git a/src/test/java/caosdb/server/database/backend/transactions/TestGetAllNames.java b/src/test/java/org/caosdb/server/database/backend/transactions/TestGetAllNames.java similarity index 73% rename from src/test/java/caosdb/server/database/backend/transactions/TestGetAllNames.java rename to src/test/java/org/caosdb/server/database/backend/transactions/TestGetAllNames.java index 1c67d5cba56cd3bfb1516788a0187f9bc673f5e6..73d434218dcd0962d31a798af510277708cf1a32 100644 --- a/src/test/java/caosdb/server/database/backend/transactions/TestGetAllNames.java +++ b/src/test/java/org/caosdb/server/database/backend/transactions/TestGetAllNames.java @@ -1,18 +1,18 @@ -package caosdb.server.database.backend.transactions; +package org.caosdb.server.database.backend.transactions; import static org.junit.Assert.assertEquals; -import caosdb.server.CaosDBServer; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.GetAllNamesImpl; -import caosdb.server.database.backend.transaction.GetAllNames; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.database.proto.SparseEntity; -import caosdb.server.entity.EntityInterface; import java.io.IOException; import java.util.ArrayList; import java.util.List; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.GetAllNamesImpl; +import org.caosdb.server.database.backend.transaction.GetAllNames; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.database.proto.SparseEntity; +import org.caosdb.server.entity.EntityInterface; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/datatype/testBoolean.java b/src/test/java/org/caosdb/server/datatype/testBoolean.java similarity index 95% rename from src/test/java/caosdb/server/datatype/testBoolean.java rename to src/test/java/org/caosdb/server/datatype/testBoolean.java index 3e20830e9261c70fa3ead33e34d12ed1e9fc2f25..acf0578a332bb4ef21e1ff9eecce4037fc78540c 100644 --- a/src/test/java/caosdb/server/datatype/testBoolean.java +++ b/src/test/java/org/caosdb/server/datatype/testBoolean.java @@ -20,16 +20,16 @@ * * ** end header */ -package caosdb.server.datatype; +package org.caosdb.server.datatype; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; -import caosdb.server.datatype.AbstractDatatype.Table; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; +import org.caosdb.server.datatype.AbstractDatatype.Table; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; import org.junit.Test; public class testBoolean { diff --git a/src/test/java/caosdb/server/entity/SelectionTest.java b/src/test/java/org/caosdb/server/entity/SelectionTest.java similarity index 98% rename from src/test/java/caosdb/server/entity/SelectionTest.java rename to src/test/java/org/caosdb/server/entity/SelectionTest.java index 068a87c48a0257925d120613f83b4741173873d1..0ede3a970be6504ef0a89868aed40e4cadb141d0 100644 --- a/src/test/java/caosdb/server/entity/SelectionTest.java +++ b/src/test/java/org/caosdb/server/entity/SelectionTest.java @@ -22,17 +22,17 @@ * * ** end header */ -package caosdb.server.entity; +package org.caosdb.server.entity; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; -import caosdb.server.CaosDBServer; -import caosdb.server.entity.xml.SetFieldStrategy; -import caosdb.server.query.Query; -import caosdb.server.query.Query.Selection; import java.io.IOException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.query.Query; +import org.caosdb.server.query.Query.Selection; import org.junit.Assert; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/entity/container/PropertyContainerTest.java b/src/test/java/org/caosdb/server/entity/container/PropertyContainerTest.java similarity index 86% rename from src/test/java/caosdb/server/entity/container/PropertyContainerTest.java rename to src/test/java/org/caosdb/server/entity/container/PropertyContainerTest.java index 0678e83072a4f6f3f93aacb8a9f4196d5a566c2e..0428af146f7b4a191fa6be679e01af45aff315f2 100644 --- a/src/test/java/caosdb/server/entity/container/PropertyContainerTest.java +++ b/src/test/java/org/caosdb/server/entity/container/PropertyContainerTest.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.entity.container; +package org.caosdb.server.entity.container; import static org.junit.Assert.assertEquals; -import caosdb.server.datatype.GenericValue; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.Role; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.entity.xml.PropertyToElementStrategyTest; -import caosdb.server.entity.xml.SetFieldStrategy; +import org.caosdb.server.datatype.GenericValue; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.entity.xml.PropertyToElementStrategyTest; +import org.caosdb.server.entity.xml.SetFieldStrategy; import org.jdom2.Element; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/entity/xml/PropertyToElementStrategyTest.java b/src/test/java/org/caosdb/server/entity/xml/PropertyToElementStrategyTest.java similarity index 91% rename from src/test/java/caosdb/server/entity/xml/PropertyToElementStrategyTest.java rename to src/test/java/org/caosdb/server/entity/xml/PropertyToElementStrategyTest.java index 0d60ebd70feebe2e8e8810f296908e8b3a74100e..99cf2706937dce10b8db3a1305053356587e139a 100644 --- a/src/test/java/caosdb/server/entity/xml/PropertyToElementStrategyTest.java +++ b/src/test/java/org/caosdb/server/entity/xml/PropertyToElementStrategyTest.java @@ -20,17 +20,17 @@ * * ** end header */ -package caosdb.server.entity.xml; +package org.caosdb.server.entity.xml; import static org.junit.Assert.assertEquals; -import caosdb.server.datatype.GenericValue; -import caosdb.server.datatype.ReferenceValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.Role; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.query.Query.Selection; +import org.caosdb.server.datatype.GenericValue; +import org.caosdb.server.datatype.ReferenceValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.Role; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.query.Query.Selection; import org.jdom2.Element; import org.junit.Before; import org.junit.Test; diff --git a/src/test/java/caosdb/server/jobs/ScheduleTest.java b/src/test/java/org/caosdb/server/jobs/ScheduleTest.java similarity index 97% rename from src/test/java/caosdb/server/jobs/ScheduleTest.java rename to src/test/java/org/caosdb/server/jobs/ScheduleTest.java index 73c27d95af64b70d63ec8d1bed7fab0c0d41ffaa..7ad1d6112e8b7bd3a29042d5f6ca82709ae4100a 100644 --- a/src/test/java/caosdb/server/jobs/ScheduleTest.java +++ b/src/test/java/org/caosdb/server/jobs/ScheduleTest.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.jobs; +package org.caosdb.server.jobs; import static org.junit.Assert.fail; diff --git a/src/test/java/caosdb/server/jobs/core/TestInsertFilesInDir.java b/src/test/java/org/caosdb/server/jobs/core/TestInsertFilesInDir.java similarity index 92% rename from src/test/java/caosdb/server/jobs/core/TestInsertFilesInDir.java rename to src/test/java/org/caosdb/server/jobs/core/TestInsertFilesInDir.java index 37cad0eca28a50b006985a73edb07e45b60fdf9e..ae5df853ba5d29e681cd0fb0e5ec8eee6ec3462c 100644 --- a/src/test/java/caosdb/server/jobs/core/TestInsertFilesInDir.java +++ b/src/test/java/org/caosdb/server/jobs/core/TestInsertFilesInDir.java @@ -1,4 +1,4 @@ -package caosdb.server.jobs.core; +package org.caosdb.server.jobs.core; import static org.junit.Assert.assertTrue; diff --git a/src/test/java/caosdb/server/logging/TestLogging.java b/src/test/java/org/caosdb/server/logging/TestLogging.java similarity index 95% rename from src/test/java/caosdb/server/logging/TestLogging.java rename to src/test/java/org/caosdb/server/logging/TestLogging.java index 6e35d96585683d99c81a0fc2c669d4dc977bc09a..577222dee61759017d1a13fafd390a6e0f7850ed 100644 --- a/src/test/java/caosdb/server/logging/TestLogging.java +++ b/src/test/java/org/caosdb/server/logging/TestLogging.java @@ -1,9 +1,9 @@ -package caosdb.server.logging; +package org.caosdb.server.logging; -import caosdb.server.CaosDBServer; import java.io.File; import java.io.IOException; import org.apache.commons.io.FileUtils; +import org.caosdb.server.CaosDBServer; import org.junit.Assert; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/permissions/EntityACLTest.java b/src/test/java/org/caosdb/server/permissions/EntityACLTest.java similarity index 92% rename from src/test/java/caosdb/server/permissions/EntityACLTest.java rename to src/test/java/org/caosdb/server/permissions/EntityACLTest.java index 6aae2257e5623d072c5f60e5991a5cb0248ecf74..0e0e3ee121b09332b6cbb7d86a22458bb5fbf17f 100644 --- a/src/test/java/caosdb/server/permissions/EntityACLTest.java +++ b/src/test/java/org/caosdb/server/permissions/EntityACLTest.java @@ -20,32 +20,32 @@ * * ** end header */ -package caosdb.server.permissions; +package org.caosdb.server.permissions; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; -import caosdb.server.CaosDBServer; -import caosdb.server.accessControl.AnonymousAuthenticationToken; -import caosdb.server.accessControl.AuthenticationUtils; -import caosdb.server.accessControl.Config; -import caosdb.server.accessControl.OneTimeAuthenticationToken; -import caosdb.server.accessControl.Role; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; -import caosdb.server.database.backend.interfaces.RetrieveRoleImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.resource.AbstractCaosDBServerResource; -import caosdb.server.resource.AbstractCaosDBServerResource.XMLParser; -import caosdb.server.utils.Utils; import java.io.IOException; import java.util.BitSet; import java.util.HashSet; import java.util.LinkedList; import org.apache.shiro.SecurityUtils; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.accessControl.AnonymousAuthenticationToken; +import org.caosdb.server.accessControl.AuthenticationUtils; +import org.caosdb.server.accessControl.Config; +import org.caosdb.server.accessControl.OneTimeAuthenticationToken; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.resource.AbstractCaosDBServerResource; +import org.caosdb.server.resource.AbstractCaosDBServerResource.XMLParser; +import org.caosdb.server.utils.Utils; import org.jdom2.Element; import org.jdom2.JDOMException; import org.junit.Assert; @@ -309,14 +309,14 @@ public class EntityACLTest { public void testFactory() { final EntityACLFactory f = new EntityACLFactory(); - caosdb.server.permissions.Role role1 = caosdb.server.permissions.Role.create("role1"); + org.caosdb.server.permissions.Role role1 = org.caosdb.server.permissions.Role.create("role1"); Config config1 = new Config(); config1.setRoles(new String[] {role1.toString()}); OneTimeAuthenticationToken token1 = OneTimeAuthenticationToken.generate(config1); Subject user1 = SecurityUtils.getSecurityManager().createSubject(null); user1.login(token1); - caosdb.server.permissions.Role role2 = caosdb.server.permissions.Role.create("role2"); + org.caosdb.server.permissions.Role role2 = org.caosdb.server.permissions.Role.create("role2"); Config config2 = new Config(); config2.setRoles(new String[] {role2.toString()}); OneTimeAuthenticationToken token2 = OneTimeAuthenticationToken.generate(config2); diff --git a/src/test/java/caosdb/server/query/TestCQL.java b/src/test/java/org/caosdb/server/query/TestCQL.java similarity index 99% rename from src/test/java/caosdb/server/query/TestCQL.java rename to src/test/java/org/caosdb/server/query/TestCQL.java index 402cddd2be631291d772d494804cf21bc9dbc6b7..2264c9f02233c5462339615e142c38e2df4eb033 100644 --- a/src/test/java/caosdb/server/query/TestCQL.java +++ b/src/test/java/org/caosdb/server/query/TestCQL.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.query; +package org.caosdb.server.query; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; @@ -29,14 +29,6 @@ import static org.junit.Assert.assertNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; -import caosdb.server.CaosDBServer; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.query.CQLParser.CqContext; -import caosdb.server.query.Query.Pattern; -import caosdb.server.query.Query.QueryException; -import caosdb.server.utils.Initialization; import java.io.IOException; import java.sql.SQLException; import java.util.LinkedList; @@ -45,6 +37,14 @@ import org.antlr.v4.runtime.CharStreams; import org.antlr.v4.runtime.CommonTokenStream; import org.antlr.v4.runtime.Token; import org.antlr.v4.runtime.tree.ParseTree; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.query.CQLParser.CqContext; +import org.caosdb.server.query.Query.Pattern; +import org.caosdb.server.query.Query.QueryException; +import org.caosdb.server.utils.Initialization; import org.junit.BeforeClass; import org.junit.Test; diff --git a/src/test/java/caosdb/server/resource/FileSystemResourceTest.java b/src/test/java/org/caosdb/server/resource/FileSystemResourceTest.java similarity index 97% rename from src/test/java/caosdb/server/resource/FileSystemResourceTest.java rename to src/test/java/org/caosdb/server/resource/FileSystemResourceTest.java index 31d6c6a6c4c7caf4d388a6df1404430e93a01d0f..ed89c68ae554c0f7718ccabcb6fb2b48c0d59e61 100644 --- a/src/test/java/caosdb/server/resource/FileSystemResourceTest.java +++ b/src/test/java/org/caosdb/server/resource/FileSystemResourceTest.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; import java.io.File; import org.junit.Test; diff --git a/src/test/java/caosdb/server/resource/TestAbstractCaosDBServerResource.java b/src/test/java/org/caosdb/server/resource/TestAbstractCaosDBServerResource.java similarity index 85% rename from src/test/java/caosdb/server/resource/TestAbstractCaosDBServerResource.java rename to src/test/java/org/caosdb/server/resource/TestAbstractCaosDBServerResource.java index 59f0a1d5812b1127ea0ff4514520bc30039af5cd..a2f6646b3a450e2cf3328692cd109eaaed49f87c 100644 --- a/src/test/java/caosdb/server/resource/TestAbstractCaosDBServerResource.java +++ b/src/test/java/org/caosdb/server/resource/TestAbstractCaosDBServerResource.java @@ -1,22 +1,8 @@ -package caosdb.server.resource; +package org.caosdb.server.resource; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; -import caosdb.server.accessControl.AnonymousAuthenticationToken; -import caosdb.server.accessControl.AnonymousRealm; -import caosdb.server.accessControl.Role; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.implementation.MySQL.ConnectionException; -import caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; -import caosdb.server.database.backend.interfaces.RetrieveRoleImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.permissions.PermissionRule; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Paths; @@ -26,6 +12,20 @@ import java.util.HashSet; import org.apache.shiro.mgt.DefaultSecurityManager; import org.apache.shiro.subject.Subject; import org.apache.shiro.subject.support.DelegatingSubject; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.accessControl.AnonymousAuthenticationToken; +import org.caosdb.server.accessControl.AnonymousRealm; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.implementation.MySQL.ConnectionException; +import org.caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveRoleImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.permissions.PermissionRule; import org.jdom2.Element; import org.junit.BeforeClass; import org.junit.Rule; diff --git a/src/test/java/caosdb/server/resource/TestScriptingResource.java b/src/test/java/org/caosdb/server/resource/TestScriptingResource.java similarity index 86% rename from src/test/java/caosdb/server/resource/TestScriptingResource.java rename to src/test/java/org/caosdb/server/resource/TestScriptingResource.java index 3280ae3af5a62174006b504408d7c3bde8a2632e..845f589a9700a9d3d25eb8da2878c13ee114cd7d 100644 --- a/src/test/java/caosdb/server/resource/TestScriptingResource.java +++ b/src/test/java/org/caosdb/server/resource/TestScriptingResource.java @@ -20,29 +20,10 @@ * * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; import static org.junit.Assert.assertEquals; -import caosdb.server.CaosDBServer; -import caosdb.server.accessControl.AnonymousAuthenticationToken; -import caosdb.server.accessControl.CredentialsValidator; -import caosdb.server.accessControl.Principal; -import caosdb.server.accessControl.Role; -import caosdb.server.accessControl.UserSources; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; -import caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; -import caosdb.server.database.backend.interfaces.RetrieveRoleImpl; -import caosdb.server.database.backend.interfaces.RetrieveUserImpl; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.database.misc.TransactionBenchmark; -import caosdb.server.database.proto.ProtoUser; -import caosdb.server.entity.Message; -import caosdb.server.permissions.PermissionRule; -import caosdb.server.scripting.ScriptingPermissions; -import caosdb.server.scripting.ServerSideScriptingCaller; import java.io.IOException; import java.util.Date; import java.util.HashSet; @@ -50,6 +31,25 @@ import java.util.List; import org.apache.shiro.SecurityUtils; import org.apache.shiro.authz.permission.WildcardPermission; import org.apache.shiro.subject.Subject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.accessControl.AnonymousAuthenticationToken; +import org.caosdb.server.accessControl.CredentialsValidator; +import org.caosdb.server.accessControl.Principal; +import org.caosdb.server.accessControl.Role; +import org.caosdb.server.accessControl.UserSources; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.interfaces.RetrievePasswordValidatorImpl; +import org.caosdb.server.database.backend.interfaces.RetrievePermissionRulesImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveRoleImpl; +import org.caosdb.server.database.backend.interfaces.RetrieveUserImpl; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.database.misc.TransactionBenchmark; +import org.caosdb.server.database.proto.ProtoUser; +import org.caosdb.server.entity.Message; +import org.caosdb.server.permissions.PermissionRule; +import org.caosdb.server.scripting.ScriptingPermissions; +import org.caosdb.server.scripting.ServerSideScriptingCaller; import org.jdom2.Element; import org.junit.BeforeClass; import org.junit.Test; @@ -172,7 +172,7 @@ public class TestScriptingResource { public int callScript( java.util.List<String> invokation, Integer timeout_ms, - java.util.List<caosdb.server.entity.FileProperties> files, + java.util.List<org.caosdb.server.entity.FileProperties> files, Object authToken) throws Message { if (invokation.get(0).equals("anonymous_ok")) { diff --git a/src/test/java/caosdb/server/resource/TestSharedFileResource.java b/src/test/java/org/caosdb/server/resource/TestSharedFileResource.java similarity index 96% rename from src/test/java/caosdb/server/resource/TestSharedFileResource.java rename to src/test/java/org/caosdb/server/resource/TestSharedFileResource.java index 41e134d28aed98c0fb01bee256bce513bb43f13e..f016f59191f6d9449cc4a4dc9ef3e84075205a0a 100644 --- a/src/test/java/caosdb/server/resource/TestSharedFileResource.java +++ b/src/test/java/org/caosdb/server/resource/TestSharedFileResource.java @@ -20,7 +20,7 @@ * ** end header */ -package caosdb.server.resource; +package org.caosdb.server.resource; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; @@ -28,11 +28,6 @@ import static org.junit.Assert.assertNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; -import caosdb.server.CaosDBServer; -import caosdb.server.FileSystem; -import caosdb.server.ServerProperties; -import caosdb.server.accessControl.AnonymousAuthenticationToken; -import caosdb.server.accessControl.AnonymousRealm; import java.io.File; import java.io.IOException; import java.nio.file.Files; @@ -42,6 +37,11 @@ import net.jcip.annotations.NotThreadSafe; import org.apache.shiro.mgt.DefaultSecurityManager; import org.apache.shiro.subject.Subject; import org.apache.shiro.subject.support.DelegatingSubject; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.FileSystem; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.accessControl.AnonymousAuthenticationToken; +import org.caosdb.server.accessControl.AnonymousRealm; import org.junit.AfterClass; import org.junit.BeforeClass; import org.junit.Rule; diff --git a/src/test/java/caosdb/server/scripting/TestServerSideScriptingCaller.java b/src/test/java/org/caosdb/server/scripting/TestServerSideScriptingCaller.java similarity index 98% rename from src/test/java/caosdb/server/scripting/TestServerSideScriptingCaller.java rename to src/test/java/org/caosdb/server/scripting/TestServerSideScriptingCaller.java index f752c29c2f99b33d30a75ff3e09c7043c92fc464..28fdd55e78db1a2142b5eac86327617b8f371089 100644 --- a/src/test/java/caosdb/server/scripting/TestServerSideScriptingCaller.java +++ b/src/test/java/org/caosdb/server/scripting/TestServerSideScriptingCaller.java @@ -20,19 +20,12 @@ * * ** end header */ -package caosdb.server.scripting; +package org.caosdb.server.scripting; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; -import caosdb.CaosDBTestClass; -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.FileProperties; -import caosdb.server.entity.Message; -import caosdb.server.utils.ServerMessages; import java.io.File; import java.io.FileNotFoundException; import java.io.IOException; @@ -43,6 +36,13 @@ import java.util.Collection; import java.util.HashMap; import java.util.Map; import org.apache.commons.io.FileUtils; +import org.caosdb.CaosDBTestClass; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.FileProperties; +import org.caosdb.server.entity.Message; +import org.caosdb.server.utils.ServerMessages; import org.hamcrest.BaseMatcher; import org.hamcrest.Description; import org.junit.After; diff --git a/src/test/java/caosdb/server/transaction/UpdateTest.java b/src/test/java/org/caosdb/server/transaction/UpdateTest.java similarity index 92% rename from src/test/java/caosdb/server/transaction/UpdateTest.java rename to src/test/java/org/caosdb/server/transaction/UpdateTest.java index d90724744164b23ecdd7a27b90cddac1e048f86f..6b0e7b3f988f18142c6ebdb535212cd7454233f0 100644 --- a/src/test/java/caosdb/server/transaction/UpdateTest.java +++ b/src/test/java/org/caosdb/server/transaction/UpdateTest.java @@ -20,21 +20,21 @@ * * ** end header */ -package caosdb.server.transaction; +package org.caosdb.server.transaction; -import static caosdb.server.utils.EntityStatus.QUALIFIED; -import static caosdb.server.utils.EntityStatus.VALID; +import static org.caosdb.server.utils.EntityStatus.QUALIFIED; +import static org.caosdb.server.utils.EntityStatus.VALID; import static org.junit.Assert.assertEquals; -import caosdb.server.CaosDBException; -import caosdb.server.datatype.GenericValue; -import caosdb.server.entity.Entity; -import caosdb.server.entity.EntityInterface; -import caosdb.server.entity.StatementStatus; -import caosdb.server.entity.wrapper.Property; -import caosdb.server.utils.EntityStatus; import java.io.IOException; import java.security.NoSuchAlgorithmException; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.datatype.GenericValue; +import org.caosdb.server.entity.Entity; +import org.caosdb.server.entity.EntityInterface; +import org.caosdb.server.entity.StatementStatus; +import org.caosdb.server.entity.wrapper.Property; +import org.caosdb.server.utils.EntityStatus; import org.junit.Test; public class UpdateTest { diff --git a/src/test/java/caosdb/server/utils/FileUtilsTest.java b/src/test/java/org/caosdb/server/utils/FileUtilsTest.java similarity index 96% rename from src/test/java/caosdb/server/utils/FileUtilsTest.java rename to src/test/java/org/caosdb/server/utils/FileUtilsTest.java index e4b2411dc0e77ce0225c0637422c84bbab2cc4aa..7e0664f3df401f916ed48c6830271334083a5ac4 100644 --- a/src/test/java/caosdb/server/utils/FileUtilsTest.java +++ b/src/test/java/org/caosdb/server/utils/FileUtilsTest.java @@ -20,25 +20,13 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; -import caosdb.server.CaosDBException; -import caosdb.server.CaosDBServer; -import caosdb.server.FileSystem; -import caosdb.server.ServerProperties; -import caosdb.server.database.BackendTransaction; -import caosdb.server.database.access.Access; -import caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemGetFileIterator.FileNameIterator; -import caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemHelper; -import caosdb.server.database.backend.transaction.FileConsistencyCheck; -import caosdb.server.database.backend.transaction.GetFileIterator; -import caosdb.server.database.exceptions.TransactionException; -import caosdb.server.entity.Message; import java.io.File; import java.io.IOException; import java.io.PrintStream; @@ -47,6 +35,18 @@ import java.security.NoSuchAlgorithmException; import java.util.Iterator; import java.util.regex.Pattern; import net.jcip.annotations.NotThreadSafe; +import org.caosdb.server.CaosDBException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.FileSystem; +import org.caosdb.server.ServerProperties; +import org.caosdb.server.database.BackendTransaction; +import org.caosdb.server.database.access.Access; +import org.caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemGetFileIterator.FileNameIterator; +import org.caosdb.server.database.backend.implementation.UnixFileSystem.UnixFileSystemHelper; +import org.caosdb.server.database.backend.transaction.FileConsistencyCheck; +import org.caosdb.server.database.backend.transaction.GetFileIterator; +import org.caosdb.server.database.exceptions.TransactionException; +import org.caosdb.server.entity.Message; import org.eclipse.jetty.io.RuntimeIOException; import org.junit.After; import org.junit.AfterClass; diff --git a/src/test/java/caosdb/server/utils/UtilsTest.java b/src/test/java/org/caosdb/server/utils/UtilsTest.java similarity index 98% rename from src/test/java/caosdb/server/utils/UtilsTest.java rename to src/test/java/org/caosdb/server/utils/UtilsTest.java index c75d5a3ad861ac5b4c5ff9dfc905767479fb1a4f..3b92a11d69b465c33ddc9629d89c6d91e6f456e0 100644 --- a/src/test/java/caosdb/server/utils/UtilsTest.java +++ b/src/test/java/org/caosdb/server/utils/UtilsTest.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils; +package org.caosdb.server.utils; import static org.junit.Assert.assertEquals; diff --git a/src/test/java/caosdb/server/utils/WebinterfaceUtilsTest.java b/src/test/java/org/caosdb/server/utils/WebinterfaceUtilsTest.java similarity index 93% rename from src/test/java/caosdb/server/utils/WebinterfaceUtilsTest.java rename to src/test/java/org/caosdb/server/utils/WebinterfaceUtilsTest.java index 075c8d998acdfc7f897f9429de468034a4dc022e..9231dd77a6724b5a8c5f7f4f244bd92c6f4a5e91 100644 --- a/src/test/java/caosdb/server/utils/WebinterfaceUtilsTest.java +++ b/src/test/java/org/caosdb/server/utils/WebinterfaceUtilsTest.java @@ -1,12 +1,12 @@ -package caosdb.server.utils; +package org.caosdb.server.utils; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertNull; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import java.io.IOException; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; import org.junit.BeforeClass; import org.junit.Rule; import org.junit.Test; diff --git a/src/test/java/caosdb/server/utils/fsm/TestFiniteStateMachine.java b/src/test/java/org/caosdb/server/utils/fsm/TestFiniteStateMachine.java similarity index 98% rename from src/test/java/caosdb/server/utils/fsm/TestFiniteStateMachine.java rename to src/test/java/org/caosdb/server/utils/fsm/TestFiniteStateMachine.java index 3849df7dc66f8f812c36b0a4b49dcb2774d034b3..2a7b726b84464f3a7d287434b2767a34baaf4b50 100644 --- a/src/test/java/caosdb/server/utils/fsm/TestFiniteStateMachine.java +++ b/src/test/java/org/caosdb/server/utils/fsm/TestFiniteStateMachine.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; import static org.junit.Assert.assertEquals; diff --git a/src/test/java/caosdb/server/utils/fsm/TestStrategyFiniteStateMachine.java b/src/test/java/org/caosdb/server/utils/fsm/TestStrategyFiniteStateMachine.java similarity index 97% rename from src/test/java/caosdb/server/utils/fsm/TestStrategyFiniteStateMachine.java rename to src/test/java/org/caosdb/server/utils/fsm/TestStrategyFiniteStateMachine.java index 8d383383dd4a896f0befa1b3c2b1854129377353..ebf719b1eaa4b56f3b64bdd9371f121231b4ed68 100644 --- a/src/test/java/caosdb/server/utils/fsm/TestStrategyFiniteStateMachine.java +++ b/src/test/java/org/caosdb/server/utils/fsm/TestStrategyFiniteStateMachine.java @@ -20,7 +20,7 @@ * * ** end header */ -package caosdb.server.utils.fsm; +package org.caosdb.server.utils.fsm; import java.util.HashMap; import java.util.Map; diff --git a/src/test/java/caosdb/server/utils/mail/TestMail.java b/src/test/java/org/caosdb/server/utils/mail/TestMail.java similarity index 90% rename from src/test/java/caosdb/server/utils/mail/TestMail.java rename to src/test/java/org/caosdb/server/utils/mail/TestMail.java index 2bdc90de64e58a81bafbbd7c484677b5bf54eb7a..5d7ba41089ee71d6ca4eff529bf6ce1ca0828b92 100644 --- a/src/test/java/caosdb/server/utils/mail/TestMail.java +++ b/src/test/java/org/caosdb/server/utils/mail/TestMail.java @@ -20,12 +20,12 @@ * * ** end header */ -package caosdb.server.utils.mail; +package org.caosdb.server.utils.mail; -import caosdb.CaosDBTestClass; -import caosdb.server.CaosDBServer; -import caosdb.server.ServerProperties; import java.io.IOException; +import org.caosdb.CaosDBTestClass; +import org.caosdb.server.CaosDBServer; +import org.caosdb.server.ServerProperties; import org.junit.BeforeClass; import org.junit.Test;