diff --git a/CHANGELOG.md b/CHANGELOG.md
index a60110a61278de6979d25c17937617ae79a0cf7e..f72543af12f379b5fd6872cf2a109b57a88e14ae 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Added ###
+* Empty string support (See caosdb-server#33)
+
### Changed ###
### Deprecated ###
diff --git a/src/caosdb/common/models.py b/src/caosdb/common/models.py
index 364ff99270294a6be714ddf1db759ac63746daaa..77638589d3ed4cd9dcb63c1935bcf1c2a34283ce 100644
--- a/src/caosdb/common/models.py
+++ b/src/caosdb/common/models.py
@@ -654,7 +654,7 @@ class Entity(object):
if self.description is not None:
xml.set("description", str(self.description))
- if self.value is not None and self.value != "":
+ if self.value is not None:
if isinstance(self.value, Entity):
if self.value.id is not None:
xml.text = str(self.value.id)
@@ -673,11 +673,15 @@ class Entity(object):
v_elem.text = str(v.name)
else:
v_elem.text = str(v)
+ elif v == "":
+ v_elem.append(etree.Element("EmptyString"))
elif v is None:
pass
else:
v_elem.text = str(v)
xml.append(v_elem)
+ elif self.value == "":
+ xml.append(etree.Element("EmptyString"))
else:
xml.text = str(self.value)
@@ -945,33 +949,31 @@ class Entity(object):
def _parse_col_values(cdt, vals):
matcher = re.compile(r"^(?P<col>[^<]+)<(?P<dt>[^>]+)>$")
m = matcher.match(cdt)
- try:
- if m:
- col = m.group("col")
- dt = m.group("dt")
+ if m:
+ col = m.group("col")
+ dt = m.group("dt")
- if col == "LIST":
- ret = list()
- add = ret.append
- else:
- return vals
+ if col == "LIST":
+ ret = list()
+ add = ret.append
+ else:
+ return vals
- for v in vals:
- if dt == DOUBLE:
- add(float(v))
- elif dt == TEXT or dt == DATETIME:
+ for v in vals:
+ if dt == DOUBLE:
+ add(float(v))
+ elif dt == TEXT or dt == DATETIME:
+ add(v)
+ else:
+ try:
+ add(int(v))
+ except (ValueError, TypeError):
add(v)
- else:
- try:
- add(int(v))
- except BaseException:
- add(v)
-
- return ret
- except BaseException:
- traceback.print_exc(file=sys.stderr)
+ return ret
+ if len(vals) == 1:
+ return vals[0]
return vals
@@ -3567,10 +3569,13 @@ def _parse_single_xml_element(elem):
Entity._from_xml(entity, elem)
return entity
+ elif elem.tag.lower() == "emptystring":
+ return ""
elif elem.tag.lower() == "value":
- if elem.text is None:
+ if len(elem) == 1 and elem[0].tag.lower() == "emptystring":
+ return ""
+ elif elem.text is None or elem.text.strip() == "":
return None
-
return str(elem.text.strip())
elif elem.tag.lower() == "querytemplate":
return QueryTemplate._from_xml(elem)
diff --git a/unittests/record.py b/unittests/record.py
deleted file mode 100644
index ac20f1ce08b249035c1ebd0f64d41bdb8f7ac346..0000000000000000000000000000000000000000
--- a/unittests/record.py
+++ /dev/null
@@ -1,34 +0,0 @@
-# -*- encoding: utf-8 -*-
-#
-# ** header v3.0
-# This file is a part of the CaosDB Project.
-#
-# Copyright (C) 2018 Research Group Biomedical Physics,
-# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU Affero General Public License as
-# published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU Affero General Public License for more details.
-#
-# You should have received a copy of the GNU Affero General Public License
-# along with this program. If not, see <https://www.gnu.org/licenses/>.
-#
-# ** end header
-#
-# Test record for test_apiutils
-# A. Schlemmer, 02/2018
-
-import caosdb as db
-from lxml import etree
-
-
-# This is Record ID 171179 from the current CaosDB
-testrecord = db.Record._from_xml(db.Record(), etree.fromstring("""
-<Record id="171179"><TransactionBenchmark>\n </TransactionBenchmark><Parent id="163454" name="LeapExperiment" description="Experiment for the LEAP project."/><Property id="163414" name="experimentId" description="A unique identifier for experiments" datatype="TEXT" importance="FIX" flag="inheritance:FIX">KCdSYWJiaXQnLCAnZXhfdml2bycsICdzeW5jaHJvbml6YXRpb25fbWFwJywgTm9uZSwgJzIwMTctMDgtMTEnLCBOb25lLCBOb25lKQ==</Property><Property id="163442" name="date" description="A calendar date. When something took place." datatype="DATETIME" importance="FIX" flag="inheritance:FIX">2017-08-11</Property><Property id="163399" name="vivoness" description="How the experiment was done: IN_VIVO or EX_VIVO." datatype="TEXT" importance="FIX" flag="inheritance:FIX">ex_vivo</Property><Property id="163418" name="species" description="The species of the experimental animal." datatype="TEXT" importance="FIX" flag="inheritance:FIX">Rabbit</Property><Property id="163449" name="ExperimentSeries" description="A collection of [Experiment] records which have the same [aim]." datatype="ExperimentSeries" importance="FIX" flag="inheritance:FIX">163386</Property><Property id="163397" name="MultiRecRecording" datatype="LIST<MultiRecRecording>" importance="FIX" flag="inheritance:FIX"><Value>171242</Value><Value>170651</Value><Value>171701</Value><Value>172074</Value><Value>171408</Value><Value>171687</Value><Value>170791</Value><Value>171115</Value><Value>171893</Value><Value>171237</Value><Value>171309</Value><Value>170899</Value><Value>171048</Value><Value>171077</Value><Value>171723</Value><Value>171085</Value><Value>171812</Value><Value>171829</Value><Value>171669</Value><Value>170695</Value><Value>170875</Value><Value>171751</Value><Value>171412</Value><Value>172204</Value><Value>170997</Value><Value>171490</Value><Value>171504</Value><Value>170977</Value><Value>171895</Value><Value>172233</Value><Value>171261</Value><Value>171318</Value><Value>171014</Value><Value>171132</Value><Value>171575</Value><Value>172217</Value><Value>171638</Value><Value>170656</Value><Value>171927</Value><Value>172232</Value><Value>171864</Value><Value>171564</Value><Value>171090</Value><Value>171633</Value><Value>171456</Value><Value>171755</Value><Value>170641</Value><Value>172144</Value><Value>171872</Value><Value>171619</Value><Value>171180</Value><Value>172019</Value><Value>171193</Value><Value>171069</Value><Value>171643</Value><Value>171789</Value><Value>170785</Value><Value>170904</Value><Value>171130</Value><Value>171098</Value><Value>171241</Value><Value>171796</Value><Value>171776</Value><Value>171175</Value><Value>171112</Value><Value>171514</Value><Value>171854</Value><Value>170962</Value><Value>171818</Value><Value>170745</Value><Value>171149</Value><Value>170639</Value><Value>171508</Value><Value>170800</Value><Value>171141</Value><Value>171414</Value><Value>171325</Value><Value>172168</Value><Value>171184</Value><Value>172083</Value><Value>172029</Value><Value>171556</Value><Value>172195</Value><Value>170789</Value><Value>171300</Value><Value>172230</Value><Value>171720</Value><Value>171341</Value><Value>171937</Value><Value>171673</Value><Value>172106</Value><Value>171281</Value><Value>171897</Value><Value>171108</Value><Value>172014</Value><Value>170867</Value><Value>171531</Value><Value>171674</Value><Value>172077</Value><Value>170944</Value><Value>171228</Value><Value>172207</Value><Value>171039</Value><Value>171778</Value><Value>170794</Value><Value>171646</Value><Value>172027</Value><Value>171279</Value><Value>171618</Value><Value>171233</Value><Value>170811</Value><Value>171357</Value><Value>172180</Value><Value>171585</Value><Value>170774</Value><Value>171625</Value><Value>171310</Value><Value>171855</Value><Value>172084</Value><Value>171395</Value><Value>171955</Value><Value>172216</Value><Value>171705</Value><Value>171312</Value><Value>171659</Value><Value>172192</Value><Value>171157</Value><Value>171978</Value><Value>170707</Value><Value>171250</Value><Value>171929</Value><Value>171709</Value><Value>170898</Value><Value>170723</Value><Value>172060</Value><Value>171693</Value><Value>172036</Value><Value>172162</Value><Value>171460</Value><Value>172065</Value><Value>171174</Value><Value>171461</Value><Value>172093</Value><Value>171200</Value><Value>172007</Value><Value>172102</Value><Value>171368</Value><Value>171761</Value><Value>172157</Value><Value>171354</Value><Value>170698</Value><Value>171254</Value><Value>171740</Value><Value>171303</Value><Value>170874</Value><Value>171248</Value><Value>171698</Value><Value>171191</Value><Value>171948</Value><Value>171920</Value><Value>171319</Value><Value>170649</Value><Value>171731</Value><Value>170643</Value><Value>171007</Value><Value>172186</Value><Value>171831</Value><Value>172128</Value><Value>172154</Value><Value>170841</Value><Value>171530</Value><Value>171142</Value><Value>171857</Value><Value>170982</Value><Value>171852</Value><Value>171574</Value><Value>171136</Value><Value>172107</Value><Value>171819</Value><Value>171746</Value><Value>171036</Value><Value>171331</Value><Value>170682</Value><Value>171779</Value><Value>171747</Value><Value>171383</Value><Value>170748</Value><Value>170691</Value><Value>170820</Value><Value>170829</Value><Value>171888</Value><Value>172098</Value><Value>172199</Value><Value>171290</Value><Value>170935</Value><Value>171056</Value><Value>171131</Value><Value>171415</Value><Value>171105</Value><Value>171135</Value><Value>171371</Value><Value>171640</Value><Value>171534</Value><Value>171012</Value><Value>172047</Value><Value>172081</Value><Value>171666</Value><Value>172089</Value><Value>172063</Value><Value>171449</Value><Value>171159</Value><Value>171808</Value><Value>171932</Value><Value>170664</Value><Value>172000</Value><Value>171220</Value><Value>170955</Value><Value>170740</Value><Value>171350</Value><Value>171528</Value><Value>171081</Value><Value>171199</Value><Value>171711</Value><Value>171446</Value><Value>171607</Value><Value>171292</Value><Value>170762</Value><Value>171896</Value><Value>170810</Value><Value>170990</Value><Value>171332</Value><Value>171080</Value><Value>171075</Value><Value>172130</Value><Value>171525</Value><Value>171993</Value><Value>172091</Value><Value>171924</Value><Value>172153</Value><Value>170661</Value><Value>171190</Value><Value>171021</Value><Value>172158</Value><Value>171980</Value><Value>171480</Value><Value>171598</Value><Value>171827</Value><Value>172166</Value><Value>171392</Value><Value>171512</Value><Value>171008</Value><Value>171610</Value><Value>171692</Value><Value>171908</Value><Value>171733</Value><Value>170866</Value><Value>171100</Value></Property><Property id="163401" name="PulsarProtocolLog" description="A log from Pulsar. This is the generic super type. Sub types will represent the log of a particular protocol." datatype="LIST<PulsarProtocolLog>" importance="FIX" flag="inheritance:FIX"><Value>171750</Value><Value>171019</Value><Value>171765</Value><Value>171269</Value><Value>170700</Value><Value>171665</Value><Value>171496</Value><Value>170954</Value><Value>170780</Value><Value>171313</Value><Value>171202</Value></Property><Property id="163429" name="ACQRawData" description="A file which is the direct/raw output of Acqknowledge." datatype="ACQRawData" importance="FIX" flag="inheritance:FIX">45506</Property><Property id="163456" name="syncMapValuesFiles" description="DESCRIBE ME!" datatype="LIST<FILE>" importance="FIX" flag="inheritance:FIX"><Value>45508</Value><Value>45509</Value><Value>45510</Value><Value>45511</Value><Value>45512</Value><Value>45513</Value><Value>45514</Value><Value>45515</Value><Value>45516</Value><Value>45517</Value><Value>45518</Value><Value>45519</Value><Value>45520</Value><Value>45521</Value><Value>45522</Value><Value>45523</Value><Value>45524</Value><Value>45525</Value><Value>45526</Value><Value>45527</Value><Value>45528</Value><Value>45529</Value><Value>45530</Value><Value>45531</Value><Value>45532</Value></Property></Record>
-"""))
diff --git a/unittests/test_apiutils.py b/unittests/test_apiutils.py
index 6d7581478e377ce6b41e8a00a2d47bb404d55a0b..df6fe52d5b6f7ceddea791167a2355d7b3bf2fc8 100644
--- a/unittests/test_apiutils.py
+++ b/unittests/test_apiutils.py
@@ -28,9 +28,9 @@
import caosdb as db
from caosdb.apiutils import apply_to_ids
-from .record import testrecord
import pickle
import tempfile
+from .test_property import testrecord
def test_convert_object():
diff --git a/unittests/test_datatype.py b/unittests/test_datatype.py
index 84f3ac7fd77e0f3fda464c5377b682ae67bd54e4..7cc5fd41c74ece160cac44b8e4386061fefd244f 100644
--- a/unittests/test_datatype.py
+++ b/unittests/test_datatype.py
@@ -25,6 +25,7 @@ from caosdb.common import datatype
def test_list():
assert db.LIST("RT") == "LIST<RT>"
+ assert db.LIST(db.RecordType("bla")) == "LIST<bla>"
def test_list_utilites():
diff --git a/unittests/test_property.py b/unittests/test_property.py
index 1d41a200fecb5c9b8e314fecc81ef75b45a6ec79..76ebe8052fa8104992d6f31fc7f73a4065de1215 100644
--- a/unittests/test_property.py
+++ b/unittests/test_property.py
@@ -23,35 +23,52 @@
#
"""Tests for the Property class."""
# pylint: disable=missing-docstring
-from nose.tools import (assert_is_not_none as there, assert_true as tru,
- assert_equal as eq)
-from caosdb import Entity, Property, configure_connection
-from caosdb.connection.mockup import MockUpServerConnection
+from lxml import etree
+from caosdb import Entity, Property, Record
-
-def setup_module():
- there(Property)
- configure_connection(url="unittests", username="testuser",
- password="testpassword", timeout=200,
- implementation=MockUpServerConnection)
-
-
-def hat(obj, attr):
- tru(hasattr(obj, attr))
+parser = etree.XMLParser(remove_comments=True)
+testrecord = Record._from_xml(Record(),
+ etree.parse("unittests/test_record.xml",
+ parser).getroot())
def test_is_entity():
prop = Property()
- tru(isinstance(prop, Entity))
+ assert isinstance(prop, Entity)
def test_instance_variables():
prop = Property()
- hat(prop, "datatype")
- hat(prop, "unit")
- hat(prop, "value")
+ assert hasattr(prop, "datatype")
+ assert hasattr(prop, "unit")
+ assert hasattr(prop, "value")
+
+
+def test_null_empty_text_value_1():
+ assert testrecord.get_property("LISTofTEXT").value == ["One", "Two", "Three", None, ""]
+
+
+def test_null_empty_text_value_2():
+ assert testrecord.get_property("NULLTEXT1").value is None
+
+
+def test_null_empty_text_value_3():
+ assert testrecord.get_property("NULLTEXT2").value is None
+
+
+def test_null_empty_text_value_4():
+ assert testrecord.get_property("EMPTYTEXT1").value == ""
+
+
+def test_null_empty_text_value_5():
+ assert testrecord.get_property("EMPTYTEXT2").value == ""
+
+
+def test_list_of_references_with_null():
+ assert testrecord.get_property("MultiRecRecording").value[0] is None
+ assert testrecord.get_property("MultiRecRecording").value[1] == 170651
def test_role():
prop = Property()
- eq(prop.role, "Property")
+ assert prop.role == "Property"
diff --git a/unittests/test_record.py b/unittests/test_record.py
index 001f91a726ae8c532a35a6d4875f434bedd3bbce..3b4eb4bbd34110706f7b0b1e88daac6c070dc1c6 100644
--- a/unittests/test_record.py
+++ b/unittests/test_record.py
@@ -26,40 +26,24 @@
# pylint: disable=missing-docstring
import unittest
-from nose.tools import assert_equal as eq
-from nose.tools import assert_is_not_none as there
-from nose.tools import assert_true as tru
-
-from caosdb import Entity, Record, configure_connection
-from caosdb.connection.mockup import MockUpServerConnection
-
-
-def setup_module():
- there(Record)
- configure_connection(url="unittests", username="testuser",
- password="testpassword", timeout=200,
- implementation=MockUpServerConnection)
-
-
-def hat(obj, attr):
- tru(hasattr(obj, attr))
+from caosdb import Entity, Record
def test_is_entity():
record = Record()
- tru(isinstance(record, Entity))
+ assert isinstance(record, Entity)
def test_role():
record = Record()
- eq(record.role, "Record")
+ assert record.role == "Record"
class TestRecord(unittest.TestCase):
def test_property_access(self):
rec = Record()
rec.add_property("Prop")
- self.assertIsNone(rec.get_property("Pop"))
- self.assertIsNotNone(rec.get_property("Prop"))
- self.assertIsNotNone(rec.get_property("prop"))
- self.assertIsNotNone(rec.get_property("prOp"))
+ assert rec.get_property("Pop") is None
+ assert rec.get_property("Prop") is not None
+ assert rec.get_property("prop") is not None
+ assert rec.get_property("prOp") is not None
diff --git a/unittests/test_record.xml b/unittests/test_record.xml
new file mode 100644
index 0000000000000000000000000000000000000000..5567e59050fdbcd07ce9b13cdc640c7bccf6c165
--- /dev/null
+++ b/unittests/test_record.xml
@@ -0,0 +1,330 @@
+<Record id="171179">
+ <TransactionBenchmark></TransactionBenchmark>
+ <Parent description="Experiment for the LEAP project." id="163454" name="LeapExperiment"/>
+ <Property datatype="TEXT" description="A unique identifier for experiments" flag="inheritance:FIX" id="163414" importance="FIX" name="experimentId">KCdSYWJiaXQnLCAnZXhfdml2bycsICdzeW5jaHJvbml6YXRpb25fbWFwJywgTm9uZSwgJzIwMTctMDgtMTEnLCBOb25lLCBOb25lKQ==</Property>
+ <Property datatype="LIST<TEXT>" id="568765" importance="FIX" name="LISTofTEXT">
+ <Value>One</Value>
+ <Value>Two</Value>
+ <Value>Three</Value>
+ <Value></Value><!-- NULL Value-->
+ <Value>
+ <EmptyString/>
+ </Value>
+ </Property>
+ <Property datatype="TEXT" id="568765" importance="FIX" name="EMPTYTEXT1">
+ <Value>
+ <EmptyString/>
+ </Value>
+ </Property>
+ <Property datatype="TEXT" id="568765" importance="FIX" name="EMPTYTEXT2">
+ <EmptyString/>
+ </Property>
+ <Property datatype="TEXT" id="568765" importance="FIX" name="NULLTEXT1"></Property>
+ <Property datatype="TEXT" id="568765" importance="FIX" name="NULLTEXT2">
+ <Value></Value><!-- NULL Value -->
+ </Property>
+ <Property datatype="DATETIME" description="A calendar date. When something took place." flag="inheritance:FIX" id="163442" importance="FIX" name="date">2017-08-11</Property>
+ <Property datatype="TEXT" description="How the experiment was done: IN_VIVO or EX_VIVO." flag="inheritance:FIX" id="163399" importance="FIX" name="vivoness">ex_vivo</Property>
+ <Property datatype="TEXT" description="The species of the experimental animal." flag="inheritance:FIX" id="163418" importance="FIX" name="species">Rabbit</Property>
+ <Property datatype="ExperimentSeries" description="A collection of [Experiment] records which have the same [aim]." flag="inheritance:FIX" id="163449" importance="FIX" name="ExperimentSeries">163386</Property>
+ <Property datatype="LIST<MultiRecRecording>" flag="inheritance:FIX" id="163397" importance="FIX" name="MultiRecRecording">
+ <Value></Value>
+ <Value>170651</Value>
+ <Value>171701</Value>
+ <Value>172074</Value>
+ <Value>171408</Value>
+ <Value>171687</Value>
+ <Value>170791</Value>
+ <Value>171115</Value>
+ <Value>171893</Value>
+ <Value>171237</Value>
+ <Value>171309</Value>
+ <Value>170899</Value>
+ <Value>171048</Value>
+ <Value>171077</Value>
+ <Value>171723</Value>
+ <Value>171085</Value>
+ <Value>171812</Value>
+ <Value>171829</Value>
+ <Value>171669</Value>
+ <Value>170695</Value>
+ <Value>170875</Value>
+ <Value>171751</Value>
+ <Value>171412</Value>
+ <Value>172204</Value>
+ <Value>170997</Value>
+ <Value>171490</Value>
+ <Value>171504</Value>
+ <Value>170977</Value>
+ <Value>171895</Value>
+ <Value>172233</Value>
+ <Value>171261</Value>
+ <Value>171318</Value>
+ <Value>171014</Value>
+ <Value>171132</Value>
+ <Value>171575</Value>
+ <Value>172217</Value>
+ <Value>171638</Value>
+ <Value>170656</Value>
+ <Value>171927</Value>
+ <Value>172232</Value>
+ <Value>171864</Value>
+ <Value>171564</Value>
+ <Value>171090</Value>
+ <Value>171633</Value>
+ <Value>171456</Value>
+ <Value>171755</Value>
+ <Value>170641</Value>
+ <Value>172144</Value>
+ <Value>171872</Value>
+ <Value>171619</Value>
+ <Value>171180</Value>
+ <Value>172019</Value>
+ <Value>171193</Value>
+ <Value>171069</Value>
+ <Value>171643</Value>
+ <Value>171789</Value>
+ <Value>170785</Value>
+ <Value>170904</Value>
+ <Value>171130</Value>
+ <Value>171098</Value>
+ <Value>171241</Value>
+ <Value>171796</Value>
+ <Value>171776</Value>
+ <Value>171175</Value>
+ <Value>171112</Value>
+ <Value>171514</Value>
+ <Value>171854</Value>
+ <Value>170962</Value>
+ <Value>171818</Value>
+ <Value>170745</Value>
+ <Value>171149</Value>
+ <Value>170639</Value>
+ <Value>171508</Value>
+ <Value>170800</Value>
+ <Value>171141</Value>
+ <Value>171414</Value>
+ <Value>171325</Value>
+ <Value>172168</Value>
+ <Value>171184</Value>
+ <Value>172083</Value>
+ <Value>172029</Value>
+ <Value>171556</Value>
+ <Value>172195</Value>
+ <Value>170789</Value>
+ <Value>171300</Value>
+ <Value>172230</Value>
+ <Value>171720</Value>
+ <Value>171341</Value>
+ <Value>171937</Value>
+ <Value>171673</Value>
+ <Value>172106</Value>
+ <Value>171281</Value>
+ <Value>171897</Value>
+ <Value>171108</Value>
+ <Value>172014</Value>
+ <Value>170867</Value>
+ <Value>171531</Value>
+ <Value>171674</Value>
+ <Value>172077</Value>
+ <Value>170944</Value>
+ <Value>171228</Value>
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