diff --git a/CHANGELOG.md b/CHANGELOG.md
index f8d4bfd9f9ba81c7fbdae5d539fdaa8abd60bac5..65397f49e11326b5a0e0b1b7b1e1ecba3158de3a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -19,6 +19,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Deprecated ###
+- getOriginUrlIn, getDiffIn, getBranchIn, getCommitIn (formerly apiutils) have been
+ moved to caosdb.utils.git_utils
+
### Removed ###
### Fixed ###
diff --git a/src/caosdb/apiutils.py b/src/caosdb/apiutils.py
index 81358cd350be4309f8311c99563953fcdbf2401e..7a353b28b65eadca97578731b825bcf366098934 100644
--- a/src/caosdb/apiutils.py
+++ b/src/caosdb/apiutils.py
@@ -27,21 +27,20 @@
"""
import logging
-import sys
-import tempfile
import warnings
from collections.abc import Iterable
-from subprocess import call
-from typing import Optional, Any, Dict, List
+from typing import Any, Dict, List
-from caosdb.common.datatype import (BOOLEAN, DATETIME, DOUBLE, FILE, INTEGER,
- REFERENCE, TEXT, is_reference)
-from caosdb.common.models import (Container, Entity, File, Property, Query,
+from caosdb.common.datatype import is_reference
+from caosdb.common.models import (Container, Entity, File, Property,
Record, RecordType, execute_query,
- get_config, SPECIAL_ATTRIBUTES)
+ SPECIAL_ATTRIBUTES)
from caosdb.exceptions import CaosDBException
+from caosdb.utils.git_utils import (get_origin_url_in, get_diff_in,
+ get_branch_in, get_commit_in)
+
logger = logging.getLogger(__name__)
@@ -148,51 +147,35 @@ def retrieve_entities_with_ids(entities):
def getOriginUrlIn(folder):
- """return the Fetch URL of the git repository in the given folder."""
- with tempfile.NamedTemporaryFile(delete=False, mode="w") as t:
- call(["git", "remote", "show", "origin"], stdout=t, cwd=folder)
- with open(t.name, "r") as t:
- urlString = "Fetch URL:"
-
- for line in t.readlines():
- if urlString in line:
- return line[line.find(urlString) + len(urlString):].strip()
-
- return None
+ warnings.warn("""
+ This function is deprecated and will be removed with the next release.
+ Please use the caosdb.utils.git_utils.get_origin_url_in instead.""",
+ DeprecationWarning)
+ return get_origin_url_in(folder)
def getDiffIn(folder, save_dir=None):
- """returns the name of a file where the out put of "git diff" in the given
- folder is stored."""
- with tempfile.NamedTemporaryFile(delete=False, mode="w", dir=save_dir) as t:
- call(["git", "diff"], stdout=t, cwd=folder)
-
- return t.name
+ warnings.warn("""
+ This function is deprecated and will be removed with the next release.
+ Please use the caosdb.utils.git_utils.get_diff_in instead.""",
+ DeprecationWarning)
+ return get_diff_in(folder, save_dir)
def getBranchIn(folder):
- """returns the current branch of the git repository in the given folder.
-
- The command "git branch" is called in the given folder and the
- output is returned
- """
- with tempfile.NamedTemporaryFile(delete=False, mode="w") as t:
- call(["git", "rev-parse", "--abbrev-ref", "HEAD"], stdout=t, cwd=folder)
- with open(t.name, "r") as t:
- return t.readline().strip()
+ warnings.warn("""
+ This function is deprecated and will be removed with the next release.
+ Please use the caosdb.utils.git_utils.get_branch_in instead.""",
+ DeprecationWarning)
+ return get_branch_in(folder)
def getCommitIn(folder):
- """returns the commit hash in of the git repository in the given folder.
-
- The command "git log -1 --format=%h" is called in the given folder
- and the output is returned
- """
-
- with tempfile.NamedTemporaryFile(delete=False, mode="w") as t:
- call(["git", "log", "-1", "--format=%h"], stdout=t, cwd=folder)
- with open(t.name, "r") as t:
- return t.readline().strip()
+ warnings.warn("""
+ This function is deprecated and will be removed with the next release.
+ Please use the caosdb.utils.git_utils.get_commit_in instead.""",
+ DeprecationWarning)
+ return get_commit_in(folder)
def compare_entities(old_entity: Entity, new_entity: Entity,
diff --git a/src/caosdb/utils/git_utils.py b/src/caosdb/utils/git_utils.py
new file mode 100644
index 0000000000000000000000000000000000000000..98408fe22023e182fe9c9906a17f7d1a414dc5b3
--- /dev/null
+++ b/src/caosdb/utils/git_utils.py
@@ -0,0 +1,84 @@
+# -*- coding: utf-8 -*-
+#
+# This file is a part of the CaosDB Project.
+#
+# Copyright (C) 2018 Research Group Biomedical Physics,
+# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
+# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
+# Copyright (C) 2020-2022 IndiScale GmbH <info@indiscale.com>
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as
+# published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU Affero General Public License for more details.
+#
+# You should have received a copy of the GNU Affero General Public License
+# along with this program. If not, see <https://www.gnu.org/licenses/>.
+#
+# ** end header
+#
+"""git-utils: Some functions for retrieving information about git repositories.
+
+"""
+
+import logging
+import tempfile
+
+from subprocess import call
+
+logger = logging.getLogger(__name__)
+
+
+
+
+def get_origin_url_in(folder: str):
+ """return the Fetch URL of the git repository in the given folder."""
+ with tempfile.NamedTemporaryFile(delete=False, mode="w") as t:
+ call(["git", "remote", "show", "origin"], stdout=t, cwd=folder)
+ with open(t.name, "r") as t:
+ urlString = "Fetch URL:"
+
+ for line in t.readlines():
+ if urlString in line:
+ return line[line.find(urlString) + len(urlString):].strip()
+
+ return None
+
+
+def get_diff_in(folder: str, save_dir=None):
+ """returns the name of a file where the out put of "git diff" in the given
+ folder is stored."""
+ with tempfile.NamedTemporaryFile(delete=False, mode="w", dir=save_dir) as t:
+ call(["git", "diff"], stdout=t, cwd=folder)
+
+ return t.name
+
+
+def get_branch_in(folder: str):
+ """returns the current branch of the git repository in the given folder.
+
+ The command "git branch" is called in the given folder and the
+ output is returned
+ """
+ with tempfile.NamedTemporaryFile(delete=False, mode="w") as t:
+ call(["git", "rev-parse", "--abbrev-ref", "HEAD"], stdout=t, cwd=folder)
+ with open(t.name, "r") as t:
+ return t.readline().strip()
+
+
+def get_commit_in(folder: str):
+ """returns the commit hash in of the git repository in the given folder.
+
+ The command "git log -1 --format=%h" is called in the given folder
+ and the output is returned
+ """
+
+ with tempfile.NamedTemporaryFile(delete=False, mode="w") as t:
+ call(["git", "log", "-1", "--format=%h"], stdout=t, cwd=folder)
+ with open(t.name, "r") as t:
+ return t.readline().strip()