diff --git a/CHANGELOG.md b/CHANGELOG.md
index e1fd615a09ae8023f21bebe404a99c70951bb5c3..90fd8f1105b14ae838a69b19cb400c50b608aaa5 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -12,6 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
* New setup extra `test` which installs the dependencies for testing.
### Changed ###
+* Renamed the `filter` function of Container, ParentList and PropertyList to `filter_by_identity`.
### Deprecated ###
diff --git a/src/doc/tutorials/complex_data_models.rst b/src/doc/tutorials/complex_data_models.rst
index 168cf3b9f0d6839ed8f78beb01ae24fb9d489e88..873c8bd5af542bb73a6f19fb25fa238fbee500a3 100644
--- a/src/doc/tutorials/complex_data_models.rst
+++ b/src/doc/tutorials/complex_data_models.rst
@@ -100,29 +100,29 @@ entities. A short example:
properties = r.properties
# As r only has one property with id 101, this returns a list containing only p1_1
- properties.filter(pid=101)
+ properties.filter_by_identity(pid=101)
# Result: [p1_1]
# Filtering with name="Property 1" returns both p1_1 and p1_2, as they share their name
- properties.filter(name="Property 1")
+ properties.filter_by_identity(name="Property 1")
# Result: [p1_1, p1_2]
# If both name and pid are given, matching is based only on pid for all entities that have an id
- properties.filter(pid="102", name="Other Property")
+ properties.filter_by_identity(pid="102", name="Other Property")
# Result: [p2_1, p2_2, p2_3]
- # However, filtering with name="Property 1" and id=101 returns both p1_1 and p1_2, because
+ # However, filter_by_identity with name="Property 1" and id=101 returns both p1_1 and p1_2, because
# p1_2 does not have an id and matches the name
- properties.filter(pid="101", name="Property 1")
+ properties.filter_by_identity(pid="101", name="Property 1")
# Result: [p1_1, p1_2]
# We can also filter using an entity, in which case the name and id of the entity are used:
- properties.filter(pid="102", name="Property 2") == properties.filter(p2_1)
+ properties.filter_by_identity(pid="102", name="Property 2") == properties.filter_by_identity(p2_1)
# Result: True
# If we only need properties that match both id and name, we can set the parameter
# conjunction to True:
- properties.filter(pid="102", name="Property 2", conjunction=True)
+ properties.filter_by_identity(pid="102", name="Property 2", conjunction=True)
# Result: [p2_1]
The filter function of ParentList works analogously.
diff --git a/src/linkahead/apiutils.py b/src/linkahead/apiutils.py
index 1aa127d31d6456076ffdd6dc5b591c3bb2f7b0b7..b2a612faea1616c64b7e78575156abccfdb29e61 100644
--- a/src/linkahead/apiutils.py
+++ b/src/linkahead/apiutils.py
@@ -386,7 +386,7 @@ def compare_entities(entity0: Optional[Entity] = None,
for prop in entity0.properties:
# ToDo: Would making id default break anything?
key = prop.name if prop.name is not None else prop.id
- matching = entity1.properties.filter(prop)
+ matching = entity1.properties.filter_by_identity(prop)
if len(matching) == 0:
# entity1 has prop, entity0 does not
diff[0]["properties"][key] = {}
@@ -440,7 +440,7 @@ def compare_entities(entity0: Optional[Entity] = None,
for prop in entity1.properties:
key = prop.name if prop.name is not None else prop.id
# check how often the property appears in entity0
- num_prop_in_ent0 = len(entity0.properties.filter(prop))
+ num_prop_in_ent0 = len(entity0.properties.filter_by_identity(prop))
if num_prop_in_ent0 == 0:
# property is only present in entity0 - add to diff
diff[1]["properties"][key] = {}
@@ -455,7 +455,7 @@ def compare_entities(entity0: Optional[Entity] = None,
(1, entity1.parents, entity0)]:
for parent in parents:
key = parent.name if parent.name is not None else parent.id
- matching = other_entity.parents.filter(parent)
+ matching = other_entity.parents.filter_by_identity(parent)
if len(matching) == 0:
diff[index]["parents"].append(key)
continue
diff --git a/src/linkahead/common/models.py b/src/linkahead/common/models.py
index 1caa6a4de14fc6551aa7cfe940c2074be80a1281..526a6f43d5658458053bfda5b0a831410196587f 100644
--- a/src/linkahead/common/models.py
+++ b/src/linkahead/common/models.py
@@ -2562,7 +2562,11 @@ class PropertyList(list):
return xml2str(xml)
- def filter(self, prop: Optional[Property] = None,
+ def filter(self, *args, **kwargs):
+ warnings.warn(DeprecationWarning("This function was renamed to filter_by_identity."))
+ return self.filter(*args, **kwargs)
+
+ def filter_by_identity(self, prop: Optional[Property] = None,
pid: Union[None, str, int] = None,
name: Optional[str] = None,
conjunction: bool = False) -> list:
@@ -2570,7 +2574,7 @@ class PropertyList(list):
Return all Properties from the given PropertyList that match the
selection criteria.
- Please refer to the documentation of _filter_entity_list for a detailed
+ Please refer to the documentation of _filter_entity_list_by_identity for a detailed
description of behaviour.
Params
@@ -2593,7 +2597,7 @@ class PropertyList(list):
matches : list
List containing all matching Properties
"""
- return _filter_entity_list(self, pid=pid, name=name, entity=prop,
+ return _filter_entity_list_by_identity(self, pid=pid, name=name, entity=prop,
conjunction=conjunction)
def _get_entity_by_cuid(self, cuid: str):
@@ -2731,7 +2735,11 @@ class ParentList(list):
return xml2str(xml)
- def filter(self, parent: Optional[Parent] = None,
+ def filter(self, *args, **kwargs):
+ warnings.warn(DeprecationWarning("This function was renamed to filter_by_identity."))
+ return self.filter(*args, **kwargs)
+
+ def filter_by_identity(self, parent: Optional[Parent] = None,
pid: Union[None, str, int] = None,
name: Optional[str] = None,
conjunction: bool = False) -> list:
@@ -2739,7 +2747,7 @@ class ParentList(list):
Return all Parents from the given ParentList that match the selection
criteria.
- Please refer to the documentation of _filter_entity_list for a detailed
+ Please refer to the documentation of _filter_entity_list_by_identity for a detailed
description of behaviour.
Params
@@ -2762,7 +2770,7 @@ class ParentList(list):
matches : list
List containing all matching Parents
"""
- return _filter_entity_list(self, pid=pid, name=name, entity=parent,
+ return _filter_entity_list_by_identity(self, pid=pid, name=name, entity=parent,
conjunction=conjunction)
def remove(self, parent: Union[Entity, int, str]):
@@ -5537,7 +5545,7 @@ def delete(ids: Union[list[int], range], raise_exception_on_error: bool = True):
return c.delete(raise_exception_on_error=raise_exception_on_error)
-def _filter_entity_list(listobject: list[Entity],
+def _filter_entity_list_by_identity(listobject: list[Entity],
entity: Optional[Entity] = None,
pid: Union[None, str, int] = None,
name: Optional[str] = None,
diff --git a/unittests/test_entity.py b/unittests/test_entity.py
index 2127ce028f4de55b8ef0ca704c1e69959c24ba82..e946fd40b8ea95c9f493b5e8f1e12457b2739a72 100644
--- a/unittests/test_entity.py
+++ b/unittests/test_entity.py
@@ -161,7 +161,7 @@ def test_property_list():
pl.append(p3)
-def test_filter():
+def test_filter_by_identity():
rt1 = RecordType(id=100)
rt2 = RecordType(id=101, name="RT")
rt3 = RecordType(name="")
@@ -184,7 +184,7 @@ def test_filter():
for coll in [entity.properties, entity.parents]:
for ent in test_ents:
assert ent not in coll
- assert ent not in coll.filter(ent)
+ assert ent not in coll.filter_by_identity(ent)
# Checks with each type
t, t_props, t_pars = entity, entity.properties, entity.parents
@@ -194,23 +194,23 @@ def test_filter():
tp1 = t.properties[-1]
t.add_property(p3)
tp3 = t.properties[-1]
- assert len(t_props.filter(pid=100)) == 1
- assert tp1 in t_props.filter(pid=100)
- assert len(t_props.filter(pid="100")) == 1
- assert tp1 in t_props.filter(pid="100")
- assert len(t_props.filter(pid=101, name="RT")) == 1
- assert tp3 in t_props.filter(pid=101, name="RT")
+ assert len(t_props.filter_by_identity(pid=100)) == 1
+ assert tp1 in t_props.filter_by_identity(pid=100)
+ assert len(t_props.filter_by_identity(pid="100")) == 1
+ assert tp1 in t_props.filter_by_identity(pid="100")
+ assert len(t_props.filter_by_identity(pid=101, name="RT")) == 1
+ assert tp3 in t_props.filter_by_identity(pid=101, name="RT")
for entity in [rt1, p2, r1, r2]:
- assert entity not in t_props.filter(pid=100)
- assert tp1 in t_props.filter(entity)
+ assert entity not in t_props.filter_by_identity(pid=100)
+ assert tp1 in t_props.filter_by_identity(entity)
# Check that direct addition (not wrapped) works
t_props.append(p2)
tp2 = t_props[-1]
- assert tp2 in t_props.filter(pid=100)
- assert tp2 not in t_props.filter(pid=101, name="RT")
+ assert tp2 in t_props.filter_by_identity(pid=100)
+ assert tp2 not in t_props.filter_by_identity(pid=101, name="RT")
for entity in [rt1, r1, r2]:
- assert entity not in t_props.filter(pid=100)
- assert tp2 in t_props.filter(entity)
+ assert entity not in t_props.filter_by_identity(pid=100)
+ assert tp2 in t_props.filter_by_identity(entity)
# Parents
# Filtering with both name and id
@@ -218,67 +218,67 @@ def test_filter():
tr3 = t.parents[-1]
t.add_parent(r5)
tr5 = t.parents[-1]
- assert tr3 in t_pars.filter(pid=101)
- assert tr5 not in t_pars.filter(pid=101)
- assert tr3 not in t_pars.filter(name="R")
- assert tr5 in t_pars.filter(name="R")
- assert tr3 in t_pars.filter(pid=101, name="R")
- assert tr5 not in t_pars.filter(pid=101, name="R")
- assert tr3 not in t_pars.filter(pid=104, name="RT")
- assert tr5 in t_pars.filter(pid=104, name="RT")
- assert tr3 not in t_pars.filter(pid=105, name="T")
- assert tr5 not in t_pars.filter(pid=105, name="T")
+ assert tr3 in t_pars.filter_by_identity(pid=101)
+ assert tr5 not in t_pars.filter_by_identity(pid=101)
+ assert tr3 not in t_pars.filter_by_identity(name="R")
+ assert tr5 in t_pars.filter_by_identity(name="R")
+ assert tr3 in t_pars.filter_by_identity(pid=101, name="R")
+ assert tr5 not in t_pars.filter_by_identity(pid=101, name="R")
+ assert tr3 not in t_pars.filter_by_identity(pid=104, name="RT")
+ assert tr5 in t_pars.filter_by_identity(pid=104, name="RT")
+ assert tr3 not in t_pars.filter_by_identity(pid=105, name="T")
+ assert tr5 not in t_pars.filter_by_identity(pid=105, name="T")
# Works also without id / name and with duplicate parents
for ent in test_ents:
t.add_parent(ent)
for ent in t_pars:
- assert ent in t_pars.filter(ent)
+ assert ent in t_pars.filter_by_identity(ent)
# Grid-Based
r7 = Record()
r7.add_property(Property()).add_property(name="A").add_property(name="B")
r7.add_property(id=27).add_property(id=27, name="A").add_property(id=27, name="B")
r7.add_property(id=43).add_property(id=43, name="A").add_property(id=43, name="B")
- assert len(r7.properties.filter(pid=27)) == 3
- assert len(r7.properties.filter(pid=43)) == 3
- assert len(r7.properties.filter(pid=43, conjunction=True)) == 3
- assert len(r7.properties.filter(name="A")) == 3
- assert len(r7.properties.filter(name="B")) == 3
- assert len(r7.properties.filter(name="B", conjunction=True)) == 3
- assert len(r7.properties.filter(pid=1, name="A")) == 1
- assert len(r7.properties.filter(pid=1, name="A", conjunction=True)) == 0
- assert len(r7.properties.filter(pid=27, name="B")) == 4
- assert len(r7.properties.filter(pid=27, name="B", conjunction=True)) == 1
- assert len(r7.properties.filter(pid=27, name="C")) == 3
- assert len(r7.properties.filter(pid=27, name="C", conjunction=True)) == 0
+ assert len(r7.properties.filter_by_identity(pid=27)) == 3
+ assert len(r7.properties.filter_by_identity(pid=43)) == 3
+ assert len(r7.properties.filter_by_identity(pid=43, conjunction=True)) == 3
+ assert len(r7.properties.filter_by_identity(name="A")) == 3
+ assert len(r7.properties.filter_by_identity(name="B")) == 3
+ assert len(r7.properties.filter_by_identity(name="B", conjunction=True)) == 3
+ assert len(r7.properties.filter_by_identity(pid=1, name="A")) == 1
+ assert len(r7.properties.filter_by_identity(pid=1, name="A", conjunction=True)) == 0
+ assert len(r7.properties.filter_by_identity(pid=27, name="B")) == 4
+ assert len(r7.properties.filter_by_identity(pid=27, name="B", conjunction=True)) == 1
+ assert len(r7.properties.filter_by_identity(pid=27, name="C")) == 3
+ assert len(r7.properties.filter_by_identity(pid=27, name="C", conjunction=True)) == 0
# Entity based filtering behaves the same
- assert (r7.properties.filter(pid=27) ==
- r7.properties.filter(Property(id=27)))
- assert (r7.properties.filter(pid=43, conjunction=True) ==
- r7.properties.filter(Property(id=43), conjunction=True))
- assert (r7.properties.filter(name="A") ==
- r7.properties.filter(Property(name="A")))
- assert (r7.properties.filter(name="B") ==
- r7.properties.filter(Property(name="B")))
- assert (r7.properties.filter(name="B", conjunction=True) ==
- r7.properties.filter(Property(name="B"), conjunction=True))
- assert (r7.properties.filter(pid=1, name="A") ==
- r7.properties.filter(Property(id=1, name="A")))
- assert (r7.properties.filter(pid=1, name="A", conjunction=True) ==
- r7.properties.filter(Property(id=1, name="A"), conjunction=True))
- assert (r7.properties.filter(pid=27, name="B") ==
- r7.properties.filter(Property(id=27, name="B")))
- assert (r7.properties.filter(pid=27, name="B", conjunction=True) ==
- r7.properties.filter(Property(id=27, name="B"), conjunction=True))
- assert (r7.properties.filter(pid=27, name="C") ==
- r7.properties.filter(Property(id=27, name="C")))
- assert (r7.properties.filter(pid=27, name="C", conjunction=True) ==
- r7.properties.filter(Property(id=27, name="C"), conjunction=True))
+ assert (r7.properties.filter_by_identity(pid=27) ==
+ r7.properties.filter_by_identity(Property(id=27)))
+ assert (r7.properties.filter_by_identity(pid=43, conjunction=True) ==
+ r7.properties.filter_by_identity(Property(id=43), conjunction=True))
+ assert (r7.properties.filter_by_identity(name="A") ==
+ r7.properties.filter_by_identity(Property(name="A")))
+ assert (r7.properties.filter_by_identity(name="B") ==
+ r7.properties.filter_by_identity(Property(name="B")))
+ assert (r7.properties.filter_by_identity(name="B", conjunction=True) ==
+ r7.properties.filter_by_identity(Property(name="B"), conjunction=True))
+ assert (r7.properties.filter_by_identity(pid=1, name="A") ==
+ r7.properties.filter_by_identity(Property(id=1, name="A")))
+ assert (r7.properties.filter_by_identity(pid=1, name="A", conjunction=True) ==
+ r7.properties.filter_by_identity(Property(id=1, name="A"), conjunction=True))
+ assert (r7.properties.filter_by_identity(pid=27, name="B") ==
+ r7.properties.filter_by_identity(Property(id=27, name="B")))
+ assert (r7.properties.filter_by_identity(pid=27, name="B", conjunction=True) ==
+ r7.properties.filter_by_identity(Property(id=27, name="B"), conjunction=True))
+ assert (r7.properties.filter_by_identity(pid=27, name="C") ==
+ r7.properties.filter_by_identity(Property(id=27, name="C")))
+ assert (r7.properties.filter_by_identity(pid=27, name="C", conjunction=True) ==
+ r7.properties.filter_by_identity(Property(id=27, name="C"), conjunction=True))
# Name only matching and name overwrite
r8 = Record().add_property(name="A").add_property(name="B").add_property(name="B")
r8.add_property(Property(name="A"), name="B")
r8.add_property(Property(name="A", id=12), name="C")
- assert len(r8.properties.filter(name="A")) == 1
- assert len(r8.properties.filter(name="B")) == 3
- assert len(r8.properties.filter(name="C")) == 1
- assert len(r8.properties.filter(pid=12)) == 1
+ assert len(r8.properties.filter_by_identity(name="A")) == 1
+ assert len(r8.properties.filter_by_identity(name="B")) == 3
+ assert len(r8.properties.filter_by_identity(name="C")) == 1
+ assert len(r8.properties.filter_by_identity(pid=12)) == 1