From 652c327312aecdde34c048fe62e9b874f2634e79 Mon Sep 17 00:00:00 2001
From: Daniel <d.hornung@indiscale.com>
Date: Mon, 8 May 2023 11:46:53 +0200
Subject: [PATCH] WIP: Rename caosdb -> linkahead
---
.gitlab-ci.yml | 2 +-
Makefile | 4 ++--
RELEASE_GUIDELINES.md | 2 +-
examples/server_side_script.py | 2 +-
examples/set_permissions.py | 2 +-
src/doc/Makefile | 2 +-
src/doc/gallery/Makefile | 2 +-
src/doc/gallery/curator_permissions.py | 2 +-
src/linkahead/__init__.py | 22 +++++++++----------
src/linkahead/apiutils.py | 8 +++----
src/linkahead/cached.py | 2 +-
src/linkahead/common/administration.py | 8 +++----
src/linkahead/common/datatype.py | 4 ++--
src/linkahead/common/models.py | 22 +++++++++----------
src/linkahead/common/state.py | 2 +-
src/linkahead/common/utils.py | 2 +-
src/linkahead/common/versioning.py | 4 ++--
src/linkahead/configuration.py | 2 +-
.../connection/authentication/auth_token.py | 6 ++---
.../external_credentials_provider.py | 2 +-
.../connection/authentication/input.py | 2 +-
.../connection/authentication/interface.py | 10 ++++-----
.../connection/authentication/keyring.py | 4 ++--
.../connection/authentication/pass.py | 4 ++--
.../connection/authentication/plain.py | 2 +-
.../authentication/unauthenticated.py | 4 ++--
src/linkahead/connection/connection.py | 8 +++----
src/linkahead/connection/encode.py | 2 +-
src/linkahead/connection/interface.py | 2 +-
src/linkahead/connection/mockup.py | 2 +-
src/linkahead/connection/utils.py | 2 +-
src/linkahead/exceptions.py | 2 +-
src/linkahead/high_level_api.py | 6 ++---
...sdb-ini.yml => schema-pylinkahead-ini.yml} | 0
.../utils/checkFileSystemConsistency.py | 4 ++--
src/linkahead/utils/create_revision.py | 6 ++---
src/linkahead/utils/get_entity.py | 2 +-
src/linkahead/utils/linkahead_admin.py | 10 ++++-----
src/linkahead/utils/plantuml.py | 6 ++---
src/linkahead/utils/register_tests.py | 6 ++---
src/linkahead/utils/server_side_scripting.py | 8 +++----
src/linkahead/yamlapi.py | 8 +++----
unittests/test_acl.py | 4 ++--
unittests/test_add_property.py | 4 ++--
unittests/test_administraction.py | 6 ++---
unittests/test_apiutils.py | 10 ++++-----
unittests/test_authentication_auth_token.py | 12 +++++-----
unittests/test_authentication_external.py | 4 ++--
unittests/test_authentication_keyring.py | 4 ++--
unittests/test_authentication_pass.py | 2 +-
unittests/test_authentication_plain.py | 4 ++--
.../test_authentication_unauthenticated.py | 12 +++++-----
unittests/test_cached.py | 6 ++---
unittests/test_concrete_property.py | 8 +++----
unittests/test_configuration.py | 4 ++--
unittests/test_connection.py | 16 +++++++-------
unittests/test_connection_utils.py | 16 +++++++-------
unittests/test_container.py | 4 ++--
unittests/test_datatype.py | 8 +++----
unittests/test_entity.py | 6 ++---
unittests/test_error_handling.py | 8 +++----
unittests/test_file.py | 6 ++---
unittests/test_high_level_api.py | 12 +++++-----
unittests/test_issues.py | 4 ++--
unittests/test_message.py | 8 +++----
unittests/test_plantuml.py | 6 ++---
unittests/test_property.py | 6 ++---
unittests/test_query.py | 4 ++--
unittests/test_record.py | 4 ++--
unittests/test_record_type.py | 6 ++---
unittests/test_schema.py | 4 ++--
unittests/test_server_side_scripting.py | 8 +++----
unittests/test_state.py | 6 ++---
unittests/test_utils.py | 4 ++--
unittests/test_versioning.py | 8 +++----
unittests/test_yamlapi.py | 4 ++--
76 files changed, 215 insertions(+), 215 deletions(-)
rename src/linkahead/{schema-pycaosdb-ini.yml => schema-pylinkahead-ini.yml} (100%)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0430a4f6..24017531 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,5 +1,5 @@
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/Makefile b/Makefile
index 0a0888ad..d15c830d 100644
--- a/Makefile
+++ b/Makefile
@@ -1,5 +1,5 @@
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
# Copyright (C) 2020 Daniel Hornung <d.hornung@indiscale.com>
@@ -40,7 +40,7 @@ style:
.PHONY: style
lint:
- pylint --unsafe-load-any-extension=y -d all -e E,F src/caosdb/common
+ pylint --unsafe-load-any-extension=y -d all -e E,F src/linkahead/common
.PHONY: lint
unittest:
diff --git a/RELEASE_GUIDELINES.md b/RELEASE_GUIDELINES.md
index 95ee8e31..b3025f00 100644
--- a/RELEASE_GUIDELINES.md
+++ b/RELEASE_GUIDELINES.md
@@ -1,7 +1,7 @@
# Release Guidelines for the CaosDB Python Client Library
This document specifies release guidelines in addition to the general release
-guidelines of the CaosDB Project
+guidelines of the LinkAhead Project
([RELEASE_GUIDELINES.md](https://gitlab.com/caosdb/caosdb/blob/dev/RELEASE_GUIDELINES.md))
## General Prerequisites
diff --git a/examples/server_side_script.py b/examples/server_side_script.py
index 71bd9c05..0c5013eb 100755
--- a/examples/server_side_script.py
+++ b/examples/server_side_script.py
@@ -2,7 +2,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/examples/set_permissions.py b/examples/set_permissions.py
index 8162b11b..8eef49fe 100755
--- a/examples/set_permissions.py
+++ b/examples/set_permissions.py
@@ -1,7 +1,7 @@
#!/usr/bin/env python3
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (c) 2019 IndiScale GmbH
# Copyright (c) 2019 Daniel Hornung <d.hornung@indiscale.com>
diff --git a/src/doc/Makefile b/src/doc/Makefile
index 64219c59..0f1d3c6a 100644
--- a/src/doc/Makefile
+++ b/src/doc/Makefile
@@ -1,5 +1,5 @@
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
# Copyright (C) 2020 Daniel Hornung <d.hornung@indiscale.com>
diff --git a/src/doc/gallery/Makefile b/src/doc/gallery/Makefile
index 658f9a6a..b8ed911d 100644
--- a/src/doc/gallery/Makefile
+++ b/src/doc/gallery/Makefile
@@ -1,4 +1,4 @@
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2022 IndiScale GmbH <info@indiscale.com>
# Copyright (C) 2022 Daniel Hornung <d.hornung@indiscale.com>
diff --git a/src/doc/gallery/curator_permissions.py b/src/doc/gallery/curator_permissions.py
index 16b4b7f6..36eb4500 100644
--- a/src/doc/gallery/curator_permissions.py
+++ b/src/doc/gallery/curator_permissions.py
@@ -1,7 +1,7 @@
#!/usr/bin/env python3
# encoding: utf-8
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2022 Indiscale GmbH <info@indiscale.com>
# Copyright (C) 2022 Florian Spreckelsen <f.spreckelsen@indiscale.com>
diff --git a/src/linkahead/__init__.py b/src/linkahead/__init__.py
index acf323e8..0bc70972 100644
--- a/src/linkahead/__init__.py
+++ b/src/linkahead/__init__.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -34,24 +34,24 @@ from os import environ, getcwd
from os.path import expanduser, join
# Import of convenience methods:
-import caosdb.apiutils
-from caosdb.common import administration
-from caosdb.common.datatype import (BOOLEAN, DATETIME, DOUBLE, FILE, INTEGER,
+import linkahead.apiutils
+from linkahead.common import administration
+from linkahead.common.datatype import (BOOLEAN, DATETIME, DOUBLE, FILE, INTEGER,
LIST, REFERENCE, TEXT)
-from caosdb.common.state import State, Transition
+from linkahead.common.state import State, Transition
# Import of the basic API classes:
-from caosdb.common.models import (ACL, ALL, FIX, NONE, OBLIGATORY, RECOMMENDED,
+from linkahead.common.models import (ACL, ALL, FIX, NONE, OBLIGATORY, RECOMMENDED,
SUGGESTED, Container, DropOffBox, Entity,
File, Info, Message, Permissions, Property,
Query, QueryTemplate, Record, RecordType,
delete, execute_query, get_global_acl,
get_known_permissions, raise_errors)
-from caosdb.utils.get_entity import get_entity_by_name, get_entity_by_path, get_entity_by_id
-from caosdb.configuration import _read_config_files, configure, get_config
-from caosdb.connection.connection import configure_connection, get_connection
-from caosdb.exceptions import *
+from linkahead.utils.get_entity import get_entity_by_name, get_entity_by_path, get_entity_by_id
+from linkahead.configuration import _read_config_files, configure, get_config
+from linkahead.connection.connection import configure_connection, get_connection
+from linkahead.exceptions import *
try:
- from caosdb.version import version as __version__
+ from linkahead.version import version as __version__
except ModuleNotFoundError:
version = "uninstalled"
__version__ = version
diff --git a/src/linkahead/apiutils.py b/src/linkahead/apiutils.py
index a5a936c5..c522e34e 100644
--- a/src/linkahead/apiutils.py
+++ b/src/linkahead/apiutils.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -35,12 +35,12 @@ from collections.abc import Iterable
from subprocess import call
from typing import Optional, Any, Dict, List
-from caosdb.common.datatype import (BOOLEAN, DATETIME, DOUBLE, FILE, INTEGER,
+from linkahead.common.datatype import (BOOLEAN, DATETIME, DOUBLE, FILE, INTEGER,
REFERENCE, TEXT, is_reference)
-from caosdb.common.models import (Container, Entity, File, Property, Query,
+from linkahead.common.models import (Container, Entity, File, Property, Query,
Record, RecordType, execute_query,
get_config, SPECIAL_ATTRIBUTES)
-from caosdb.exceptions import CaosDBException
+from linkahead.exceptions import CaosDBException
logger = logging.getLogger(__name__)
diff --git a/src/linkahead/cached.py b/src/linkahead/cached.py
index 4f735bb8..33124d61 100644
--- a/src/linkahead/cached.py
+++ b/src/linkahead/cached.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2023 IndiScale GmbH <info@indiscale.com>
# Copyright (C) 2023 Henrik tom Wörden <h.tomwoerden@indiscale.com>
diff --git a/src/linkahead/common/administration.py b/src/linkahead/common/administration.py
index a27aaf04..12c738f1 100644
--- a/src/linkahead/common/administration.py
+++ b/src/linkahead/common/administration.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -29,9 +29,9 @@
import re
import string
import random
-from caosdb.common.utils import xml2str
-from caosdb.connection.connection import get_connection
-from caosdb.exceptions import (EntityDoesNotExistError, HTTPClientError,
+from linkahead.common.utils import xml2str
+from linkahead.connection.connection import get_connection
+from linkahead.exceptions import (EntityDoesNotExistError, HTTPClientError,
HTTPForbiddenError, HTTPResourceNotFoundError,
ServerConfigurationException)
from lxml import etree
diff --git a/src/linkahead/common/datatype.py b/src/linkahead/common/datatype.py
index 03ff6d02..50d923d9 100644
--- a/src/linkahead/common/datatype.py
+++ b/src/linkahead/common/datatype.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 IndiScale GmbH
# Copyright (C) 2020 Henrik tom Wörden, IndiScale GmbH
@@ -148,7 +148,7 @@ def get_id_of_datatype(datatype):
EmptyUniqueQueryError
If there is no entity with the name of the datatype.
"""
- from caosdb import execute_query
+ from linkahead import execute_query
if is_list_datatype(datatype):
datatype = get_list_datatype(datatype)
diff --git a/src/linkahead/common/models.py b/src/linkahead/common/models.py
index 9ba54c49..7b6db6d8 100644
--- a/src/linkahead/common/models.py
+++ b/src/linkahead/common/models.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -49,16 +49,16 @@ from random import randint
from tempfile import NamedTemporaryFile
from warnings import warn
-from caosdb.common.datatype import (BOOLEAN, DATETIME, DOUBLE, INTEGER, TEXT,
+from linkahead.common.datatype import (BOOLEAN, DATETIME, DOUBLE, INTEGER, TEXT,
is_list_datatype, is_reference)
-from caosdb.common.state import State
-from caosdb.common.utils import uuid, xml2str
-from caosdb.common.timezone import TimeZone
-from caosdb.common.versioning import Version
-from caosdb.configuration import get_config
-from caosdb.connection.connection import get_connection
-from caosdb.connection.encode import MultipartParam, multipart_encode
-from caosdb.exceptions import (AmbiguousEntityError, AuthorizationError,
+from linkahead.common.state import State
+from linkahead.common.utils import uuid, xml2str
+from linkahead.common.timezone import TimeZone
+from linkahead.common.versioning import Version
+from linkahead.configuration import get_config
+from linkahead.connection.connection import get_connection
+from linkahead.connection.encode import MultipartParam, multipart_encode
+from linkahead.exceptions import (AmbiguousEntityError, AuthorizationError,
CaosDBConnectionError, CaosDBException,
ConsistencyError, EmptyUniqueQueryError,
EntityDoesNotExistError, EntityError,
@@ -529,7 +529,7 @@ class Entity:
Add a simple integer property with the name ``TestProp`` and the value
27 to a Record:
- >>> import caosdb as db
+ >>> import linkahead as db
>>> rec = db.Record(name="TestRec").add_parent(name="TestType")
>>> rec.add_property("TestProp", value=27) # specified by name, you could equally use the property's id if it is known
diff --git a/src/linkahead/common/state.py b/src/linkahead/common/state.py
index cb74022b..82f314e8 100644
--- a/src/linkahead/common/state.py
+++ b/src/linkahead/common/state.py
@@ -1,5 +1,5 @@
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
diff --git a/src/linkahead/common/utils.py b/src/linkahead/common/utils.py
index f0ce740d..b333e3e0 100644
--- a/src/linkahead/common/utils.py
+++ b/src/linkahead/common/utils.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/common/versioning.py b/src/linkahead/common/versioning.py
index 2875486a..64d66609 100644
--- a/src/linkahead/common/versioning.py
+++ b/src/linkahead/common/versioning.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
@@ -27,7 +27,7 @@ Currently this module defines nothing but a single class, `Version`.
"""
from __future__ import absolute_import
-from caosdb.common.utils import xml2str
+from linkahead.common.utils import xml2str
from lxml import etree
diff --git a/src/linkahead/configuration.py b/src/linkahead/configuration.py
index 1c108ac1..fcceba1a 100644
--- a/src/linkahead/configuration.py
+++ b/src/linkahead/configuration.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/connection/authentication/auth_token.py b/src/linkahead/connection/authentication/auth_token.py
index 68812386..761abcc7 100644
--- a/src/linkahead/connection/authentication/auth_token.py
+++ b/src/linkahead/connection/authentication/auth_token.py
@@ -1,7 +1,7 @@
#! -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -29,8 +29,8 @@ An Authentictor which only uses only a pre-supplied authentication token.
"""
from __future__ import absolute_import, unicode_literals, print_function
from .interface import AbstractAuthenticator, CaosDBServerConnection
-from caosdb.connection.utils import auth_token_to_cookie
-from caosdb.exceptions import LoginFailedError
+from linkahead.connection.utils import auth_token_to_cookie
+from linkahead.exceptions import LoginFailedError
def get_authentication_provider():
diff --git a/src/linkahead/connection/authentication/external_credentials_provider.py b/src/linkahead/connection/authentication/external_credentials_provider.py
index 1cf4cefc..91158c90 100644
--- a/src/linkahead/connection/authentication/external_credentials_provider.py
+++ b/src/linkahead/connection/authentication/external_credentials_provider.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/connection/authentication/input.py b/src/linkahead/connection/authentication/input.py
index 7edec7c8..27992073 100644
--- a/src/linkahead/connection/authentication/input.py
+++ b/src/linkahead/connection/authentication/input.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/connection/authentication/interface.py b/src/linkahead/connection/authentication/interface.py
index f2cc5001..ad1147eb 100644
--- a/src/linkahead/connection/authentication/interface.py
+++ b/src/linkahead/connection/authentication/interface.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -28,10 +28,10 @@ Implementing modules muts provide a `get_authentication_provider()` method.
"""
from abc import ABCMeta, abstractmethod, abstractproperty
import logging
-from caosdb.connection.utils import urlencode
-from caosdb.connection.interface import CaosDBServerConnection
-from caosdb.connection.utils import parse_auth_token, auth_token_to_cookie
-from caosdb.exceptions import LoginFailedError
+from linkahead.connection.utils import urlencode
+from linkahead.connection.interface import CaosDBServerConnection
+from linkahead.connection.utils import parse_auth_token, auth_token_to_cookie
+from linkahead.exceptions import LoginFailedError
# meta class compatible with Python 2 *and* 3:
ABC = ABCMeta('ABC', (object, ), {'__slots__': ()})
diff --git a/src/linkahead/connection/authentication/keyring.py b/src/linkahead/connection/authentication/keyring.py
index 99d18413..5ed63634 100644
--- a/src/linkahead/connection/authentication/keyring.py
+++ b/src/linkahead/connection/authentication/keyring.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -30,7 +30,7 @@ retrieve the password.
import sys
import importlib
from getpass import getpass
-from caosdb.exceptions import ConfigurationError
+from linkahead.exceptions import ConfigurationError
from .external_credentials_provider import ExternalCredentialsProvider
from .interface import CredentialsAuthenticator
diff --git a/src/linkahead/connection/authentication/pass.py b/src/linkahead/connection/authentication/pass.py
index 853cdf0e..8067a890 100644
--- a/src/linkahead/connection/authentication/pass.py
+++ b/src/linkahead/connection/authentication/pass.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -28,7 +28,7 @@ password.
"""
from subprocess import check_output, CalledProcessError
-from caosdb.exceptions import ConfigurationError
+from linkahead.exceptions import ConfigurationError
from .interface import CredentialsAuthenticator
from .external_credentials_provider import ExternalCredentialsProvider
diff --git a/src/linkahead/connection/authentication/plain.py b/src/linkahead/connection/authentication/plain.py
index 83dd5929..162cd365 100644
--- a/src/linkahead/connection/authentication/plain.py
+++ b/src/linkahead/connection/authentication/plain.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/connection/authentication/unauthenticated.py b/src/linkahead/connection/authentication/unauthenticated.py
index 65febae8..8c220acd 100644
--- a/src/linkahead/connection/authentication/unauthenticated.py
+++ b/src/linkahead/connection/authentication/unauthenticated.py
@@ -1,7 +1,7 @@
#! -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -30,7 +30,7 @@ cookies.
"""
from __future__ import absolute_import, unicode_literals, print_function
from .interface import AbstractAuthenticator, CaosDBServerConnection
-from caosdb.exceptions import LoginFailedError
+from linkahead.exceptions import LoginFailedError
def get_authentication_provider():
diff --git a/src/linkahead/connection/connection.py b/src/linkahead/connection/connection.py
index 46dadea9..84e9add5 100644
--- a/src/linkahead/connection/connection.py
+++ b/src/linkahead/connection/connection.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -38,8 +38,8 @@ from requests.exceptions import ConnectionError as HTTPConnectionError
from urllib3.poolmanager import PoolManager
from requests.adapters import HTTPAdapter
-from caosdb.configuration import get_config
-from caosdb.exceptions import (CaosDBException, HTTPClientError,
+from linkahead.configuration import get_config
+from linkahead.exceptions import (CaosDBException, HTTPClientError,
ConfigurationError,
CaosDBConnectionError,
HTTPForbiddenError,
@@ -48,7 +48,7 @@ from caosdb.exceptions import (CaosDBException, HTTPClientError,
HTTPServerError,
HTTPURITooLongError)
try:
- from caosdb.version import version
+ from linkahead.version import version
except ModuleNotFoundError:
version = "uninstalled"
diff --git a/src/linkahead/connection/encode.py b/src/linkahead/connection/encode.py
index 0b826cc4..6b328285 100644
--- a/src/linkahead/connection/encode.py
+++ b/src/linkahead/connection/encode.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/connection/interface.py b/src/linkahead/connection/interface.py
index a6f73917..d56900d8 100644
--- a/src/linkahead/connection/interface.py
+++ b/src/linkahead/connection/interface.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/connection/mockup.py b/src/linkahead/connection/mockup.py
index b37670b8..8da79133 100644
--- a/src/linkahead/connection/mockup.py
+++ b/src/linkahead/connection/mockup.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/connection/utils.py b/src/linkahead/connection/utils.py
index 095d4703..90ec6b5b 100644
--- a/src/linkahead/connection/utils.py
+++ b/src/linkahead/connection/utils.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/exceptions.py b/src/linkahead/exceptions.py
index fdd2e11f..97c6d708 100644
--- a/src/linkahead/exceptions.py
+++ b/src/linkahead/exceptions.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/src/linkahead/high_level_api.py b/src/linkahead/high_level_api.py
index 427a095a..e7e9beab 100644
--- a/src/linkahead/high_level_api.py
+++ b/src/linkahead/high_level_api.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -30,12 +30,12 @@ A high level API for accessing CaosDB entities from within python.
This is refactored from apiutils.
"""
-from caosdb.common.datatype import (BOOLEAN, DATETIME, DOUBLE, FILE, INTEGER,
+from linkahead.common.datatype import (BOOLEAN, DATETIME, DOUBLE, FILE, INTEGER,
REFERENCE, TEXT,
is_list_datatype,
get_list_datatype,
is_reference)
-import caosdb as db
+import linkahead as db
from .apiutils import get_type_of_entity_with, create_flat_list
import warnings
diff --git a/src/linkahead/schema-pycaosdb-ini.yml b/src/linkahead/schema-pylinkahead-ini.yml
similarity index 100%
rename from src/linkahead/schema-pycaosdb-ini.yml
rename to src/linkahead/schema-pylinkahead-ini.yml
diff --git a/src/linkahead/utils/checkFileSystemConsistency.py b/src/linkahead/utils/checkFileSystemConsistency.py
index a142c1dd..ddbb085a 100755
--- a/src/linkahead/utils/checkFileSystemConsistency.py
+++ b/src/linkahead/utils/checkFileSystemConsistency.py
@@ -2,7 +2,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -26,7 +26,7 @@
"""requests the server to execute checkFileSystemConsistency job."""
import sys
-import caosdb as db
+import linkahead as db
from argparse import ArgumentParser
from argparse import RawDescriptionHelpFormatter
diff --git a/src/linkahead/utils/create_revision.py b/src/linkahead/utils/create_revision.py
index 419e1c9f..5f6ecc81 100644
--- a/src/linkahead/utils/create_revision.py
+++ b/src/linkahead/utils/create_revision.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -23,8 +23,8 @@
#
"""provides utilities for creating revisions of database entries."""
-import caosdb as db
-from caosdb import INTEGER, LIST
+import linkahead as db
+from linkahead import INTEGER, LIST
def bend_references(from_id, to_id, except_for=None):
diff --git a/src/linkahead/utils/get_entity.py b/src/linkahead/utils/get_entity.py
index a27aafa9..ea9f3228 100644
--- a/src/linkahead/utils/get_entity.py
+++ b/src/linkahead/utils/get_entity.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2023 Henrik tom Wörden <h.tomwoerden@indiscale.com>
# Copyright (C) 2023 IndiScale GmbH <info@indiscale.com>
diff --git a/src/linkahead/utils/linkahead_admin.py b/src/linkahead/utils/linkahead_admin.py
index 09a8f64a..e9a2c09b 100755
--- a/src/linkahead/utils/linkahead_admin.py
+++ b/src/linkahead/utils/linkahead_admin.py
@@ -2,7 +2,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -31,9 +31,9 @@ import getpass
import sys
from argparse import ArgumentParser, RawDescriptionHelpFormatter
-import caosdb as db
-from caosdb import administration as admin
-from caosdb.exceptions import HTTPClientError
+import linkahead as db
+from linkahead import administration as admin
+from linkahead.exceptions import HTTPClientError
__all__ = []
__version__ = 0.3
@@ -412,7 +412,7 @@ USAGE
subparser = subparsers.add_parser(
"delete_user",
- help="Delete a user from caosdb's internal user database.")
+ help="Delete a user from linkahead's internal user database.")
subparser.set_defaults(call=do_delete_user)
subparser.add_argument(metavar='USERNAME', dest="user_name",
help="The name of the user who is to be deleted.")
diff --git a/src/linkahead/utils/plantuml.py b/src/linkahead/utils/plantuml.py
index 6252a489..1f925cbd 100644
--- a/src/linkahead/utils/plantuml.py
+++ b/src/linkahead/utils/plantuml.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -36,8 +36,8 @@ plantuml FILENAME.pu -> FILENAME.png
import os
import shutil
-import caosdb as db
-from caosdb.common.datatype import is_reference, get_referenced_recordtype
+import linkahead as db
+from linkahead.common.datatype import is_reference, get_referenced_recordtype
from typing import List, Optional
diff --git a/src/linkahead/utils/register_tests.py b/src/linkahead/utils/register_tests.py
index 9d0afcbb..3035f69d 100644
--- a/src/linkahead/utils/register_tests.py
+++ b/src/linkahead/utils/register_tests.py
@@ -1,7 +1,7 @@
#!/usr/bin/env python
# encoding: utf-8
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2022 Alexander Schlemmer <alexander.schlemmer@ds.mpg.de>
# Copyright (C) 2022 Timm Fitschen <t.fitschen@indiscale.com>
@@ -19,8 +19,8 @@
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
-import caosdb as db
-from caosdb import administration as admin
+import linkahead as db
+from linkahead import administration as admin
"""
This module implements a registration procedure for integration tests which
diff --git a/src/linkahead/utils/server_side_scripting.py b/src/linkahead/utils/server_side_scripting.py
index 7e5ee439..6a419191 100644
--- a/src/linkahead/utils/server_side_scripting.py
+++ b/src/linkahead/utils/server_side_scripting.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
@@ -28,9 +28,9 @@ Helper functions for calling server-side scripts.
from urllib.parse import quote
from lxml import etree
-from caosdb.connection.connection import get_connection
-from caosdb.connection.utils import urlencode
-from caosdb.connection.encode import (MultipartParam, multipart_encode,
+from linkahead.connection.connection import get_connection
+from linkahead.connection.utils import urlencode
+from linkahead.connection.encode import (MultipartParam, multipart_encode,
ReadableMultiparts)
diff --git a/src/linkahead/yamlapi.py b/src/linkahead/yamlapi.py
index 80bb4b13..ba1f183d 100644
--- a/src/linkahead/yamlapi.py
+++ b/src/linkahead/yamlapi.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -28,9 +28,9 @@ import yaml
from lxml import etree
from lxml.etree import Element
import re
-import caosdb
-import caosdb.common.utils as utils
-from caosdb.connection.connection import get_connection
+import linkahead
+import linkahead.common.utils as utils
+from linkahead.connection.connection import get_connection
import warnings
diff --git a/unittests/test_acl.py b/unittests/test_acl.py
index 633c25ad..c004979f 100644
--- a/unittests/test_acl.py
+++ b/unittests/test_acl.py
@@ -1,6 +1,6 @@
# -*- encoding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2022 Indiscale GmbH <info@indiscale.com>
# Copyright (C) 2022 Timm Fitschen <f.fitschen@indiscale.com>
@@ -18,7 +18,7 @@
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
#
-import caosdb as db
+import linkahead as db
from lxml import etree
diff --git a/unittests/test_add_property.py b/unittests/test_add_property.py
index 0d3183b4..2989adec 100644
--- a/unittests/test_add_property.py
+++ b/unittests/test_add_property.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -24,7 +24,7 @@
# ** end header
#
from pytest import raises
-import caosdb as db
+import linkahead as db
def test_no_parameter():
diff --git a/unittests/test_administraction.py b/unittests/test_administraction.py
index 25a7d0de..7f40aa94 100644
--- a/unittests/test_administraction.py
+++ b/unittests/test_administraction.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -25,8 +25,8 @@
# pylint: disable=missing-docstring
from __future__ import unicode_literals
from pytest import raises
-from caosdb import administration, configure_connection, get_connection
-from caosdb.connection.mockup import MockUpServerConnection, MockUpResponse
+from linkahead import administration, configure_connection, get_connection
+from linkahead.connection.mockup import MockUpServerConnection, MockUpResponse
def setup_module():
diff --git a/unittests/test_apiutils.py b/unittests/test_apiutils.py
index bda381cf..4c15230d 100644
--- a/unittests/test_apiutils.py
+++ b/unittests/test_apiutils.py
@@ -1,5 +1,5 @@
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2022 Florian Spreckelsen <f.spreckelsen@indiscale.com>
@@ -27,13 +27,13 @@
import pytest
-import caosdb as db
-import caosdb.apiutils
-from caosdb.apiutils import (apply_to_ids, compare_entities, create_id_query,
+import linkahead as db
+import linkahead.apiutils
+from linkahead.apiutils import (apply_to_ids, compare_entities, create_id_query,
empty_diff, EntityMergeConflictError,
resolve_reference, merge_entities)
-from caosdb.common.models import SPECIAL_ATTRIBUTES
+from linkahead.common.models import SPECIAL_ATTRIBUTES
def test_apply_to_ids():
diff --git a/unittests/test_authentication_auth_token.py b/unittests/test_authentication_auth_token.py
index d0eb6b90..356eb53c 100644
--- a/unittests/test_authentication_auth_token.py
+++ b/unittests/test_authentication_auth_token.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
@@ -29,11 +29,11 @@ Unit tests for the module caosdb.connection.authentication.auth_token
from __future__ import unicode_literals
from pytest import raises
from unittest.mock import Mock
-from caosdb.connection.authentication import auth_token as at
-from caosdb.connection.mockup import MockUpServerConnection, MockUpResponse
-from caosdb.connection.utils import parse_auth_token
-from caosdb.exceptions import LoginFailedError
-from caosdb import configure_connection
+from linkahead.connection.authentication import auth_token as at
+from linkahead.connection.mockup import MockUpServerConnection, MockUpResponse
+from linkahead.connection.utils import parse_auth_token
+from linkahead.exceptions import LoginFailedError
+from linkahead import configure_connection
def test_get_authentication_provider():
diff --git a/unittests/test_authentication_external.py b/unittests/test_authentication_external.py
index a8fc6f79..66a584ca 100644
--- a/unittests/test_authentication_external.py
+++ b/unittests/test_authentication_external.py
@@ -1,7 +1,7 @@
#! -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -29,7 +29,7 @@ Tests for the external_credentials_provider modul.
from __future__ import unicode_literals
import logging
from pytest import raises
-from caosdb.connection.authentication import (
+from linkahead.connection.authentication import (
external_credentials_provider as ecp
)
diff --git a/unittests/test_authentication_keyring.py b/unittests/test_authentication_keyring.py
index 71551449..d3b07479 100644
--- a/unittests/test_authentication_keyring.py
+++ b/unittests/test_authentication_keyring.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -27,7 +27,7 @@ Tests for the caosdb.connection.authentication.keyring module.
"""
import sys
from pytest import raises
-from caosdb.connection.authentication.keyring import KeyringCaller
+from linkahead.connection.authentication.keyring import KeyringCaller
def test_initialization():
diff --git a/unittests/test_authentication_pass.py b/unittests/test_authentication_pass.py
index 45bda08a..f3f5b671 100644
--- a/unittests/test_authentication_pass.py
+++ b/unittests/test_authentication_pass.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
diff --git a/unittests/test_authentication_plain.py b/unittests/test_authentication_plain.py
index 146b5988..55fbc459 100644
--- a/unittests/test_authentication_plain.py
+++ b/unittests/test_authentication_plain.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -28,7 +28,7 @@ Unit tests for the modul caosdb.connection.authentication.plain.
from __future__ import unicode_literals
-from caosdb.connection.authentication.plain import PlainTextCredentialsProvider
+from linkahead.connection.authentication.plain import PlainTextCredentialsProvider
from pytest import raises
diff --git a/unittests/test_authentication_unauthenticated.py b/unittests/test_authentication_unauthenticated.py
index 45a709fc..efd419b3 100644
--- a/unittests/test_authentication_unauthenticated.py
+++ b/unittests/test_authentication_unauthenticated.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
@@ -29,11 +29,11 @@ Unit tests for the module caosdb.connection.authentication.unauthenticated.
from __future__ import unicode_literals
from pytest import raises
from unittest.mock import Mock
-from caosdb.connection.authentication import unauthenticated
-from caosdb.connection.mockup import MockUpServerConnection, MockUpResponse
-from caosdb.connection.utils import parse_auth_token
-from caosdb.exceptions import LoginFailedError
-from caosdb import configure_connection
+from linkahead.connection.authentication import unauthenticated
+from linkahead.connection.mockup import MockUpServerConnection, MockUpResponse
+from linkahead.connection.utils import parse_auth_token
+from linkahead.exceptions import LoginFailedError
+from linkahead import configure_connection
from .test_authentication_auth_token import response_with_auth_token
diff --git a/unittests/test_cached.py b/unittests/test_cached.py
index ce302d67..d49b7fb3 100644
--- a/unittests/test_cached.py
+++ b/unittests/test_cached.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2023 Henrik tom Wörden <h.tomwoerden@indiscale.com>
# Copyright (C) 2023 IndiScale GmbH <info@indiscale.com>
@@ -21,10 +21,10 @@
""" Test the caosdb.cached module """
-from caosdb.cached import (cached_get_entity_by, cache_clear, cache_info, cache_fill,
+from linkahead.cached import (cached_get_entity_by, cache_clear, cache_info, cache_fill,
AccessType, cache_initialize, cached_query)
from unittest.mock import patch
-import caosdb as db
+import linkahead as db
from copy import deepcopy
import pytest
diff --git a/unittests/test_concrete_property.py b/unittests/test_concrete_property.py
index 0e5c2853..e70668f0 100644
--- a/unittests/test_concrete_property.py
+++ b/unittests/test_concrete_property.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -24,9 +24,9 @@
"""Tests for the _ConcreteProperty class."""
-from caosdb import configure_connection
-from caosdb.common.models import _ConcreteProperty
-from caosdb.connection.mockup import MockUpServerConnection
+from linkahead import configure_connection
+from linkahead.common.models import _ConcreteProperty
+from linkahead.connection.mockup import MockUpServerConnection
# pylint: disable=missing-docstring
from nose.tools import assert_equal as eq
from nose.tools import assert_is_not_none as there
diff --git a/unittests/test_configuration.py b/unittests/test_configuration.py
index b135e7cd..6ef147a8 100644
--- a/unittests/test_configuration.py
+++ b/unittests/test_configuration.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -23,7 +23,7 @@
#
import pytest
-import caosdb as db
+import linkahead as db
from os import environ, getcwd, remove
from os.path import expanduser, isfile, join
from pytest import raises
diff --git a/unittests/test_connection.py b/unittests/test_connection.py
index 6cc23d87..a31ca626 100644
--- a/unittests/test_connection.py
+++ b/unittests/test_connection.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -28,16 +28,16 @@ from __future__ import print_function, unicode_literals
import re
from builtins import bytes, str # pylint: disable=redefined-builtin
-from caosdb import execute_query
-from caosdb.configuration import _reset_config, get_config
-from caosdb.connection.authentication.interface import CredentialsAuthenticator
-from caosdb.connection.connection import (CaosDBServerConnection,
+from linkahead import execute_query
+from linkahead.configuration import _reset_config, get_config
+from linkahead.connection.authentication.interface import CredentialsAuthenticator
+from linkahead.connection.connection import (CaosDBServerConnection,
_DefaultCaosDBServerConnection,
configure_connection)
-from caosdb.connection.mockup import (MockUpResponse, MockUpServerConnection,
+from linkahead.connection.mockup import (MockUpResponse, MockUpServerConnection,
_request_log_message)
-from caosdb.connection.utils import make_uri_path, quote, urlencode
-from caosdb.exceptions import (ConfigurationError, LoginFailedError,
+from linkahead.connection.utils import make_uri_path, quote, urlencode
+from linkahead.exceptions import (ConfigurationError, LoginFailedError,
CaosDBConnectionError)
from nose.tools import assert_equal as eq
from nose.tools import assert_false as falz
diff --git a/unittests/test_connection_utils.py b/unittests/test_connection_utils.py
index 3890ae05..e07eab42 100644
--- a/unittests/test_connection_utils.py
+++ b/unittests/test_connection_utils.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -28,16 +28,16 @@ from pytest import raises
from nose.tools import (assert_equal as eq, assert_raises as raiz, assert_true
as tru, assert_is_not_none as there, assert_false as
falz)
-from caosdb.exceptions import ConfigurationError, LoginFailedError
-from caosdb.connection.utils import parse_auth_token, auth_token_to_cookie
-from caosdb.connection.connection import (
+from linkahead.exceptions import ConfigurationError, LoginFailedError
+from linkahead.connection.utils import parse_auth_token, auth_token_to_cookie
+from linkahead.connection.connection import (
configure_connection, CaosDBServerConnection,
_DefaultCaosDBServerConnection)
-from caosdb.connection.mockup import (MockUpServerConnection, MockUpResponse,
+from linkahead.connection.mockup import (MockUpServerConnection, MockUpResponse,
_request_log_message)
-from caosdb.configuration import get_config, _reset_config
-from caosdb.connection.authentication.interface import CredentialsAuthenticator
-from caosdb import execute_query
+from linkahead.configuration import get_config, _reset_config
+from linkahead.connection.authentication.interface import CredentialsAuthenticator
+from linkahead import execute_query
def setup_module():
diff --git a/unittests/test_container.py b/unittests/test_container.py
index 0ac4be44..113dd622 100644
--- a/unittests/test_container.py
+++ b/unittests/test_container.py
@@ -2,7 +2,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
@@ -25,7 +25,7 @@
"""Tests for the Container class."""
from __future__ import absolute_import
-import caosdb as db
+import linkahead as db
def test_get_property_values():
diff --git a/unittests/test_datatype.py b/unittests/test_datatype.py
index 9b3c6267..5a5e82cc 100644
--- a/unittests/test_datatype.py
+++ b/unittests/test_datatype.py
@@ -1,5 +1,5 @@
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (c) 2020 IndiScale GmbH
# Copyright (c) 2020 Daniel Hornung (d.hornung@indiscale.com)
@@ -19,9 +19,9 @@
#
# ** end header
from pytest import raises
-import caosdb as db
-from caosdb.common import datatype
-from caosdb.common.models import _parse_value
+import linkahead as db
+from linkahead.common import datatype
+from linkahead.common.models import _parse_value
def test_list():
diff --git a/unittests/test_entity.py b/unittests/test_entity.py
index f2891fda..f91613a0 100644
--- a/unittests/test_entity.py
+++ b/unittests/test_entity.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -27,9 +27,9 @@ import unittest
from lxml import etree
import os
-from caosdb import (INTEGER, Entity, Property, Record, RecordType,
+from linkahead import (INTEGER, Entity, Property, Record, RecordType,
configure_connection)
-from caosdb.connection.mockup import MockUpServerConnection
+from linkahead.connection.mockup import MockUpServerConnection
UNITTESTDIR = os.path.dirname(os.path.abspath(__file__))
diff --git a/unittests/test_error_handling.py b/unittests/test_error_handling.py
index 7f974e7d..590755b9 100644
--- a/unittests/test_error_handling.py
+++ b/unittests/test_error_handling.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Indiscale GmbH <info@indiscale.com>
# Copyright (C) 2020 Florian Spreckelsen <f.spreckelsen@indiscale.com>
@@ -26,9 +26,9 @@ be TransactionErrors at first which may have one or more level of
children.
"""
-import caosdb as db
-from caosdb.common.models import raise_errors
-from caosdb.exceptions import (AuthorizationError,
+import linkahead as db
+from linkahead.common.models import raise_errors
+from linkahead.exceptions import (AuthorizationError,
EntityDoesNotExistError, EntityError,
EntityHasNoDatatypeError,
TransactionError, UniqueNamesError,
diff --git a/unittests/test_file.py b/unittests/test_file.py
index 3c80af7f..dd974cb1 100644
--- a/unittests/test_file.py
+++ b/unittests/test_file.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -22,8 +22,8 @@
# ** end header
#
"""Tests for the File class."""
-from caosdb import File, Record, configure_connection
-from caosdb.connection.mockup import MockUpServerConnection
+from linkahead import File, Record, configure_connection
+from linkahead.connection.mockup import MockUpServerConnection
# pylint: disable=missing-docstring
from nose.tools import assert_equal as eq
from nose.tools import assert_is_not_none as there
diff --git a/unittests/test_high_level_api.py b/unittests/test_high_level_api.py
index a9e55c9c..69bb9879 100644
--- a/unittests/test_high_level_api.py
+++ b/unittests/test_high_level_api.py
@@ -1,4 +1,4 @@
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -23,19 +23,19 @@
# A. Schlemmer, 02/2022
-import caosdb as db
-from caosdb.high_level_api import (convert_to_entity, convert_to_python_object,
+import linkahead as db
+from linkahead.high_level_api import (convert_to_entity, convert_to_python_object,
new_high_level_entity)
-from caosdb.high_level_api import (CaosDBPythonUnresolvedParent,
+from linkahead.high_level_api import (CaosDBPythonUnresolvedParent,
CaosDBPythonUnresolvedReference,
CaosDBPythonRecord, CaosDBPythonFile,
high_level_type_for_standard_type,
standard_type_for_high_level_type,
high_level_type_for_role,
CaosDBPythonEntity)
-from caosdb.apiutils import compare_entities
+from linkahead.apiutils import compare_entities
-from caosdb.common.datatype import (is_list_datatype,
+from linkahead.common.datatype import (is_list_datatype,
get_list_datatype,
is_reference)
diff --git a/unittests/test_issues.py b/unittests/test_issues.py
index 2c45a6d7..158e5617 100644
--- a/unittests/test_issues.py
+++ b/unittests/test_issues.py
@@ -1,4 +1,4 @@
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (c) 2022 IndiScale GmbH
# Copyright (c) 2022 Daniel Hornung (d.hornung@indiscale.com)
@@ -22,7 +22,7 @@
import os
import lxml
-import caosdb as db
+import linkahead as db
from pytest import raises
diff --git a/unittests/test_message.py b/unittests/test_message.py
index 5e100305..7c18095b 100644
--- a/unittests/test_message.py
+++ b/unittests/test_message.py
@@ -1,7 +1,7 @@
# encoding: utf-8
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -23,13 +23,13 @@
#
# ** end header
#
-import caosdb as db
+import linkahead as db
from copy import deepcopy
def test_messages_dict_behavior():
- from caosdb.common.models import Message
- from caosdb.common.models import _Messages
+ from linkahead.common.models import Message
+ from linkahead.common.models import _Messages
msgs = _Messages()
diff --git a/unittests/test_plantuml.py b/unittests/test_plantuml.py
index a507c36b..4605ebcb 100644
--- a/unittests/test_plantuml.py
+++ b/unittests/test_plantuml.py
@@ -2,7 +2,7 @@
# encoding: utf-8
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2022 Indiscale GmbH <info@indiscale.com>
# Copyright (C) 2022 Henrik tom Wörden <h.tomwoerden@indiscale.com>
@@ -29,9 +29,9 @@ test plantuml utility
import tempfile
import pytest
-import caosdb as db
+import linkahead as db
import shutil
-from caosdb.utils.plantuml import to_graphics
+from linkahead.utils.plantuml import to_graphics
@pytest.fixture
diff --git a/unittests/test_property.py b/unittests/test_property.py
index 7c756117..6e92af09 100644
--- a/unittests/test_property.py
+++ b/unittests/test_property.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -26,8 +26,8 @@
"""Tests for the Property class."""
import os
-import caosdb as db
-from caosdb import Entity, Property, Record
+import linkahead as db
+from linkahead import Entity, Property, Record
# pylint: disable=missing-docstring
from lxml import etree
diff --git a/unittests/test_query.py b/unittests/test_query.py
index 12622ea4..2c13f4b6 100644
--- a/unittests/test_query.py
+++ b/unittests/test_query.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2021 Indiscale GmbH <info@indiscale.com>
# Copyright (C) 2021 Timm Fitschen <f.fitschen@indiscale.com>
@@ -22,7 +22,7 @@
# ** end header
#
from lxml import etree
-import caosdb as db
+import linkahead as db
def test_query_parsing():
diff --git a/unittests/test_record.py b/unittests/test_record.py
index c08a3eb1..92c0f84a 100644
--- a/unittests/test_record.py
+++ b/unittests/test_record.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -26,7 +26,7 @@
#
"""Tests for the Record class."""
# pylint: disable=missing-docstring
-from caosdb import Entity, Record, RecordType
+from linkahead import Entity, Record, RecordType
def test_is_entity():
diff --git a/unittests/test_record_type.py b/unittests/test_record_type.py
index f31c56de..594f9c64 100644
--- a/unittests/test_record_type.py
+++ b/unittests/test_record_type.py
@@ -1,7 +1,7 @@
# -*- encoding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -22,8 +22,8 @@
# ** end header
#
"""Tests for the RecordType class."""
-from caosdb import Entity, RecordType, configure_connection
-from caosdb.connection.mockup import MockUpServerConnection
+from linkahead import Entity, RecordType, configure_connection
+from linkahead.connection.mockup import MockUpServerConnection
# pylint: disable=missing-docstring
from nose.tools import assert_equal as eq
from nose.tools import assert_is_not_none as there
diff --git a/unittests/test_schema.py b/unittests/test_schema.py
index fc3f63a4..feb84e3b 100644
--- a/unittests/test_schema.py
+++ b/unittests/test_schema.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2022 Indiscale GmbH <info@indiscale.com>
# Copyright (C) 2021 Alexander Schlemmer
@@ -27,7 +27,7 @@ from jsonschema.exceptions import ValidationError
from pytest import raises
from glob import glob
import os
-from caosdb.configuration import config_to_yaml, validate_yaml_schema
+from linkahead.configuration import config_to_yaml, validate_yaml_schema
from configparser import ConfigParser
diff --git a/unittests/test_server_side_scripting.py b/unittests/test_server_side_scripting.py
index b699c448..7749af98 100644
--- a/unittests/test_server_side_scripting.py
+++ b/unittests/test_server_side_scripting.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
@@ -25,9 +25,9 @@
import json
from urllib.parse import parse_qs
from unittest.mock import Mock
-from caosdb.utils import server_side_scripting as sss
-from caosdb.connection.mockup import MockUpServerConnection, MockUpResponse
-from caosdb import configure_connection
+from linkahead.utils import server_side_scripting as sss
+from linkahead.connection.mockup import MockUpServerConnection, MockUpResponse
+from linkahead import configure_connection
_REMOVE_FILES_AFTERWARDS = []
diff --git a/unittests/test_state.py b/unittests/test_state.py
index 202c7a02..d2bb08b7 100644
--- a/unittests/test_state.py
+++ b/unittests/test_state.py
@@ -1,7 +1,7 @@
import pytest
-import caosdb as db
-from caosdb import State, Transition
-from caosdb.common.models import parse_xml, ACL
+import linkahead as db
+from linkahead import State, Transition
+from linkahead.common.models import parse_xml, ACL
from lxml import etree
diff --git a/unittests/test_utils.py b/unittests/test_utils.py
index 42d18ba0..cd91de59 100644
--- a/unittests/test_utils.py
+++ b/unittests/test_utils.py
@@ -1,7 +1,7 @@
# coding: utf-8
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2018 Research Group Biomedical Physics,
# Max-Planck-Institute for Dynamics and Self-Organization Göttingen
@@ -24,7 +24,7 @@
"""Tests for caosdb.common.utils."""
from __future__ import unicode_literals
from lxml.etree import Element
-from caosdb.common.utils import xml2str
+from linkahead.common.utils import xml2str
def test_xml2str():
diff --git a/unittests/test_versioning.py b/unittests/test_versioning.py
index 5047069c..2862d902 100644
--- a/unittests/test_versioning.py
+++ b/unittests/test_versioning.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# ** header v3.0
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2020 Timm Fitschen <t.fitschen@indiscale.com>
# Copyright (C) 2020 IndiScale GmbH <info@indiscale.com>
@@ -23,9 +23,9 @@
#
from __future__ import absolute_import
-from caosdb import Record
-from caosdb.common.utils import xml2str
-from caosdb.common.versioning import Version
+from linkahead import Record
+from linkahead.common.utils import xml2str
+from linkahead.common.versioning import Version
from .test_property import testrecord
from lxml import etree
diff --git a/unittests/test_yamlapi.py b/unittests/test_yamlapi.py
index cdb1e049..0b0aca47 100644
--- a/unittests/test_yamlapi.py
+++ b/unittests/test_yamlapi.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
#
-# This file is a part of the CaosDB Project.
+# This file is a part of the LinkAhead Project.
#
# Copyright (C) 2021 IndiScale GmbH <info@indiscale.com>
# Copyright (C) 2021 Alexander Kreft <akreft@trineo.org>
@@ -22,7 +22,7 @@
import os
import warnings
import tempfile
-from caosdb.yamlapi import (append_sublist, kv_to_xml,
+from linkahead.yamlapi import (append_sublist, kv_to_xml,
dict_to_xml, yaml_to_xml,
process, yaml_file_to_xml)
--
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