diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index b5bc53fed1b069f3a6f665a188aa8bdcd7252570..30a8cd8fe4c08fd3fe0f3f98aaa56b83cb623086 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -152,11 +152,11 @@ inttest:
- CAOSDB_TAG=$CAOSDB_TAG docker-compose up -d
# Store versions of CaosDB parts
- - docker exec -u 0 -t docker_caosdb-server_1 cat /opt/caosdb/git/caosdb_pylib_commit > hash_pylib
- - docker exec -u 0 -t docker_caosdb-server_1 cat /opt/caosdb/git/caosdb_webui_commit > hash_webui
- - docker exec -u 0 -t docker_caosdb-server_1 cat /opt/caosdb/git/caosdb_server_commit > hash_server
- - docker exec -u 0 -t docker_caosdb-server_1 cat /opt/caosdb/git/caosdb_mysqlbackend_commit > hash_mysql
- - docker exec -u 0 -t docker_caosdb-server_1 cat /opt/caosdb/git/caosdb_proto_commit > hash_proto
+ - docker exec -u 0 -t docker-caosdb-server-1 cat /opt/caosdb/git/caosdb_pylib_commit > hash_pylib
+ - docker exec -u 0 -t docker-caosdb-server-1 cat /opt/caosdb/git/caosdb_webui_commit > hash_webui
+ - docker exec -u 0 -t docker-caosdb-server-1 cat /opt/caosdb/git/caosdb_server_commit > hash_server
+ - docker exec -u 0 -t docker-caosdb-server-1 cat /opt/caosdb/git/caosdb_mysqlbackend_commit > hash_mysql
+ - docker exec -u 0 -t docker-caosdb-server-1 cat /opt/caosdb/git/caosdb_proto_commit > hash_proto
- cat hash_server
- cat hash_proto
- cat hash_mysql
@@ -167,8 +167,8 @@ inttest:
- /bin/sh ./run.sh
# Save logs
- - docker logs docker_caosdb-server_1 &> ../caosdb_log.txt
- - docker logs docker_sqldb_1 &> ../mariadb_log.txt
+ - docker logs docker-caosdb-server-1 &> ../caosdb_log.txt
+ - docker logs docker-sqldb-1 &> ../mariadb_log.txt
- cd ..
# Stop the server
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3db61909ec48b24231f011d1a2a4790febb793dc..f7adefabb93febaf364133d0647fde5b0e535d0a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,7 +5,22 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
-## [Unreleased]
+## [Unreleased] ##
+
+### Added ###
+
+### Changed ###
+
+### Deprecated ###
+
+### Removed ###
+
+### Fixed ###
+
+### Security ###
+
+## [0.1.0] - 2022-10-11
+(Florian Spreckelsen)
### Added
@@ -13,24 +28,23 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
* Added new converters for tables: CSVTableConverter and XLSXTableConverter
* Possibility to authorize updates as in the old crawler
* Allow authorization of inserts
+* Allow splitting cfoods into multiple yaml documents
+* Implemented macros
* Converters can now filter the list of children
* You can now crawl data with name conflicts: `synchronize(unique_names=False)`
### Changed
-* Renamed module from `newcrawler` to `caoscrawler`
-
-### Deprecated
-
-### Removed
+* MAINT: Renamed module from `newcrawler` to `caoscrawler`
+* MAINT: Removed global converters from `crawl.py`
### Fixed
* FIX: #12
+* FIX: #14
* FIX: Variables are now also replaced when the value is given as a list.
* FIX: #35 Parent cannot be set from value
* [#6](https://gitlab.com/caosdb/caosdb-crawler/-/issues/6): Fixed many type
hints to be compatible to python 3.8
-
-
-### Security
+* [#9](https://gitlab.com/caosdb/caosdb-crawler/-/issues/9): Sclaras of types
+ different than string can now be given in cfood definitions
diff --git a/README.md b/README.md
index 8576e5c969556005fdeb346ef2cdfadf1b7fc266..b97fc8775ba334c03c5c0a42238e9f396301e6b3 100644
--- a/README.md
+++ b/README.md
@@ -38,9 +38,9 @@ The original authors of this package are:
# License
-Copyright (C) 2021 Research Group Biomedical Physics, Max Planck Institute for
+Copyright (C) 2021-2022 Research Group Biomedical Physics, Max Planck Institute for
Dynamics and Self-Organization Göttingen.
-Copyright (C) 2021 IndiScale GmbH
+Copyright (C) 2021-2022 IndiScale GmbH
All files in this repository are licensed under a [GNU Affero General Public
License](LICENCE) (version 3 or later).
diff --git a/RELEASE_GUIDELINES.md b/RELEASE_GUIDELINES.md
new file mode 100644
index 0000000000000000000000000000000000000000..d6bc2c9ae41b8032a5567f786eb060d7b67d2cc5
--- /dev/null
+++ b/RELEASE_GUIDELINES.md
@@ -0,0 +1,47 @@
+# Release Guidelines for the CaosDB Python Client Library
+
+This document specifies release guidelines in addition to the general release
+guidelines of the CaosDB Project
+([RELEASE_GUIDELINES.md](https://gitlab.com/caosdb/caosdb/blob/dev/RELEASE_GUIDELINES.md))
+
+## General Prerequisites
+
+* All tests are passing.
+* FEATURES.md is up-to-date and a public API is being declared in that document.
+* CHANGELOG.md is up-to-date.
+* dependencies in `setup.cfg` are up-to-date.
+
+## Steps
+
+1. Create a release branch from the dev branch. This prevents further changes
+ to the code base and a never ending release process. Naming: `release-<VERSION>`
+
+2. Update CHANGELOG.md
+
+3. Check all general prerequisites.
+
+4. Update the version:
+ - `version` variables in `src/doc/conf.py`
+ - Version in [setup.cfg](./setup.cfg): Check the `MAJOR`, `MINOR`, `MICRO`, `PRE` variables and set
+ `ISRELEASED` to `True`. Use the possibility to issue pre-release versions for testing.
+
+5. Merge the release branch into the main branch.
+
+6. Tag the latest commit of the main branch with `v<VERSION>`.
+
+7. Delete the release branch.
+
+8. Remove possibly existing `./dist` directory with old release.
+
+9. Publish the release by executing `./release.sh` with uploads the caosdb
+ module to the Python Package Index [pypi.org](https://pypi.org).
+
+10. Merge the main branch back into the dev branch.
+
+11. After the merge of main to dev, start a new development version by
+ increasing at least the micro version in [setup.cfg](./setup.cfg) and
+ preparing CHANGELOG.md.
+
+12. Create releases on gitlab.com and gitlab.indiscale.com that contain (at
+ least) the most recent section of the CHANGELOG as the description and link
+ to the PyPi package.
diff --git a/integrationtests/test-profile/custom/other/restore/caosdb.2022-01-20T08:27:49.631552786+00:00.dump.sql b/integrationtests/test-profile/custom/other/restore/caosdb.2022-01-20T08:27:49.631552786+00:00.dump.sql
deleted file mode 100644
index c527a0040a469b5f48cbd50c786fe9ff24d545d5..0000000000000000000000000000000000000000
--- a/integrationtests/test-profile/custom/other/restore/caosdb.2022-01-20T08:27:49.631552786+00:00.dump.sql
+++ /dev/null
@@ -1,5716 +0,0 @@
--- MariaDB dump 10.19 Distrib 10.5.12-MariaDB, for debian-linux-gnu (x86_64)
---
--- Host: sqldb Database: caosdb
--- ------------------------------------------------------
--- Server version 10.5.11-MariaDB-1:10.5.11+maria~focal
-
-/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
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-/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
-/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
-/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
-
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--- Table structure for table `archive_collection_type`
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-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `constructDateTimeWhereClauseForColumn`(seconds_col VARCHAR(255), nanos_col VARCHAR(255), vDateTimeSecLow VARCHAR(255), vDateTimeNSLow VARCHAR(255), vDateTimeSecUpp VARCHAR(255), vDateTimeNSUpp VARCHAR(255), operator CHAR(4)) RETURNS varchar(20000) CHARSET utf8 COLLATE utf8_unicode_ci
- DETERMINISTIC
-BEGIN
-
- DECLARE isInterval BOOLEAN DEFAULT vDateTimeSecUpp IS NOT NULL or vDateTimeNSUpp IS NOT NULL;
- DECLARE operator_prefix CHAR(1) DEFAULT LEFT(operator,1);
-
- IF isInterval THEN
- IF operator = '=' THEN
- RETURN " 0=1";
- ELSEIF operator = '!=' THEN
- RETURN " 0=1";
- ELSEIF operator = '>' or operator = '<=' THEN
- RETURN CONCAT(" ", seconds_col, operator_prefix, vDateTimeSecUpp);
- ELSEIF operator = '<' or operator = '>=' THEN
- RETURN CONCAT(" ", seconds_col, operator_prefix, vDateTimeSecLow);
- ELSEIF operator = "(" THEN
- RETURN CONCAT(" ", seconds_col, ">=", vDateTimeSecLow, " AND ",seconds_col, "<", vDateTimeSecUpp);
- ELSEIF operator = "!(" THEN
- RETURN CONCAT(" ", seconds_col, "<", vDateTimeSecLow, " OR ", seconds_col, ">=", vDateTimeSecUpp);
- END IF;
- ELSE
- IF operator = '=' THEN
- RETURN CONCAT(" ",
- seconds_col,
- "=", vDateTimeSecLow, IF(vDateTimeNSLow IS NULL, CONCAT(' AND ', nanos_col, ' IS NULL'), CONCAT(' AND ',
- nanos_col,
- '=', vDateTimeNSLow)));
- ELSEIF operator = '!=' THEN
- RETURN CONCAT(" ",
- seconds_col,
- "!=", vDateTimeSecLow, IF(vDateTimeNSLow IS NULL, '', CONCAT(' OR ',
- nanos_col,
- '!=', vDateTimeNSLow)));
- ELSEIF operator = '>' or operator = '<' THEN
- RETURN CONCAT(" ",
- seconds_col, operator, vDateTimeSecLow, IF(vDateTimeNSLow IS NULL, '', CONCAT(' OR (',seconds_col,'=', vDateTimeSecLow, ' AND ',nanos_col, operator, vDateTimeNSLow, ')')));
- ELSEIF operator = '>=' or operator = '<=' THEN
- RETURN CONCAT(
- " ", seconds_col, operator, vDateTimeSecLow,
- IF(vDateTimeNSLow IS NULL,
- '',
- CONCAT(
- ' AND (', seconds_col, operator_prefix, vDateTimeSecLow,
- ' OR ', nanos_col, operator, vDateTimeNSLow,
- ' OR ', nanos_col, ' IS NULL)')));
- ELSEIF operator = "(" THEN
- RETURN IF(vDateTimeNSLow IS NULL,CONCAT(" ",seconds_col,"=", vDateTimeSecLow),CONCAT(" ",seconds_col,"=",vDateTimeSecLow," AND ",nanos_col,"=",vDateTimeNSLow));
- ELSEIF operator = "!(" THEN
- RETURN IF(vDateTimeNSLow IS NULL,CONCAT(" ",seconds_col,"!=",vDateTimeSecLow, ""),CONCAT(" ",seconds_col,"!=",vDateTimeSecLow," OR ",nanos_col, " IS NULL OR ", nanos_col, "!=",vDateTimeNSLow));
- END IF;
- END IF;
- return ' 0=1';
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `convert_unit` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `convert_unit`(unit_sig BIGINT, value DECIMAL(65,30)) RETURNS decimal(65,30)
- DETERMINISTIC
-BEGIN
- DECLARE ret DECIMAL(65,30) DEFAULT value;
-
- SELECT (((value+a)*b_dividend)/b_divisor+c) INTO ret FROM units_lin_con WHERE signature_from=unit_sig;
- RETURN ret;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `getAggValueWhereClause` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `getAggValueWhereClause`(entities VARCHAR(255), properties VARCHAR(255)) RETURNS varchar(20000) CHARSET utf8 COLLATE utf8_unicode_ci
- DETERMINISTIC
-BEGIN
- RETURN CONCAT(" EXISTS (SELECT 1 FROM `", entities, "` AS ent WHERE ent.id = subdata.entity_id LIMIT 1)", IF(properties IS NOT NULL AND properties != '', CONCAT(" AND EXISTS (SELECT 1 FROM `", properties, "` as props WHERE props.id = subdata.property_id LIMIT 1)"),''));
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `getDateTimeWhereClause` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `getDateTimeWhereClause`(vDateTime VARCHAR(255), operator CHAR(4)) RETURNS varchar(20000) CHARSET utf8 COLLATE utf8_unicode_ci
- DETERMINISTIC
-BEGIN
- DECLARE sep_loc INTEGER DEFAULT LOCATE('--',vDateTime);
- DECLARE vDateTimeLow VARCHAR(255) DEFAULT IF(sep_loc != 0, SUBSTRING_INDEX(vDateTime, '--',1), vDateTime);
- DECLARE vDateTimeUpp VARCHAR(255) DEFAULT IF(sep_loc != 0, SUBSTRING_INDEX(vDateTime, '--',-1), NULL);
-
- DECLARE vDateTimeSecLow VARCHAR(255) DEFAULT SUBSTRING_INDEX(vDateTimeLow, 'UTC', 1);
- DECLARE vDateTimeNSLow VARCHAR(255) DEFAULT IF(SUBSTRING_INDEX(vDateTimeLow, 'UTC', -1)='',NULL,SUBSTRING_INDEX(vDateTimeLow, 'UTC', -1));
-
- DECLARE vDateTimeSecUpp VARCHAR(255) DEFAULT IF(sep_loc != 0, SUBSTRING_INDEX(vDateTimeUpp, 'UTC', 1), NULL);
- DECLARE vDateTimeNSUpp VARCHAR(255) DEFAULT IF(sep_loc != 0 AND SUBSTRING_INDEX(vDateTimeUpp, 'UTC', -1)!='',SUBSTRING_INDEX(vDateTimeUpp, 'UTC', -1),NULL);
-
-
- RETURN constructDateTimeWhereClauseForColumn("subdata.value", "subdata.value_ns", vDateTimeSecLow, vDateTimeNSLow, vDateTimeSecUpp, vDateTimeNSUpp, operator);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `getDateWhereClause` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `getDateWhereClause`(vDateTimeDotNotation VARCHAR(255), operator CHAR(4)) RETURNS varchar(20000) CHARSET utf8 COLLATE utf8_unicode_ci
- DETERMINISTIC
-BEGIN
- DECLARE isInterval INTEGER DEFAULT LOCATE('--',vDateTimeDotNotation);
-
- DECLARE vILB VARCHAR(255) DEFAULT IF(isInterval != 0, SUBSTRING_INDEX(vDateTimeDotNotation, '--', 1), vDateTimeDotNotation);
-
- DECLARE vEUB VARCHAR(255) DEFAULT IF(isInterval != 0, SUBSTRING_INDEX(vDateTimeDotNotation, '--', -1), NULL);
- DECLARE vILB_Date INTEGER DEFAULT SUBSTRING_INDEX(vILB, '.', 1);
- DECLARE vEUB_Date INTEGER DEFAULT SUBSTRING_INDEX(vEUB, '.', 1);
-
- DECLARE hasTime INTEGER DEFAULT LOCATE('.NULL.NULL',vILB);
-
- DECLARE dom INTEGER DEFAULT vILB_Date % 100;
-
- DECLARE mon INTEGER DEFAULT ((vILB_Date % 10000) - dom) / 100;
-
- DECLARE yea INTEGER DEFAULT (vILB_Date - (vILB_Date % 10000)) / 10000;
-
- IF operator = '=' and hasTime != 0 THEN
- RETURN CONCAT(" subdata.value=", vILB_Date);
- ELSEIF operator = "!=" and hasTime != 0 THEN
- IF mon != 0 and dom != 0 THEN
- RETURN CONCAT(" subdata.value!=", vILB_Date, " and subdata.value%100!=0");
- ELSEIF mon != 0 THEN
- RETURN CONCAT(" subdata.value!=", vILB_Date, " and subdata.value%100=0 and subdata.value%10000!=0");
- ELSE
- RETURN CONCAT(" subdata.value!=", vILB_Date, " and subdata.value%10000=0");
- END IF;
- ELSEIF operator = "(" and hasTime != 0 THEN
- IF mon != 0 and dom != 0 THEN
- RETURN CONCAT(" subdata.value=", vILB_Date);
- ELSEIF mon != 0 THEN
- RETURN CONCAT(" subdata.value=",vILB_Date," OR (subdata.value>", vILB_Date, " and subdata.value<", vEUB_Date, " and subdata.value%10000!=0)");
- ELSE
- RETURN CONCAT(" subdata.value=",vILB_Date," OR (subdata.value>", vILB_Date, " and subdata.value<", vEUB_Date,")");
- END IF;
- ELSEIF operator = "!(" THEN
- IF hasTime = 0 THEN
- RETURN " 0=0";
- END IF;
- IF mon != 0 and dom != 0 THEN
- RETURN CONCAT(" subdata.value!=",vILB_Date);
- ELSEIF mon != 0 THEN
- RETURN CONCAT(" (subdata.value!=",vILB_Date, " AND subdata.value%100=0) OR ((subdata.value<", vILB_Date, " or subdata.value>", vEUB_Date, ") and subdata.value%100!=0)");
- ELSE
- RETURN CONCAT(" (subdata.value!=",vILB_Date, " AND subdata.value%10000=0) OR ((subdata.value<", vILB_Date, " or subdata.value>=", vEUB_Date, ") and subdata.value%10000!=0)");
- END IF;
- ELSEIF operator = "<" THEN
- IF mon != 0 and dom != 0 THEN
- RETURN CONCAT(" subdata.value<", vILB_Date, " and (subdata.value%100!=0 or (subdata.value<", yea*10000+mon*100, " and subdata.value%10000!=0) or (subdata.value<", yea*10000, " and subdata.value%10000=0))");
- ELSEIF mon != 0 THEN
- RETURN CONCAT(" subdata.value<", vILB_Date, " and (subdata.value%10000!=0 or (subdata.value<", yea*10000, "))");
- ELSE
- RETURN CONCAT(" subdata.value<", vILB_Date);
- END IF;
- ELSEIF operator = ">" THEN
- IF mon != 0 and dom != 0 THEN
- RETURN CONCAT(" subdata.value>", vILB_Date);
- ELSEIF mon != 0 THEN
- RETURN CONCAT(" subdata.value>=",vEUB_Date);
- ELSE
- RETURN CONCAT(" subdata.value>=",vEUB_Date);
- END IF;
- ELSEIF operator = "<=" THEN
- IF mon != 0 and dom != 0 THEN
-
- RETURN CONCAT(" subdata.value<=", vILB_Date,
- " or (subdata.value<=", yea*10000 + mon*100, " and subdata.value%100=0)");
- ELSEIF mon != 0 THEN
-
- RETURN CONCAT(" subdata.value<", vEUB_Date);
- ELSE
-
- RETURN CONCAT(" subdata.value<", vEUB_Date);
- END IF;
- ELSEIF operator = ">=" THEN
- IF mon != 0 and dom != 0 THEN
-
- RETURN CONCAT(" subdata.value>=", vILB_Date,
- " or (subdata.value>=", yea*10000 + mon*100, " and subdata.value%100=0)",
- " or (subdata.value>=", yea*10000, " and subdata.value%10000=0)");
- ELSEIF mon != 0 THEN
-
- RETURN CONCAT(" subdata.value>=", yea*10000 + mon*100,
- " or (subdata.value>=", yea*10000, " and subdata.value%10000=0)");
- ELSE
-
- RETURN CONCAT(" subdata.value>=", yea*10000);
- END IF;
- END IF;
-
- return ' 0=1';
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `getDoubleWhereClause` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `getDoubleWhereClause`(value DOUBLE, unit_sig BIGINT, valueStdUnit DECIMAL(65,30), stdUnit_sig BIGINT, o CHAR(4)) RETURNS varchar(20000) CHARSET utf8 COLLATE utf8_unicode_ci
- DETERMINISTIC
-BEGIN
- RETURN IF(unit_sig IS NULL AND value IS NOT NULL,
- CONCAT('subdata.value ', o, ' \'', value, '\''),
- CONCAT(
- IF(value IS NULL, '',
- CONCAT('(subdata.unit_sig=', unit_sig, ' AND subdata.value ', o, ' \'', value, '\') OR ')),
- IF(unit_sig = stdUnit_sig,'',CONCAT('(subdata.unit_sig=', stdUnit_sig,' AND subdata.value ', o, ' \'', valueStdUnit, '\') OR ')),'(standard_unit(subdata.unit_sig)=', stdUnit_sig,' AND convert_unit(subdata.unit_sig,subdata.value) ', o, ' ', valueStdUnit, ')'));
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `get_head_relative` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `get_head_relative`(EntityID INT UNSIGNED,
- Offset INT UNSIGNED) RETURNS varbinary(255)
- READS SQL DATA
-BEGIN
-
-
-
-
- RETURN (
- SELECT e.version
- FROM entity_version AS e
- WHERE e.entity_id = EntityID
- ORDER BY e._iversion DESC
- LIMIT 1 OFFSET Offset
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `get_head_version` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `get_head_version`(EntityID INT UNSIGNED) RETURNS varbinary(255)
- READS SQL DATA
-BEGIN
- RETURN get_head_relative(EntityID, 0);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `get_iversion` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `get_iversion`(EntityID INT UNSIGNED,
- Version VARBINARY(255)) RETURNS int(10) unsigned
- READS SQL DATA
-BEGIN
- RETURN (
- SELECT e._iversion
- FROM entity_version AS e
- WHERE e.entity_id = EntityID
- AND e.version = Version
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `get_primary_parent_version` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `get_primary_parent_version`(EntityID INT UNSIGNED,
- Version VARBINARY(255)) RETURNS varbinary(255)
- READS SQL DATA
-BEGIN
- RETURN (
- SELECT p.version
- FROM entity_version AS e INNER JOIN entity_version AS p
- ON (e._ipparent = p._iversion
- AND e.entity_id = p.entity_id)
- WHERE e.entity_id = EntityID
- AND e.version = Version
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `get_version_timestamp` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `get_version_timestamp`(EntityID INT UNSIGNED,
- Version VARBINARY(255)) RETURNS varchar(255) CHARSET utf8 COLLATE utf8_unicode_ci
- READS SQL DATA
-BEGIN
- RETURN (
- SELECT concat(t.seconds, '.', t.nanos)
- FROM entity_version AS e INNER JOIN transactions AS t
- ON ( e.srid = t.srid )
- WHERE e.entity_id = EntityID
- AND e.version = Version
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `is_feature_config` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `is_feature_config`(_Key VARCHAR(255),
- Expected VARCHAR(255)) RETURNS tinyint(1)
- READS SQL DATA
-BEGIN
- RETURN (
- SELECT f._value = Expected FROM feature_config as f WHERE f._key = _Key
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `makeStmt` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `makeStmt`(sourceSet VARCHAR(255), targetSet VARCHAR(255), data VARCHAR(20000),
- properties VARCHAR(20000), versioned BOOLEAN) RETURNS varchar(20000) CHARSET utf8 COLLATE utf8_unicode_ci
- NO SQL
-BEGIN
- IF sourceSet = "entities" AND versioned THEN
- RETURN CONCAT('INSERT IGNORE INTO `',
- targetSet,
- '` (id, _iversion) SELECT entity_id, _iversion FROM ',
- data,
- IF(properties IS NULL, '',
- CONCAT(' AS data JOIN `', properties, '` AS prop ON (data.property_id = prop.id) WHERE ',
- 'data.entity_id = prop.id2 OR prop.id2 = 0')));
- END IF;
- RETURN CONCAT(
- IF(targetSet IS NULL,
- CONCAT('DELETE FROM `',sourceSet,'` WHERE NOT EXISTS (SELECT 1 FROM '),
- CONCAT('INSERT IGNORE INTO `',targetSet,'` (id) SELECT id FROM `',sourceSet,'` ',
- 'WHERE EXISTS (SELECT 1 FROM ')),
- IF(properties IS NULL,
- CONCAT(data,' as data WHERE '),
- CONCAT('`',properties,'` as prop JOIN ',data,' as data ON (data.property_id=prop.id) WHERE ',
- '(data.entity_id=prop.id2 OR prop.id2=0) AND ')),
- 'data.entity_id=`', sourceSet, '`.`id` LIMIT 1)'
- );
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `ms` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `ms`(ps bigint(20) unsigned ) RETURNS double
-return TRUNCATE(ps/1000000000,3) ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `standard_unit` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `standard_unit`(unit_sig BIGINT) RETURNS bigint(20)
- DETERMINISTIC
-BEGIN
- DECLARE ret BIGINT DEFAULT unit_sig;
-
- SELECT signature_to INTO ret FROM units_lin_con WHERE signature_from=unit_sig;
- RETURN ret;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `_get_head_iversion` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `_get_head_iversion`(EntityID INT UNSIGNED) RETURNS int(10) unsigned
- READS SQL DATA
-BEGIN
-
-
-
-
- RETURN (
- SELECT e._iversion
- FROM entity_version AS e
- WHERE e.entity_id = EntityID
- ORDER BY e._iversion DESC
- LIMIT 1
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP FUNCTION IF EXISTS `_get_version` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` FUNCTION `_get_version`(EntityID INT UNSIGNED,
- IVersion INT UNSIGNED) RETURNS varbinary(255)
- READS SQL DATA
-BEGIN
- RETURN (
- SELECT version FROM entity_version
- WHERE entity_id = EntityID
- AND _iversion = IVersion
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `applyBackReference` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `applyBackReference`(in sourceSet VARCHAR(255), targetSet VARCHAR(255),
- in propertiesTable VARCHAR(255), in entitiesTable VARCHAR(255), in subQuery BOOLEAN,
- in versioned BOOLEAN)
-BEGIN
- DECLARE newTableName VARCHAR(255) DEFAULT NULL;
-
-
- IF subQuery IS TRUE THEN
- call registerTempTableName(newTableName);
-
- SET @createBackRefSubQueryTableStr = CONCAT('CREATE TEMPORARY TABLE `',newTableName,'` ( entity_id INT UNSIGNED NOT NULL, id INT UNSIGNED NOT NULL, CONSTRAINT `',newTableName,'PK` PRIMARY KEY (id, entity_id))');
-
- PREPARE createBackRefSubQueryTable FROM @createBackRefSubQueryTableStr;
- EXECUTE createBackRefSubQueryTable;
- DEALLOCATE PREPARE createBackRefSubQueryTable;
-
- SET @backRefSubResultSetStmtStr = CONCAT('INSERT IGNORE INTO `',
- newTableName,
- '` (id,entity_id) SELECT entity_id AS id, value AS entity_id FROM `reference_data` AS data ',
- 'WHERE EXISTS (SELECT 1 FROM `',
- sourceSet,
- '` AS source WHERE source.id=data.value LIMIT 1)',
- IF(propertiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- propertiesTable,
- '` AS p WHERE p.id=data.property_id LIMIT 1)')),
- IF(entitiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- entitiesTable,
- '` AS e WHERE e.id=data.entity_id LIMIT 1)'))
- );
-
- PREPARE backRefSubResultSetStmt FROM @backRefSubResultSetStmtStr;
- EXECUTE backRefSubResultSetStmt;
- DEALLOCATE PREPARE backRefSubResultSetStmt;
-
- SELECT newTableName as list;
- ELSE
- IF versioned THEN
- IF sourceSet = "entities" THEN
-
- SET @stmtBackRefStr = CONCAT('INSERT IGNORE INTO `',
- targetSet,
- '` (id, _iversion) SELECT source.id, _get_head_iversion(source.id)',
-
- ' FROM entities AS source WHERE EXISTS (',
- 'SELECT 1 FROM `reference_data` AS data WHERE data.value=source.id AND (',
- 'data.value_iversion IS NULL OR data.value_iversion=_get_head_iversion(source.id))',
- IF(entitiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- entitiesTable,
- '` AS e WHERE e.id=data.entity_id LIMIT 1)')),
- IF(propertiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- propertiesTable,
- '` AS p WHERE p.id=data.property_id LIMIT 1)')),
- ') UNION ALL ',
-
- 'SELECT source.id, source._iversion FROM archive_entities AS source WHERE EXISTS (',
- 'SELECT 1 FROM `reference_data` AS data WHERE data.value=source.id AND ',
- '(data.value_iversion IS NULL OR data.value_iversion=source._iversion)',
- IF(entitiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- entitiesTable,
- '` AS e WHERE e.id=data.entity_id LIMIT 1)')),
- IF(propertiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- propertiesTable,
- '` AS p WHERE p.id=data.property_id LIMIT 1)')),
-
- ')');
- ELSEIF targetSet IS NULL OR sourceSet = targetSet THEN
- SET @stmtBackRefStr = CONCAT('DELETE FROM `',
- sourceSet,
- '` WHERE NOT EXISTS (SELECT 1 FROM `reference_data` AS data WHERE data.value=`',
- sourceSet,
- '`.`id` AND ( data.value_iversion IS NULL OR data.value_iversion=`',
- sourceSet,
- '`._iversion)',
- IF(entitiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- entitiesTable,
- '` AS e WHERE e.id=data.entity_id LIMIT 1)')),
- IF(propertiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- propertiesTable,
- '` AS p WHERE p.id=data.property_id LIMIT 1)')),
- ')');
- ELSE
- SET @stmtBackRefStr = CONCAT('INSERT IGNORE INTO `',
- targetSet,
- '` (id, _iversion) SELECT source.id, source._iversion FROM `',
- sourceSet,
- '` AS source WHERE EXISTS (',
- 'SELECT 1 FROM `reference_data` AS data WHERE data.value=source.id AND',
- ' (data.value_iversion IS NULL OR data.value_iversion=source._iversion)',
- IF(entitiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- entitiesTable,
- '` AS e WHERE e.id=data.entity_id LIMIT 1)')),
- IF(propertiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- propertiesTable,
- '` AS p WHERE p.id=data.property_id LIMIT 1)')),
-
- ')');
- END IF;
- ELSE
-
- IF targetSet IS NULL OR sourceSet = targetSet THEN
-
- SET @stmtBackRefStr = CONCAT('DELETE FROM `',
- sourceSet,
- '` WHERE NOT EXISTS (SELECT 1 FROM `reference_data` AS data WHERE data.value=`',
- sourceSet,
- '`.`id`',
- IF(entitiesTable IS NULL,
- '',
- CONCAT('
- AND EXISTS (SELECT 1 FROM `',
- entitiesTable,
- '` AS e WHERE e.id=data.entity_id LIMIT 1)')),
- IF(propertiesTable IS NULL,
- '',
- CONCAT('
- AND EXISTS (SELECT 1 FROM `',
- propertiesTable,
- '` AS p WHERE p.id=data.property_id LIMIT 1)')),
- ')');
- ELSE
-
- SET @stmtBackRefStr = CONCAT('INSERT IGNORE INTO `',
- targetSet,
- '` (id) SELECT id FROM `',
- sourceSet,
- '` AS source WHERE EXISTS (SELECT 1 FROM `reference_data` AS data WHERE data.value=source.id',
- IF(entitiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- entitiesTable,
- '` AS e WHERE e.id=data.entity_id LIMIT 1)')),
- IF(propertiesTable IS NULL,
- '',
- CONCAT(' AND EXISTS (SELECT 1 FROM `',
- propertiesTable,
- '` AS p WHERE p.id=data.property_id LIMIT 1)')),
- ')');
- END IF;
- END IF;
-
- PREPARE stmtBackRef FROM @stmtBackRefStr;
- EXECUTE stmtBackRef;
- DEALLOCATE PREPARE stmtBackRef;
- END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `applyIDFilter` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `applyIDFilter`(in sourceSet VARCHAR(255), in targetSet VARCHAR(255),
- in o CHAR(2), in vInt BIGINT, in agg CHAR(3), in versioned BOOLEAN)
-IDFILTER_LABEL: BEGIN
-DECLARE data VARCHAR(20000) DEFAULT NULL;
-DECLARE aggVal VARCHAR(255) DEFAULT NULL;
-
-
-IF agg IS NOT NULL THEN
- IF versioned THEN
-
- SELECT 1 FROM id_agg_with_versioning_not_implemented;
- END IF;
- SET @stmtIDAggValStr = CONCAT(
- "SELECT ",
- agg,
- "(id) INTO @sAggVal FROM `",
- sourceSet,
- "`");
- PREPARE stmtIDAggVal FROM @stmtIDAggValStr;
- EXECUTE stmtIDAggVal;
- DEALLOCATE PREPARE stmtIDAggVal;
- SET aggVal = @sAggVal;
-END IF;
-
-
-IF targetSet IS NULL OR targetSet = sourceSet THEN
- SET data = CONCAT(
- "DELETE FROM `",
- sourceSet,
- "` WHERE ",
- IF(o IS NULL OR vInt IS NULL,
- "1=1",
- CONCAT("NOT id",
- o,
- vInt)),
- IF(aggVal IS NULL,
- "",
- CONCAT(" AND id!=",
- aggVal)));
-ELSEIF versioned AND sourceSet = "entities" THEN
-
-
- SET data = CONCAT(
- "INSERT IGNORE INTO `",
- targetSet,
- '` (id, _iversion) SELECT id, _get_head_iversion(id) FROM `entities` WHERE ',
- IF(o IS NULL OR vInt IS NULL,
- "1=1",
- CONCAT("id",
- o,
- vInt)),
- IF(aggVal IS NULL,
- "",
- CONCAT(" AND id=",
- aggVal)),
- ' UNION SELECT id, _iversion FROM `archive_entities` WHERE ',
- IF(o IS NULL OR vInt IS NULL,
- "1=1",
- CONCAT("id",
- o,
- vInt)),
- IF(aggVal IS NULL,
- "",
- CONCAT(" AND id=",
- aggVal)));
-
-
-ELSE
- SET data = CONCAT(
- "INSERT IGNORE INTO `",
- targetSet,
- IF(versioned,
- '` (id, _iversion) SELECT data.id, data._iversion FROM `',
- '` (id) SELECT data.id FROM `'),
- sourceSet,
- "` AS data WHERE ",
- IF(o IS NULL OR vInt IS NULL,
- "1=1",
- CONCAT("data.id",
- o,
- vInt)),
- IF(aggVal IS NULL,
- "",
- CONCAT(" AND data.id=",
- aggVal)));
-END IF;
-
-Set @stmtIDFilterStr = data;
-PREPARE stmtIDFilter FROM @stmtIDFilterStr;
-EXECUTE stmtIDFilter;
-DEALLOCATE PREPARE stmtIDFilter;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `applyPOV` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `applyPOV`(in sourceSet VARCHAR(255),
- in targetSet VARCHAR(255),
- in propertiesTable VARCHAR(255),
- in refIdsTable VARCHAR(255),
- in o CHAR(4),
- in vText VARCHAR(255),
- in vInt INT,
- in vDouble DOUBLE,
- in unit_sig BIGINT,
- in vDoubleStdUnit DOUBLE,
- in stdUnit_sig BIGINT,
- in vDateTime VARCHAR(255),
- in vDateTimeDotNotation VARCHAR(255),
- in agg CHAR(3),
- in pname VARCHAR(255),
- in versioned BOOLEAN)
-POV_LABEL: BEGIN
- DECLARE data TEXT DEFAULT NULL;
- DECLARE sTextData VARCHAR(20000) DEFAULT NULL;
- DECLARE sNameData VARCHAR(20000) DEFAULT NULL;
- DECLARE sEnumData VARCHAR(20000) DEFAULT NULL;
- DECLARE sIntData VARCHAR(20000) DEFAULT NULL;
- DECLARE sDoubleData VARCHAR(20000) DEFAULT NULL;
- DECLARE sDatetimeData VARCHAR(20000) DEFAULT NULL;
- DECLARE sNullData VARCHAR(20000) DEFAULT NULL;
- DECLARE sDateData VARCHAR(20000) DEFAULT NULL;
- DECLARE sRefData VARCHAR(20000) DEFAULT NULL;
- DECLARE aggValue VARCHAR(255) DEFAULT NULL;
- DECLARE aggValueWhereClause VARCHAR(20000) DEFAULT NULL;
- DECLARE distinctUnits INT DEFAULT 0;
- DECLARE usedStdUnit BIGINT DEFAULT NULL;
- DECLARE keepTabl VARCHAR(255) DEFAULT NULL;
- DECLARE existence_op VARCHAR(255) DEFAULT "EXISTS";
-
- IF o = '->' THEN
-
- call applyRefPOV(sourceSet,targetSet, propertiesTable, refIdsTable, versioned);
- LEAVE POV_LABEL;
- ELSEIF o = '0' THEN
-
-
- SET vText = NULL;
- SET sTextData = 'SELECT domain_id, entity_id, property_id FROM `null_data` AS subdata';
-
-
-
- ELSEIF o = '!0' THEN
-
-
- SET vText = NULL;
-
- SET sTextData = CONCAT(
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `text_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `name_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `enum_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `integer_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `double_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `date_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `datetime_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, property_id FROM `reference_data` AS subdata ',
- 'WHERE subdata.value IS NOT NULL');
-
- ELSEIF o = "(" or o = "!(" THEN
- IF versioned THEN
- SET sTextData = IF(vText IS NULL,
- CONCAT(
- ' SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) ',
- 'AS _iversion, property_id FROM `date_data` UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_date_data`'),
- IF(vDateTimeDotNotation IS NULL, NULL,
- CONCAT(' SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) ',
- 'AS _iversion, property_id FROM `date_data` AS subdata WHERE ',
- getDateWhereClause(vDateTimeDotNotation, o), ' UNION ALL ',
- 'SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_date_data` ',
- 'AS subdata WHERE ', getDateWhereClause(vDateTimeDotNotation, o))));
- SET sDatetimeData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `datetime_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_datetime_data`',
- IF(vDateTime IS NULL, NULL,
- CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `datetime_data` AS subdata WHERE ', getDateTimeWhereClause(vDateTime, o), ' UNION ALL SELECT DISTINCT domain_id, entity_id,_iversion, property_id FROM `archive_datetime_data` AS subdata WHERE ', getDateTimeWhereClause(vDateTime, o))));
- ELSE
- SET sTextData = IF(vText IS NULL,
- ' SELECT DISTINCT domain_id, entity_id, property_id FROM `date_data`',
- IF(vDateTimeDotNotation IS NULL, NULL,
- CONCAT(' SELECT DISTINCT domain_id, entity_id, property_id FROM `date_data` AS subdata WHERE ',
- getDateWhereClause(vDateTimeDotNotation, o))));
- SET sDatetimeData = IF(vText IS NULL,
- ' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `datetime_data`',
- IF(vDateTime IS NULL, NULL,
- CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `datetime_data` ',
- 'AS subdata WHERE ', getDateTimeWhereClause(vDateTime, o))));
- END IF;
- SET vText = NULL;
- ELSEIF agg IS NOT NULL THEN
- IF versioned THEN
- SELECT 1 FROM versioned_agg_pov_filter_not_implemented;
- END IF;
-
-
-
- SET aggValueWhereClause = CONCAT(getDoubleWhereClause(vDouble, unit_sig, vDoubleStdUnit, stdUnit_sig, o), ' AND ');
- SET aggValueWhereClause = CONCAT(IF(aggValueWhereClause IS NULL, '', aggValueWhereClause), getAggValueWhereClause(sourceSet, propertiesTable));
-
-
- SET @aggValueStmtStr = CONCAT('SELECT ',agg,'(subdata.value), ', agg, '(convert_unit(subdata.unit_sig,subdata.value)), COUNT(DISTINCT standard_unit(subdata.unit_sig)), max(standard_unit(subdata.unit_sig)) INTO @sAggValue, @sAggValueConvert, @distinctUnits, @StdUnitSig FROM (SELECT entity_id, property_id, value, unit_sig FROM `integer_data` UNION ALL SELECT entity_id, property_id, value, unit_sig FROM `double_data`) AS subdata WHERE ', aggValueWhereClause);
-
-
- PREPARE stmtAggValueStmt FROM @aggValueStmtStr;
- EXECUTE stmtAggValueStmt;
- DEALLOCATE PREPARE stmtAggValueStmt;
-
- SET distinctUnits = @distinctUnits;
- SET aggValue = @sAggValue;
-
-
- IF distinctUnits = 1 THEN
- SET aggValue = @sAggValueConvert;
- SET usedStdUnit = @StdUnitSig;
- ELSE
- call raiseWarning(CONCAT("The filter POV(",IF(pname IS NULL, 'NULL', pname),",",IF(o IS NULL, 'NULL', o),",",IF(vText IS NULL, 'NULL', vText),") with the aggregate function '", agg, "' could not match the values against each other with their units. The values had different base units. Only their numric value had been taken into account." ));
- END IF;
-
- IF aggValue IS NULL THEN
- SET sTextData = 'SELECT NULL as domain_id, NULL as entity_id, NULL as property_id';
- ELSE
- SET sTextData = '';
- SET sIntData = CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `integer_data` as subdata WHERE ', getDoubleWhereClause(aggValue, usedStdUnit, aggValue, usedStdUnit, '='));
- SET sDoubleData = CONCAT(' SELECT DISTINCT domain_id, entity_id, property_id FROM `double_data` as subdata WHERE ', getDoubleWhereClause(aggValue, usedStdUnit, aggValue, usedStdUnit, '='));
- END IF;
-
- SET vText = NULL;
- ELSE
-
- IF versioned THEN
- SET sTextData = IF(vText IS NULL,
- 'SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `text_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_text_data` ',
- CONCAT(
- 'SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id ',
- 'FROM `text_data` AS subdata WHERE subdata.value ', o,' ? ',
- 'UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id ',
- 'FROM `archive_text_data` AS subdata WHERE subdata.value ', o, '?'
- ));
- SET sNameData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `name_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_name_data` ', CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `name_data` AS subdata WHERE subdata.value ', o, ' ? UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_name_data` AS subdata WHERE subdata.value ', o, '?'));
- SET sEnumData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `enum_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_enum_data` ', CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `enum_data` AS subdata WHERE subdata.value ', o, ' ? UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_enum_data` AS subdata WHERE subdata.value ', o, '?'));
- IF o = "!=" AND refIdsTable IS NOT NULL THEN
- SET existence_op = "NOT EXISTS";
- END IF;
- SET sRefData = IF(vText IS NULL,
- ' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `reference_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_reference_data`',
- IF(refIdsTable IS NULL,
- NULL,
- CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `reference_data` AS subdata WHERE ', existence_op, ' (SELECT 1 FROM `', refIdsTable, '` AS refIdsTable WHERE subdata.value=refIdsTable.id LIMIT 1) AND subdata.status != "REPLACEMENT" UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_reference_data` AS subdata WHERE ', existence_op, ' (SELECT 1 FROM `', refIdsTable, '` AS refIdsTable WHERE subdata.value=refIdsTable.id LIMIT 1) AND subdata.status != "REPLACEMENT"')));
- SET sDoubleData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT subdata.domain_id, subdata.entity_id, _get_head_iversion(subdata.entity_id) AS _iversion, subdata.property_id FROM `double_data` AS subdata UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_double_data` ', IF(vDouble IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id), property_id FROM `double_data` AS subdata WHERE ', getDoubleWhereClause(vDouble,unit_sig,vDoubleStdUnit,stdUnit_sig,o), ' UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_double_data` AS subdata WHERE ', getDoubleWhereClause(vDouble, unit_sig, vDoubleStdUnit, stdUnit_sig, o))));
- SET sIntData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT subdata.domain_id, subdata.entity_id, _get_head_iversion(subdata.entity_id) AS _iversion, subdata.property_id FROM `integer_data` AS subdata UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_integer_data`', IF(vInt IS NULL AND vDoubleStdUnit IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `integer_data` AS subdata WHERE ', getDoubleWhereClause(vInt, unit_sig, vDoubleStdUnit, stdUnit_sig, o), ' UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_integer_data` AS subdata WHERE ', getDoubleWhereClause(vInt, unit_sig, vDoubleStdUnit, stdUnit_sig, o))));
- SET sDatetimeData = IF(vText IS NULL,' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `datetime_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_datetime_data`', IF(vDateTime IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `datetime_data` AS subdata WHERE ',getDateTimeWhereClause(vDateTime,o), ' UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_datetime_data` AS subdata WHERE ',getDateTimeWhereClause(vDateTime,o))));
- SET sDateData = IF(vText IS NULL,' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `date_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_date_data`', IF(vDateTimeDotNotation IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `date_data` AS subdata WHERE ', getDateWhereClause(vDateTimeDotNotation,o), ' UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_date_data` AS subdata WHERE ', getDateWhereClause(vDateTimeDotNotation,o))));
- SET sNullData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id FROM `null_data` UNION ALL SELECT DISTINCT domain_id, entity_id, _iversion, property_id FROM `archive_null_data`', NULL);
-
- ELSE
- SET sTextData = IF(vText IS NULL, 'SELECT DISTINCT domain_id, entity_id, property_id FROM `text_data`', CONCAT('SELECT DISTINCT domain_id, entity_id, property_id FROM `text_data` AS subdata WHERE subdata.value ',o,' ?'));
- SET sNameData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `name_data`', CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `name_data` AS subdata WHERE subdata.value ', o, ' ?'));
- SET sEnumData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `enum_data`', CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `enum_data` AS subdata WHERE subdata.value ', o, ' ?'));
- IF o = "!=" AND refIdsTable IS NOT NULL THEN
- SET existence_op = "NOT EXISTS";
- END IF;
- SET sRefData = IF(vText IS NULL,
- ' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `reference_data`',
- IF(refIdsTable IS NULL,
- NULL,
- CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `reference_data` AS subdata WHERE ',existence_op ,' (SELECT 1 FROM `', refIdsTable, '` AS refIdsTable WHERE subdata.value=refIdsTable.id LIMIT 1) AND subdata.status != "REPLACEMENT"')));
- SET sDoubleData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT subdata.domain_id, subdata.entity_id, subdata.property_id FROM `double_data` AS subdata', IF(vDouble IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `double_data` AS subdata WHERE ', getDoubleWhereClause(vDouble,unit_sig,vDoubleStdUnit,stdUnit_sig,o))));
- SET sIntData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT subdata.domain_id, subdata.entity_id, subdata.property_id FROM `integer_data` AS subdata', IF(vInt IS NULL AND vDoubleStdUnit IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `integer_data` AS subdata WHERE ', getDoubleWhereClause(vInt, unit_sig, vDoubleStdUnit, stdUnit_sig, o))));
- SET sDatetimeData = IF(vText IS NULL,' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `datetime_data`', IF(vDateTime IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `datetime_data` AS subdata WHERE ',getDateTimeWhereClause(vDateTime,o))));
- SET sDateData = IF(vText IS NULL,' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `date_data`', IF(vDateTimeDotNotation IS NULL, NULL, CONCAT(' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `date_data` AS subdata WHERE ',getDateWhereClause(vDateTimeDotNotation,o))));
- SET sNullData = IF(vText IS NULL, ' UNION ALL SELECT DISTINCT domain_id, entity_id, property_id FROM `null_data`', NULL);
- END IF;
-
- END IF;
-
- SET data = CONCAT('(',sTextData,
- IF(sNameData IS NULL, '', sNameData),
- IF(sEnumData IS NULL, '', sEnumData),
- IF(sDoubleData IS NULL, '', sDoubleData),
- IF(sIntData IS NULL, '', sIntData),
- IF(sDatetimeData IS NULL, '', sDatetimeData),
- IF(sDateData IS NULL, '', sDateData),
- IF(sRefData IS NULL, '', sRefData),
- IF(sNullData IS NULL, '', sNullData),
- ')'
- );
-
-
- call createTmpTable(keepTabl, versioned);
- IF versioned THEN
-
- SET @stmtPOVkeepTblStr = CONCAT(
- 'INSERT IGNORE INTO `', keepTabl, '` (id, _iversion) SELECT entity_id AS id, _iversion FROM ', data,
- ' as data', IF(propertiesTable IS NULL, '', CONCAT(
- ' WHERE EXISTS (Select 1 from `', propertiesTable, '` AS prop ',
- 'WHERE prop.id = data.property_id AND (prop.id2=data.entity_id OR prop.id2=0))')));
-
- IF targetSet IS NOT NULL THEN
- SET @stmtPOVStr = CONCAT('INSERT IGNORE INTO `',
- targetSet,
- '` (id, _iversion) SELECT source.id, source._iversion FROM `',
- keepTabl,
- '` AS source');
- ELSE
-
- SET @stmtPOVStr = CONCAT('DELETE FROM `',
- sourceSet,
- '` WHERE NOT EXISTS (SELECT 1 FROM `',
- keepTabl,
- '` AS data WHERE data.id=`',
- sourceSet,
- '`.`id` AND data._iversion=`',
- sourceSet,
- '`._iversion LIMIT 1)');
-
- END IF;
-
-
- PREPARE stmt3 FROM @stmtPOVStr;
- PREPARE stmtPOVkeepTbl FROM @stmtPOVkeepTblStr;
- IF vText IS NULL THEN
- EXECUTE stmtPOVkeepTbl;
- ELSE
- SET @vText = vText;
- EXECUTE stmtPOVkeepTbl USING @vText, @vText, @vText, @vText, @vText, @vText;
- END IF;
- EXECUTE stmt3;
- DEALLOCATE PREPARE stmt3;
- DEALLOCATE PREPARE stmtPOVkeepTbl;
- ELSE
-
- SET @stmtPOVkeepTblStr = CONCAT('INSERT IGNORE INTO `', keepTabl, '` (id) SELECT DISTINCT entity_id AS id FROM ', data, ' as data', IF(propertiesTable IS NULL, '', CONCAT(' WHERE EXISTS (Select 1 from `', propertiesTable, '` AS prop WHERE prop.id = data.property_id AND (prop.id2=data.entity_id OR prop.id2=0))')));
-
- SET @stmtPOVStr = CONCAT(
- IF(targetSet IS NULL,
- CONCAT('DELETE FROM `',
- sourceSet,
- '` WHERE NOT EXISTS (SELECT 1 FROM `'),
- CONCAT('INSERT IGNORE INTO `',
- targetSet,
- '` (id) SELECT id FROM `',
- sourceSet,
- '` WHERE EXISTS (SELECT 1 FROM `')),
- keepTabl,
- '` AS data WHERE data.id=`',
- sourceSet,
- '`.`id` LIMIT 1)'
- );
-
-
- PREPARE stmt3 FROM @stmtPOVStr;
- PREPARE stmtPOVkeepTbl FROM @stmtPOVkeepTblStr;
- IF vText IS NULL THEN
- EXECUTE stmtPOVkeepTbl;
- ELSE
- SET @vText = vText;
- EXECUTE stmtPOVkeepTbl USING @vText, @vText, @vText;
- END IF;
- EXECUTE stmt3;
- DEALLOCATE PREPARE stmt3;
- DEALLOCATE PREPARE stmtPOVkeepTbl;
- END IF;
-
- SELECT @stmtPOVkeepTblStr as applyPOVStmt1, @stmtPOVStr as applyPOVStmt2, keepTabl as applyPOVIntermediateResultSet;
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `applyRefPOV` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `applyRefPOV`(in sourceSet VARCHAR(255), in targetSet VARCHAR(255),
- in properties VARCHAR(255), in refs VARCHAR(255),
- in versioned BOOLEAN)
-BEGIN
- DECLARE data VARCHAR(20000) DEFAULT CONCAT(
- '(SELECT domain_id, entity_id, property_id FROM `reference_data` AS subdata ',
- 'WHERE EXISTS (SELECT 1 FROM `', refs, '` AS refs WHERE subdata.value=refs.id LIMIT 1))');
-
- IF versioned THEN
- SET data = CONCAT(
- '(SELECT domain_id, entity_id, _get_head_iversion(entity_id) AS _iversion, property_id ',
- 'FROM `reference_data` AS subdata WHERE EXISTS (',
- 'SELECT 1 FROM `', refs, '` AS refs WHERE subdata.value=refs.id LIMIT 1) ',
- 'UNION ALL SELECT domain_id, entity_id, _iversion, property_id ',
- 'FROM `archive_reference_data` AS subdata WHERE EXISTS (',
- 'SELECT 1 FROM `', refs, '` AS refs WHERE subdata.value=refs.id LIMIT 1))');
- END IF;
- SET @stmtRefPOVStr = makeStmt(sourceSet,targetSet,data,properties, versioned);
-
- PREPARE stmt4 FROM @stmtRefPOVStr;
- EXECUTE stmt4;
-
- SELECT @stmtRefPOVstr as applyRefPOVStmt;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `applySAT` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `applySAT`(in sourceSet VARCHAR(255), in targetSet VARCHAR(255), in loc MEDIUMTEXT, in op CHAR(5))
-BEGIN
-
- IF targetSet IS NULL OR sourceSet = targetSet THEN
- SET @stmtSATString = CONCAT('DELETE FROM `', sourceSet, '` WHERE id NOT IN (SELECT file_id FROM files WHERE path ', op, ' ?)');
- ELSE
- SET @stmtSATString = CONCAT('INSERT INTO `', targetSet, '` (id) SELECT data.id FROM `',sourceSet,'` as data WHERE EXISTS (SELECT 1 FROM `files` as f WHERE f.file_id=data.id AND f.path ', op, ' ?)');
- END IF;
- PREPARE stmtSAT FROM @stmtSATString;
- SET @loc = loc;
- EXECUTE stmtSAT USING @loc;
- DEALLOCATE PREPARE stmtSAT;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `applyTransactionFilter` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `applyTransactionFilter`(in sourceSet VARCHAR(255), targetSet VARCHAR(255), in transaction VARCHAR(255), in operator_u CHAR(2), in realm VARCHAR(255), in userName VARCHAR(255), in ilb BIGINT, in ilb_nanos INT UNSIGNED, in eub BIGINT, in eub_nanos INT UNSIGNED, in operator_t CHAR(2))
-BEGIN
- DECLARE data TEXT default CONCAT('(SELECT entity_id FROM transaction_log AS t WHERE t.transaction=\'',
- transaction,
- '\'',
- IF(userName IS NOT NULL,
- CONCAT(' AND t.realm', operator_u, '? AND t.username', operator_u, '?'),
- ''
- ),
- IF(ilb IS NOT NULL,
- CONCAT(" AND", constructDateTimeWhereClauseForColumn("t.seconds", "t.nanos", ilb, ilb_nanos, eub, eub_nanos, operator_t)),
- ""
- ),
- ')'
- );
-
- SET @stmtTransactionStr = makeStmt(sourceSet, targetSet, data, NULL, FALSE);
- PREPARE stmtTransactionFilter from @stmtTransactionStr;
- IF userName IS NOT NULL THEN
- SET @userName = userName;
- SET @realm = realm;
- EXECUTE stmtTransactionFilter USING @realm, @userName;
- ELSE
- EXECUTE stmtTransactionFilter;
- END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `calcComplementUnion` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `calcComplementUnion`(in targetSet VARCHAR(255), in subResultSet VARCHAR(255), in universe VARCHAR(255), in versioned BOOLEAN)
-BEGIN
- IF versioned AND universe = "entities" THEN
- SET @stmtComplementUnionStr = CONCAT(
- 'INSERT IGNORE INTO `', targetSet,
- '` SELECT e.id, _get_head_iversion(e.id) FROM entities as e WHERE NOT EXISTS ( SELECT 1 FROM `',
- subResultSet,
- '` AS diff WHERE diff.id=e.id AND diff._iversion = _get_head_iversion(e.id)) UNION ALL SELECT e.id, e._iversion FROM archive_entities AS e WHERE NOT EXISTS ( SELECT 1 FROM `',
- subResultSet,
- '` as diff WHERE e.id = diff.id AND e._iversion = diff._iversion)');
- ELSEIF versioned THEN
- SET @stmtComplementUnionStr = CONCAT(
- 'INSERT IGNORE INTO `', targetSet,
- '` SELECT id FROM `',universe,
- '` AS universe WHERE NOT EXISTS ( SELECT 1 FROM `',
- subResultSet,'`
- AS diff WHERE diff.id=universe.id AND diff._iversion = universe.id_version)');
- ELSE
- SET @stmtComplementUnionStr = CONCAT('INSERT IGNORE INTO `', targetSet, '` SELECT id FROM `',universe, '` AS universe WHERE NOT EXISTS ( SELECT 1 FROM `', subResultSet,'` AS diff WHERE diff.id=universe.id)');
- END IF;
- PREPARE stmtComplementUnion FROM @stmtComplementUnionStr;
- EXECUTE stmtComplementUnion;
- DEALLOCATE PREPARE stmtComplementUnion;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `calcDifference` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `calcDifference`(in resultSetTable VARCHAR(255), in diff VARCHAR(255), in versioned BOOLEAN)
-BEGIN
- IF versioned THEN
- SET @diffStmtStr = CONCAT('DELETE FROM `', resultSetTable, '` WHERE EXISTS ( SELECT 1 FROM `', diff,'` AS diff WHERE diff.id=`',resultSetTable,'`.`id` AND diff._iversion=`', resultSetTable, '`.`_iversion`)');
- ELSE
- SET @diffStmtStr = CONCAT('DELETE FROM `', resultSetTable, '` WHERE EXISTS ( SELECT 1 FROM `', diff,'` AS diff WHERE diff.id=`',resultSetTable,'`.`id`)');
- END IF;
- PREPARE diffStmt FROM @diffStmtStr;
- EXECUTE diffStmt;
- DEALLOCATE PREPARE diffStmt;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `calcIntersection` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `calcIntersection`(in resultSetTable VARCHAR(255), in intersectWith VARCHAR(255), in versioned BOOLEAN)
-BEGIN
- IF versioned THEN
- SET @diffStmtStr = CONCAT('DELETE FROM `',
- resultSetTable,
- '` WHERE NOT EXISTS ( SELECT 1 FROM `',
- intersectWith,
- '` AS diff WHERE diff.id=`',
- resultSetTable,
- '`.`id` AND diff._iversion=`',
- resultSetTable,
- '`.`_iversion`)');
- ELSE
- SET @diffStmtStr = CONCAT('DELETE FROM `', resultSetTable, '` WHERE NOT EXISTS ( SELECT 1 FROM `', intersectWith,'` AS diff WHERE diff.id=`',resultSetTable,'`.`id`)');
- END IF;
- PREPARE diffStmt FROM @diffStmtStr;
- EXECUTE diffStmt;
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `calcUnion` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `calcUnion`(in targetSet VARCHAR(255), in sourceSet VARCHAR(255))
-BEGIN
- SET @diffStmtStr = CONCAT('INSERT IGNORE INTO `', targetSet, '` SELECT * FROM `',sourceSet,'`');
- PREPARE diffStmt FROM @diffStmtStr;
- EXECUTE diffStmt;
- DEALLOCATE PREPARE diffStmt;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `cleanUpLinCon` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `cleanUpLinCon`()
-BEGIN
-
- DELETE FROM units_lin_con WHERE NOT EXISTS (SELECT '1' FROM double_data WHERE unit_sig=signature_from) AND NOT EXISTS (SELECT '1' FROM integer_data WHERE unit_sig=signature_from);
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `cleanUpQuery` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `cleanUpQuery`()
-BEGIN
- CREATE TEMPORARY TABLE IF NOT EXISTS warnings (warning TEXT NOT NULL);
- SELECT * from warnings;
-
- SET @pstmtstr = CONCAT('DROP TEMPORARY TABLE IF EXISTS `warnings`',
- IF(@tempTableList IS NULL, '', CONCAT(',',@tempTableList)));
- PREPARE pstmt FROM @pstmtstr;
- EXECUTE pstmt;
-
- SET @tempTableList = NULL;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `copyTable` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `copyTable`(in fromTable VARCHAR(255), in toTable VARCHAR(255))
-BEGIN
- SET @copyTableStmtStr = CONCAT('INSERT IGNORE INTO `', toTable, '` (id) SELECT id FROM `', fromTable, '`');
- PREPARE copyTableStmt FROM @copyTableStmtStr;
- EXECUTE copyTableStmt;
- DEALLOCATE PREPARE copyTableStmt;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `createTmpTable` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `createTmpTable`(out newTableName VARCHAR(255), in versioned BOOLEAN)
-BEGIN
- call registerTempTableName(newTableName);
-
- IF versioned THEN
- SET @createTableStmtStr = CONCAT('CREATE TEMPORARY TABLE `', newTableName,
- '` ( id INT UNSIGNED, _iversion INT UNSIGNED, PRIMARY KEY (id, _iversion))' );
- ELSE
- SET @createTableStmtStr = CONCAT('CREATE TEMPORARY TABLE `', newTableName,'` ( id INT UNSIGNED PRIMARY KEY)' );
- END IF;
-
- PREPARE createTableStmt FROM @createTableStmtStr;
- EXECUTE createTableStmt;
- DEALLOCATE PREPARE createTableStmt;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `createTmpTable2` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `createTmpTable2`(out newTableName VARCHAR(255))
-BEGIN
- call registerTempTableName(newTableName);
- SET @createTableStmtStr = CONCAT('CREATE TEMPORARY TABLE `', newTableName,
- '` ( id INT UNSIGNED, id2 INT UNSIGNED, domain INT UNSIGNED, CONSTRAINT `',
- newTableName,'PK` PRIMARY KEY (id,id2,domain) )' );
-
- PREPARE createTableStmt FROM @createTableStmtStr;
- EXECUTE createTableStmt;
- DEALLOCATE PREPARE createTableStmt;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `deleteEntity` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `deleteEntity`(in EntityID INT UNSIGNED)
-BEGIN
-
-
- DELETE FROM files where file_id=EntityID;
-
-
- DELETE FROM data_type
- WHERE ( domain_id = 0
- AND entity_id = 0
- AND property_id = EntityID )
- OR datatype = EntityID;
- DELETE FROM collection_type
- WHERE domain_id = 0
- AND entity_id = 0
- AND property_id = EntityID;
-
-
- DELETE FROM name_data
- WHERE domain_id = 0
- AND entity_id = EntityID
- AND property_id = 20;
-
- DELETE FROM entities where id=EntityID;
-
-
- DELETE FROM entity_acl
- WHERE NOT EXISTS (
- SELECT 1 FROM entities
- WHERE entities.acl = entity_acl.id LIMIT 1)
- AND NOT EXISTS (
- SELECT 1 FROM archive_entities
- WHERE archive_entities.acl = entity_acl.id LIMIT 1);
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `deleteEntityProperties` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `deleteEntityProperties`(in EntityID INT UNSIGNED)
-BEGIN
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
-
- CALL deleteIsa(EntityID);
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
- SELECT max(e._iversion) INTO IVersion
- FROM entity_version AS e
- WHERE e.entity_id = EntityID;
-
-
- INSERT INTO archive_reference_data (domain_id, entity_id,
- property_id, value, value_iversion, status, pidx, _iversion)
- SELECT domain_id, entity_id, property_id, value, value_iversion,
- status, pidx, IVersion AS _iversion
- FROM reference_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_null_data (domain_id, entity_id,
- property_id, status, pidx, _iversion)
- SELECT domain_id, entity_id, property_id, status,
- pidx, IVersion AS _iversion
- FROM null_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_text_data (domain_id, entity_id,
- property_id, value, status, pidx, _iversion)
- SELECT domain_id, entity_id, property_id, value, status,
- pidx, IVersion AS _iversion
- FROM text_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_name_data (domain_id, entity_id,
- property_id, value, status, pidx, _iversion)
- SELECT domain_id, entity_id, property_id, value, status,
- pidx, IVersion AS _iversion
- FROM name_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_enum_data (domain_id, entity_id,
- property_id, value, status, pidx, _iversion)
- SELECT domain_id, entity_id, property_id, value, status,
- pidx, IVersion AS _iversion
- FROM enum_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_integer_data (domain_id, entity_id,
- property_id, value, status, pidx, _iversion, unit_sig)
- SELECT domain_id, entity_id, property_id, value, status,
- pidx, IVersion AS _iversion, unit_sig
- FROM integer_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_double_data (domain_id, entity_id,
- property_id, value, status, pidx, _iversion, unit_sig)
- SELECT domain_id, entity_id, property_id, value, status,
- pidx, IVersion AS _iversion, unit_sig
- FROM double_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_datetime_data (domain_id, entity_id,
- property_id, value, value_ns, status, pidx, _iversion)
- SELECT domain_id, entity_id, property_id, value, value_ns,
- status, pidx, IVersion AS _iversion
- FROM datetime_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_date_data (domain_id, entity_id,
- property_id, value, status, pidx, _iversion)
- SELECT domain_id, entity_id, property_id, value, status,
- pidx, IVersion AS _iversion
- FROM date_data
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_name_overrides (domain_id, entity_id,
- property_id, name, _iversion)
- SELECT domain_id, entity_id, property_id, name,
- IVersion AS _iversion
- FROM name_overrides
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_desc_overrides (domain_id, entity_id,
- property_id, description, _iversion)
- SELECT domain_id, entity_id, property_id, description,
- IVersion AS _iversion
- FROM desc_overrides
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_data_type (domain_id, entity_id,
- property_id, datatype, _iversion)
- SELECT domain_id, entity_id, property_id, datatype,
- IVersion AS _iversion
- FROM data_type
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_collection_type (domain_id, entity_id,
- property_id, collection, _iversion)
- SELECT domain_id, entity_id, property_id, collection,
- IVersion AS _iversion
- FROM collection_type
- WHERE (domain_id = 0 AND entity_id = EntityID)
- OR domain_id = EntityID;
-
- INSERT INTO archive_query_template_def (id, definition, _iversion)
- SELECT id, definition, IVersion AS _iversion
- FROM query_template_def
- WHERE id = EntityID;
-
- END IF;
-
- DELETE FROM reference_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM null_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM text_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM name_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM enum_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM integer_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM double_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM datetime_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM date_data
- where (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
-
- DELETE FROM name_overrides
- WHERE (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM desc_overrides
- WHERE (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
-
- DELETE FROM data_type
- WHERE (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
- DELETE FROM collection_type
- WHERE (domain_id=0 AND entity_id=EntityID) OR domain_id=EntityID;
-
- DELETE FROM query_template_def WHERE id=EntityID;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `deleteIsa` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `deleteIsa`(IN EntityID INT UNSIGNED)
-BEGIN
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
- SELECT max(_iversion) INTO IVersion
- FROM entity_version
- WHERE entity_id = EntityID;
-
-
- INSERT IGNORE INTO archive_isa (child, child_iversion, parent, direct)
- SELECT e.child, IVersion AS child_iversion, e.parent, rpath = EntityID
- FROM isa_cache AS e
- WHERE e.child = EntityID;
- END IF;
-
- DELETE FROM isa_cache
- WHERE child = EntityID
- OR rpath = EntityID
- OR rpath LIKE concat('%>', EntityID)
- OR rpath LIKE concat('%>', EntityID, '>%');
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `deleteLinCon` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `deleteLinCon`(in sig BIGINT)
-BEGIN
-
- DELETE FROM units_lin_con WHERE signature_from=sig;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `delete_all_entity_versions` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `delete_all_entity_versions`(
- in EntityID INT UNSIGNED)
-BEGIN
-
- DELETE FROM entity_version WHERE entity_id = EntityID;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `entityACL` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `entityACL`(out ACLID INT UNSIGNED, in ACLSTR VARBINARY(65525))
-BEGIN
- SELECT id INTO ACLID FROM entity_acl as t WHERE t.acl=ACLSTR LIMIT 1;
- IF ACLID IS NULL THEN
- INSERT INTO entity_acl (acl) VALUES (ACLSTR);
- SET ACLID = LAST_INSERT_ID();
- END IF;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `finishNegationFilter` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `finishNegationFilter`(in resultSetTable VARCHAR(255), in diff VARCHAR(255))
-BEGIN
- call calcDifference(resultSetTable, diff);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `finishSubProperty` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `finishSubProperty`(in sourceSet VARCHAR(255),in targetSet VARCHAR(255),
- in list VARCHAR(255), in versioned BOOLEAN)
-BEGIN
- DECLARE data VARCHAR(20000) DEFAULT CONCAT('`',list,'`');
- SET @finishSubPropertyStmtStr = makeStmt(sourceSet, targetSet, data, NULL, versioned);
-
- PREPARE finishSubPropertyStmt FROM @finishSubPropertyStmtStr;
- EXECUTE finishSubPropertyStmt;
- DEALLOCATE PREPARE finishSubPropertyStmt;
-
- SELECT @finishSubPropertyStmtStr AS finishSubPropertyStmt;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `getChildren` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `getChildren`(in tableName varchar(255), in versioned BOOLEAN)
-BEGIN
- DECLARE found_children INT UNSIGNED DEFAULT 0;
-
- DROP TEMPORARY TABLE IF EXISTS dependTemp;
- CREATE TEMPORARY TABLE dependTemp (id INT UNSIGNED, _iversion INT UNSIGNED, PRIMARY KEY(id, _iversion));
-
-
- SET @initDepend = CONCAT(
- 'INSERT IGNORE INTO dependTemp (id, _iversion) SELECT i.child, ',
- IF(versioned,
- '_get_head_iversion(i.child)',
- '0'),
- ' FROM isa_cache AS i INNER JOIN `',
- tableName,
- '` AS t ON (i.parent=t.id);');
- PREPARE initDependStmt FROM @initDepend;
-
- EXECUTE initDependStmt;
- SET found_children = found_children + ROW_COUNT();
-
-
-
- IF versioned IS TRUE THEN
- SET @initDepend = CONCAT(
- 'INSERT IGNORE INTO dependTemp (id, _iversion) ',
- 'SELECT i.child, i.child_iversion FROM archive_isa AS i INNER JOIN `',
- tableName,
- '` AS t ON (i.parent=t.id);');
- PREPARE initDependStmt FROM @initDepend;
-
- EXECUTE initDependStmt;
- SET found_children = found_children + ROW_COUNT();
- END IF;
-
-
-
-
- IF found_children != 0 THEN
- SET @transfer = CONCAT(
- 'INSERT IGNORE INTO `',
- tableName,
- IF(versioned,
- '` (id, _iversion) SELECT id, _iversion FROM dependTemp',
- '` (id) SELECT id FROM dependTemp'));
- PREPARE transferstmt FROM @transfer;
- EXECUTE transferstmt;
- DEALLOCATE PREPARE transferstmt;
- END IF;
-
-
- DEALLOCATE PREPARE initDependStmt;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `getDependentEntities` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `getDependentEntities`(in EntityID INT UNSIGNED)
-BEGIN
-
-DROP TEMPORARY TABLE IF EXISTS refering;
-CREATE TEMPORARY TABLE refering (
-id INT UNSIGNED UNIQUE
-);
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM reference_data WHERE (value=EntityID OR property_id=EntityID) AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM reference_data WHERE (value=EntityID OR property_id=EntityID) AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM text_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM text_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM enum_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM enum_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM name_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM name_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM integer_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM integer_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM double_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM double_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM datetime_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM datetime_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM date_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM date_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id FROM null_data WHERE property_id=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id FROM null_data WHERE property_id=EntityID AND domain_id!=EntityID AND entity_id!=EntityID AND domain_id!=0;
-
-INSERT IGNORE INTO refering (id) SELECT entity_id from data_type WHERE datatype=EntityID AND domain_id=0 AND entity_id!=EntityID;
-INSERT IGNORE INTO refering (id) SELECT domain_id from data_type WHERE datatype=EntityID;
-
-
-Select id from refering WHERE id!=0 and id!=EntityID;
-
-DROP TEMPORARY TABLE refering;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `getFile` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8mb4 */ ;
-/*!50003 SET character_set_results = utf8mb4 */ ;
-/*!50003 SET collation_connection = utf8mb4_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `getFile`(in FileID INT)
-BEGIN
-
-Select name, description, role into @name, @description, @role from entities where id=FileID LIMIT 1;
-
-IF @role = 'file' Then
- Select path, hash, size into @FilePath, @FileHash, @FileSize from files where file_id=FileID LIMIT 1;
- Select timestamp, user_id, user_agent into @FileCreated, @FileCreator, @FileGenerator from history where entity_id=FileID AND event='insertion' LIMIT 1;
-
-Select
-FileID as FileID,
-@FilePath as FilePath,
-@FileSize as FileSize,
-@FileHash as FileHash,
-@FileDescription as FileDescription,
-@FileCreated as FileCreated,
-@FileCreator as FileCreator,
-@FileGenerator as FileGenerator,
-NULL as FileOwner,
-NULL as FilePermission,
-NULL as FileChecksum;
-
-END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `getFileIdByPath` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `getFileIdByPath`(in FilePath VARCHAR(255))
-BEGIN
-
-Select file_id as FileID from files where path=FilePath LIMIT 1;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `getRole` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `getRole`(in RoleName VARCHAR(255))
-BEGIN
-
-Select e.id INTO @RoleID from entities e where e.name=RoleName AND e.role=RoleName LIMIT 1;
-
-call retrieveEntity(@RoleID);
-
-
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `getRules` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8mb4 */ ;
-/*!50003 SET character_set_results = utf8mb4 */ ;
-/*!50003 SET collation_connection = utf8mb4_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `getRules`(in DomainID INT UNSIGNED, in EntityID INT UNSIGNED, in TransType VARCHAR(255))
-BEGIN
-
-
-
-
-SELECT rules.transaction, rules.criterion, rules.modus from rules where if(DomainID is null, rules.domain_id=0,rules.domain_id=DomainID) AND if(EntityID is null, rules.entity_id=0,rules.entity_id=EntityID) AND if(TransType is null,true=true,rules.transaction=TransType);
-
-
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `get_version_history` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `get_version_history`(
- in EntityID INT UNSIGNED)
-BEGIN
-
- SELECT c.version AS child,
- NULL as parent,
- t.seconds AS child_seconds,
- t.nanos AS child_nanos,
- t.username AS child_username,
- t.realm AS child_realm
- FROM entity_version AS c INNER JOIN transactions as t
- ON ( c.srid = t.srid )
- WHERE c.entity_id = EntityID
- AND c._ipparent is Null
-
-
-
-
-
-
- UNION SELECT c.version AS child,
- p.version AS parent,
- t.seconds AS child_seconds,
- t.nanos AS child_nanos,
- t.username AS child_username,
- t.realm AS child_realm
- FROM entity_version AS p
- INNER JOIN entity_version as c
- INNER JOIN transactions AS t
- ON (c._ipparent = p._iversion
- AND c.entity_id = p.entity_id
- AND t.srid = c.srid)
- WHERE p.entity_id = EntityID;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initAutoIncrement` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initAutoIncrement`()
-BEGIN
-
- SELECT @max := MAX(entity_id)+ 1 FROM transaction_log;
- IF @max IS NOT NULL THEN
- SET @stmtStr = CONCAT('ALTER TABLE entities AUTO_INCREMENT=',@max);
- PREPARE stmt FROM @stmtStr;
- EXECUTE stmt;
- DEALLOCATE PREPARE stmt;
- END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initBackReference` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initBackReference`(in pid INT UNSIGNED, in pname VARCHAR(255), in entity_id INT UNSIGNED, in ename VARCHAR(255))
-BEGIN
- DECLARE propertiesTable VARCHAR(255) DEFAULT NULL;
- DECLARE entitiesTable VARCHAR(255) DEFAULT NULL;
-
- IF pname IS NOT NULL THEN
-
- call createTmpTable(propertiesTable, FALSE);
- call initSubEntity(pid, pname, propertiesTable);
- END IF;
-
- IF ename IS NOT NULL THEN
-
- call createTmpTable(entitiesTable, FALSE);
- call initSubEntity(entity_id, ename, entitiesTable);
- END IF;
-
- SELECT propertiesTable, entitiesTable;
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initDisjunctionFilter` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initDisjunctionFilter`(in versioned BOOLEAN)
-BEGIN
- call initEmptyTargetSet(NULL, versioned);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initEmptyTargetSet` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initEmptyTargetSet`(in targetSet VARCHAR(255), in versioned BOOLEAN)
-BEGIN
- DECLARE newTableName VARCHAR(255) DEFAULT targetSet;
- IF targetSet IS NOT NULL THEN
- SET @isNotEmptyVar = NULL;
- SET @isEmptyStmtStr = CONCAT("SELECT 1 INTO @isNotEmptyVar FROM `",targetSet,"` LIMIT 1");
- PREPARE stmtIsNotEmpty FROM @isEmptyStmtStr;
- EXECUTE stmtIsNotEmpty;
- DEALLOCATE PREPARE stmtIsNotEmpty;
- IF @isNotEmptyVar IS NOT NULL THEN
- call createTmpTable(newTableName, versioned);
- END IF;
- ELSE
- call createTmpTable(newTableName, versioned);
- END IF;
- SELECT newTableName AS newTableName;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initEntity` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initEntity`(in eid INT UNSIGNED, in ename VARCHAR(255),
- in enameLike VARCHAR(255), in enameRegexp VARCHAR(255),
- in resultset VARCHAR(255), in versioned BOOLEAN)
-initEntityLabel: BEGIN
- DECLARE select_columns VARCHAR(255) DEFAULT '` (id) SELECT entity_id FROM name_data ';
- SET @initEntityStmtStr = NULL;
-
-
-
- IF versioned IS TRUE THEN
- SET select_columns = '` (id, _iversion) SELECT entity_id, _get_head_iversion(entity_id) FROM name_data ';
- END IF;
- IF ename IS NOT NULL THEN
- SET @initEntityStmtStr = CONCAT(
- 'INSERT IGNORE INTO `',
- resultset,
- select_columns,
- 'WHERE value=?; ');
- SET @query_param = ename;
- ELSEIF enameLike IS NOT NULL THEN
- SET @initEntityStmtStr = CONCAT(
- 'INSERT IGNORE INTO `',
- resultset,
- select_columns,
- 'WHERE value LIKE ?;');
- SET @query_param = enameLike;
- ELSEIF enameRegexp IS NOT NULL THEN
- SET @initEntityStmtStr = CONCAT(
- 'INSERT IGNORE INTO `',
- resultset,
- select_columns,
- 'WHERE value REGEXP ?;');
- SET @query_param = enameRegexp;
- END IF;
-
-
- IF @initEntityStmtStr IS NOT NULL THEN
- PREPARE initEntityStmt FROM @initEntityStmtStr;
- EXECUTE initEntityStmt USING @query_param;
- DEALLOCATE PREPARE initEntityStmt;
- END IF;
-
- IF eid IS NOT NULL THEN
-
- SET @initEntityStmtStr = CONCAT(
- 'INSERT IGNORE INTO `',
- resultset,
- IF(versioned,
- '` (id, _iversion) SELECT id, _get_head_iversion(id) ',
- '` (id) SELECT id '),
- 'FROM entities WHERE id=',eid,';');
- PREPARE initEntityStmt FROM @initEntityStmtStr;
- EXECUTE initEntityStmt;
- DEALLOCATE PREPARE initEntityStmt;
- END IF;
-
-
-
-
- IF versioned IS TRUE THEN
- SET select_columns = '` (id, _iversion) SELECT entity_id, _iversion FROM archive_name_data ';
- IF ename IS NOT NULL THEN
- SET @initEntityStmtStr = CONCAT(
- 'INSERT IGNORE INTO `',
- resultset,
- select_columns,
- 'WHERE value=?; ');
- SET @query_param = ename;
- ELSEIF enameLike IS NOT NULL THEN
- SET @initEntityStmtStr = CONCAT(
- 'INSERT IGNORE INTO `',
- resultset,
- select_columns,
- 'WHERE value LIKE ?;');
- SET @query_param = enameLike;
- ELSEIF enameRegexp IS NOT NULL THEN
- SET @initEntityStmtStr = CONCAT(
- 'INSERT IGNORE INTO `',
- resultset,
- 'WHERE value REGEXP ?;');
- SET @query_param = enameRegexp;
- END IF;
-
-
- IF @initEntityStmtStr IS NOT NULL THEN
- PREPARE initEntityStmt FROM @initEntityStmtStr;
- EXECUTE initEntityStmt USING @query_param;
- DEALLOCATE PREPARE initEntityStmt;
- END IF;
- END IF;
-
-
-
- IF @initEntityStmtStr IS NOT NULL THEN
- call getChildren(resultset, versioned);
- END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initPOVPropertiesTable` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initPOVPropertiesTable`(in pid INT UNSIGNED, in pname VARCHAR(255), in sourceSet VARCHAR(255))
-BEGIN
- DECLARE propertiesTable VARCHAR(255) DEFAULT NULL;
- DECLARE replTbl VARCHAR(255) DEFAULT NULL;
- DECLARE ecount INT DEFAULT 0;
- DECLARE t1 BIGINT DEFAULT 0;
- DECLARE t2 BIGINT DEFAULT 0;
- DECLARE t3 BIGINT DEFAULT 0;
- DECLARE t4 BIGINT DEFAULT 0;
- DECLARE t5 BIGINT DEFAULT 0;
- DECLARE t6 BIGINT DEFAULT 0;
-
-
- IF pname is NOT NULL THEN
- SELECT conv( concat( substring(uid,16,3), substring(uid,10,4), substring(uid,1,8)),16,10) div 10000 - (141427 * 24 * 60 * 60 * 1000) as current_mills INTO t1 from (select uuid() uid) as alias;
- call createTmpTable2(propertiesTable);
-
-
- SET @initPOVPropertiesTableStmt1 = CONCAT('INSERT IGNORE INTO `', propertiesTable, '` (id, id2, domain) SELECT property_id, entity_id, domain_id from name_overrides WHERE name = ? UNION ALL SELECT entity_id, domain_id, 0 FROM name_data WHERE value = ?;');
- PREPARE stmt FROM @initPOVPropertiesTableStmt1;
- SET @pname = pname;
- EXECUTE stmt USING @pname, @pname;
- SET ecount = ROW_COUNT();
-
-
- SELECT conv( concat( substring(uid,16,3), substring(uid,10,4), substring(uid,1,8)),16,10) div 10000 - (141427 * 24 * 60 * 60 * 1000) as current_mills INTO t2 from (select uuid() uid) as alias;
- IF pid IS NOT NULL THEN
- SET @initPOVPropertiesTableStmt2 = CONCAT('INSERT IGNORE INTO `', propertiesTable, '` (id, id2, domain) VALUES (?, 0, 0)');
- PREPARE stmt FROM @initPOVPropertiesTableStmt2;
- SET @pid = pid;
- EXECUTE stmt USING @pid;
- SET ecount = ecount + ROW_COUNT();
- END IF;
-
-
- SELECT conv( concat( substring(uid,16,3), substring(uid,10,4), substring(uid,1,8)),16,10) div 10000 - (141427 * 24 * 60 * 60 * 1000) as current_mills INTO t3 from (select uuid() uid) as alias;
- IF ecount > 0 THEN
-
- call getChildren(propertiesTable, False);
- END IF;
-
-
- SELECT conv( concat( substring(uid,16,3), substring(uid,10,4), substring(uid,1,8)),16,10) div 10000 - (141427 * 24 * 60 * 60 * 1000) as current_mills INTO t4 from (select uuid() uid) as alias;
- IF ecount > 0 THEN
- call createTmpTable2(replTbl);
- SET @replTblStmt1 := CONCAT('INSERT IGNORE INTO `',replTbl, '` (id, id2, domain) SELECT r.value as id, r.entity_id as id2, 0 as domain_id FROM reference_data AS r WHERE status="REPLACEMENT" AND domain_id=0 AND EXISTS (SELECT * FROM `', sourceSet, '` AS s WHERE s.id=r.entity_id) AND EXISTS (SELECT * FROM `', propertiesTable, '` AS p WHERE p.domain = 0 AND p.id2=0 AND p.id=r.property_id);');
- PREPARE replStmt1 FROM @replTblStmt1;
- EXECUTE replStmt1;
- DEALLOCATE PREPARE replStmt1;
- SELECT conv( concat( substring(uid,16,3), substring(uid,10,4), substring(uid,1,8)),16,10) div 10000 - (141427 * 24 * 60 * 60 * 1000) as current_mills INTO t5 from (select uuid() uid) as alias;
-
- SET @replTblStmt2 := CONCAT('INSERT IGNORE INTO `', propertiesTable, '` SELECT id, id2, domain FROM `', replTbl, '`;');
- PREPARE replStmt2 FROM @replTblStmt2;
- EXECUTE replStmt2;
- DEALLOCATE PREPARE replStmt2;
- SELECT conv( concat( substring(uid,16,3), substring(uid,10,4), substring(uid,1,8)),16,10) div 10000 - (141427 * 24 * 60 * 60 * 1000) as current_mills INTO t6 from (select uuid() uid) as alias;
- END IF;
- END IF;
- SELECT propertiesTable, t1, t2, t3, t4, t5, t6, @initPOVPropertiesTableStmt1 as initPOVPropertiesTableStmt1, @initPOVPropertiesTableStmt2 as initPOVPropertiesTableStmt2, @replTblStmt1 as replTblStmt1, @replTblStmt2 as replTblStmt2;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initPOVRefidsTable` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initPOVRefidsTable`(in vInt INT UNSIGNED, in vText VARCHAR(255))
-BEGIN
- DECLARE refIdsTable VARCHAR(255) DEFAULT NULL;
-
-
- IF vText IS NOT NULL THEN
-
- call createTmpTable(refIdsTable, FALSE);
- call initSubEntity(vInt, vText, refIdsTable);
-
- END IF;
- SELECT refIdsTable;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initQuery` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initQuery`(in versioned BOOLEAN)
-BEGIN
- CREATE TEMPORARY TABLE IF NOT EXISTS warnings (warning TEXT NOT NULL);
-
- call createTmpTable(@resultSet, versioned);
- SELECT @resultSet as tablename;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initSubEntity` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initSubEntity`(in e_id INT UNSIGNED, in ename VARCHAR(255), in tableName VARCHAR(255))
-BEGIN
- DECLARE ecount INT DEFAULT 0;
- DECLARE op VARCHAR(255) DEFAULT '=';
-
- IF LOCATE("%", ename) > 0 THEN
- SET op = "LIKE";
- END IF;
-
- SET @stmtStr = CONCAT('INSERT IGNORE INTO `',
- tableName,
- '` (id) SELECT entity_id FROM name_data WHERE value ',
- op,
- ' ? AND domain_id=0;');
-
- PREPARE stmt FROM @stmtStr;
- SET @ename = ename;
- EXECUTE stmt USING @ename;
- SET ecount = ROW_COUNT();
- DEALLOCATE PREPARE stmt;
-
- IF e_id IS NOT NULL THEN
- SET @stmtStr = CONCAT('INSERT IGNORE INTO `', tableName, '` (id) VALUES (', e_id, ')');
- PREPARE stmt FROM @stmtStr;
- EXECUTE stmt;
- SET ecount = ecount + ROW_COUNT();
- DEALLOCATE PREPARE stmt;
- END IF;
-
- IF ecount > 0 THEN
-
- call getChildren(tableName, False);
- END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `initSubProperty` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `initSubProperty`(in sourceSet VARCHAR(255), in propertiesTable VARCHAR(255), in refIdsTable VARCHAR(255))
-BEGIN
-DECLARE newTableName VARCHAR(255) DEFAULT NULL;
- call registerTempTableName(newTableName);
-
- SET @createSubPropertyListTableStr = CONCAT('CREATE TEMPORARY TABLE `', newTableName,'` ( entity_id INT UNSIGNED NOT NULL, id INT UNSIGNED NOT NULL, domain INT UNSIGNED NOT NULL, CONSTRAINT `',newTableName,'PK` PRIMARY KEY (entity_id, id, domain)) ' );
-
- PREPARE createSubPropertyListTable FROM @createSubPropertyListTableStr;
- EXECUTE createSubPropertyListTable;
- DEALLOCATE PREPARE createSubPropertyListTable;
-
- SET @subResultSetStmtStr = CONCAT('INSERT IGNORE INTO `', newTableName, '` (domain, entity_id, id)
- SELECT data1.domain_id as domain, data1.entity_id as entity_id, data1.value as id
- FROM reference_data as data1 JOIN reference_data as data2
- ON (data1.domain_id=0
- AND data1.domain_id=data2.domain_id
- AND data2.entity_id=data1.entity_id
- AND (
- (data1.property_id=data2.value AND data2.status="REPLACEMENT")
- OR
- (data1.property_id!=data2.value AND data2.status!="REPLACEMENT" AND data1.status!="REPLACEMENT" AND data1.property_id=data2.property_id)
- )
- AND EXISTS (SELECT 1 FROM `', sourceSet, '` as source WHERE source.id=data1.entity_id LIMIT 1)',
- IF(propertiesTable IS NULL, '', CONCAT(' AND EXISTS (SELECT 1 FROM `', propertiesTable, '` as props WHERE props.id=data2.property_id LIMIT 1)')),
- IF(refIdsTable IS NULL, '', CONCAT(' AND EXISTS (SELECT 1 FROM `', refIdsTable, '` as refs WHERE refs.id=data1.value LIMIT 1)')),
- ')'
- );
-
-
- PREPARE subResultSetStmt FROM @subResultSetStmtStr;
- EXECUTE subResultSetStmt;
- DEALLOCATE PREPARE subResultSetStmt;
-
- SELECT newTableName as list;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `insertEntity` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `insertEntity`(in EntityName VARCHAR(255), in EntityDesc TEXT, in EntityRole VARCHAR(255), in ACL VARBINARY(65525))
-BEGIN
- DECLARE NewEntityID INT UNSIGNED DEFAULT NULL;
- DECLARE NewACLID INT UNSIGNED DEFAULT NULL;
- DECLARE Hash VARBINARY(255) DEFAULT NULL;
- DECLARE Version VARBINARY(255) DEFAULT NULL;
- DECLARE Transaction VARBINARY(255) DEFAULT NULL;
-
-
-
- call entityACL(NewACLID, ACL);
-
-
- INSERT INTO entities (description, role, acl)
- VALUES (EntityDesc, EntityRole, NewACLID);
-
-
- SET NewEntityID = LAST_INSERT_ID();
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
-
- SET Transaction = @SRID;
- SET Version = SHA1(UUID());
- CALL insert_single_child_version(NewEntityID, Hash, Version, Null, Transaction);
- END IF;
-
-
-
- IF EntityName IS NOT NULL THEN
- INSERT INTO name_data
- (domain_id, entity_id, property_id, value, status, pidx)
- VALUES (0, NewEntityID, 20, EntityName, "FIX", 0);
- END IF;
-
- SELECT NewEntityID as EntityID, Version as Version;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `insertEntityProperty` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `insertEntityProperty`(
- in DomainID INT UNSIGNED,
- in EntityID INT UNSIGNED,
- in PropertyID INT UNSIGNED,
- in Datatable VARCHAR(255),
- in PropertyValue TEXT,
- in PropertyUnitSig BIGINT,
- in PropertyStatus VARCHAR(255),
- in NameOverride VARCHAR(255),
- in DescOverride TEXT,
- in DatatypeOverride INT UNSIGNED,
- in Collection VARCHAR(255),
- in PropertyIndex INT UNSIGNED)
-BEGIN
- DECLARE ReferenceValueIVersion INT UNSIGNED DEFAULT NULL;
- DECLARE ReferenceValue INT UNSIGNED DEFAULT NULL;
- DECLARE AT_PRESENT INTEGER DEFAULT NULL;
-
- CASE Datatable
- WHEN 'double_data' THEN
- INSERT INTO double_data
- (domain_id, entity_id, property_id, value, unit_sig, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, PropertyValue, PropertyUnitSig, PropertyStatus, PropertyIndex);
- WHEN 'integer_data' THEN
- INSERT INTO integer_data
- (domain_id, entity_id, property_id, value, unit_sig, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, PropertyValue, PropertyUnitSig, PropertyStatus, PropertyIndex);
- WHEN 'datetime_data' THEN
- INSERT INTO datetime_data
- (domain_id, entity_id, property_id, value, value_ns, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, SUBSTRING_INDEX(PropertyValue, 'UTC', 1), IF(SUBSTRING_INDEX(PropertyValue, 'UTC', -1)='',NULL,SUBSTRING_INDEX(PropertyValue, 'UTC', -1)), PropertyStatus, PropertyIndex);
- WHEN 'reference_data' THEN
-
-
- SET AT_PRESENT=LOCATE("@", PropertyValue);
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") AND AT_PRESENT > 0 THEN
- SET ReferenceValue = SUBSTRING_INDEX(PropertyValue, '@', 1);
- SET ReferenceValueIVersion = get_iversion(ReferenceValue,
- SUBSTRING_INDEX(PropertyValue, '@', -1));
-
- IF ReferenceValueIVersion IS NULL THEN
- SELECT 0 from `ReferenceValueIVersion_WAS_NULL`;
- END IF;
-
- ELSE
- SET ReferenceValue = PropertyValue;
- END IF;
-
- INSERT INTO reference_data
- (domain_id, entity_id, property_id, value, value_iversion, status,
- pidx)
- VALUES
- (DomainID, EntityID, PropertyID, ReferenceValue,
- ReferenceValueIVersion, PropertyStatus, PropertyIndex);
- WHEN 'enum_data' THEN
- INSERT INTO enum_data
- (domain_id, entity_id, property_id, value, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, PropertyValue, PropertyStatus, PropertyIndex);
- WHEN 'date_data' THEN
- INSERT INTO date_data
- (domain_id, entity_id, property_id, value, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, SUBSTRING_INDEX(PropertyValue, '.', 1), PropertyStatus, PropertyIndex);
- WHEN 'text_data' THEN
- INSERT INTO text_data
- (domain_id, entity_id, property_id, value, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, PropertyValue, PropertyStatus, PropertyIndex);
- WHEN 'null_data' THEN
- INSERT INTO null_data
- (domain_id, entity_id, property_id, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, PropertyStatus, PropertyIndex);
- WHEN 'name_data' THEN
- INSERT INTO name_data
- (domain_id, entity_id, property_id, value, status, pidx)
- VALUES
- (DomainID, EntityID, PropertyID, PropertyValue, PropertyStatus, PropertyIndex);
-
- ELSE
- SELECT * FROM table_does_not_exist;
- END CASE;
-
- IF DatatypeOverride IS NOT NULL THEN
- call overrideType(DomainID, EntityID, PropertyID, DatatypeOverride);
- IF Collection IS NOT NULL THEN
- INSERT INTO collection_type (domain_id, entity_id, property_id, collection) VALUES (DomainID, EntityID, PropertyID, Collection);
- END IF;
- END IF;
-
- IF NameOverride IS NOT NULL THEN
- call overrideName(DomainID, EntityID, PropertyID, NameOverride);
- END IF;
-
- IF DescOverride IS NOT NULL THEN
- call overrideDesc(DomainID, EntityID, PropertyID, DescOverride);
- END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `insertIsa` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `insertIsa`(IN c INT UNSIGNED, IN p INT UNSIGNED)
-insert_is_a_proc: BEGIN
-
- INSERT INTO isa_cache (child, parent, rpath) VALUES (c, p, c);
-
- IF p = c THEN
-
- LEAVE insert_is_a_proc;
- END IF;
-
-
-
-
-
- INSERT IGNORE INTO isa_cache SELECT
- c
- AS child,
- i.parent
- AS parent,
- IF(p=i.rpath or i.rpath=parent,
- p,
- concat(p, ">", i.rpath))
- AS rpath
- FROM isa_cache AS i WHERE i.child = p AND i.child != i.parent;
-
-
-
- INSERT IGNORE INTO isa_cache SELECT
- l.child,
- r.parent,
- if(l.rpath=l.child and r.rpath=c,
- c,
- concat(if(l.rpath=l.child,
- c,
- concat(l.rpath, '>', c)),
- if(r.rpath=c,
- '',
- concat('>', r.rpath))))
- AS rpath
- FROM
- isa_cache as l INNER JOIN isa_cache as r
- ON (l.parent = c AND c = r.child AND l.child != l.parent);
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `insertLinCon` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `insertLinCon`(in signature_from BIGINT, in signature_to BIGINT, in a DECIMAL(65,30), in b_dividend BIGINT, in b_divisor BIGINT, in c DECIMAL(65,30))
-BEGIN
-
- INSERT IGNORE INTO units_lin_con (signature_from, signature_to, a, b_dividend, b_divisor, c) VALUES (signature_from, signature_to, a, b_dividend, b_divisor, c);
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `insertUser` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `insertUser`(in Name VARCHAR(255), in Password VARCHAR(255))
-BEGIN
-
-
-INSERT INTO entities (name, role, acl) VALUES (Name, 'USER', 0);
-
-SET @LAST_UserID = LAST_INSERT_ID();
-
-INSERT INTO passwords VALUES (@LAST_UserID, Password);
-
-Select @LAST_UserID as UserID;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `insert_single_child_version` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `insert_single_child_version`(
- in EntityID INT UNSIGNED,
- in Hash VARBINARY(255),
- in Version VARBINARY(255),
- in Parent VARBINARY(255),
- in Transaction VARBINARY(255))
-BEGIN
- DECLARE newiversion INT UNSIGNED DEFAULT NULL;
- DECLARE newipparent INT UNSIGNED DEFAULT NULL;
-
-
- IF Parent IS NOT NULL THEN
- SELECT e._iversion INTO newipparent
- FROM entity_version AS e
- WHERE e.entity_id = EntityID
- AND e.version = Parent;
- IF newipparent IS NULL THEN
-
- SELECT concat("This parent does not exists: ", Parent)
- FROM nonexisting;
- END IF;
- END IF;
-
-
-
- SELECT max(e._iversion)+1 INTO newiversion
- FROM entity_version AS e
- WHERE e.entity_id=EntityID;
- IF newiversion IS NULL THEN
- SET newiversion = 1;
- END IF;
-
- INSERT INTO entity_version
- (entity_id, hash, version, _iversion, _ipparent, srid)
- VALUES
- (EntityID, Hash, Version, newiversion, newipparent, Transaction);
-
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `intersectTable` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `intersectTable`(in resultSetTable VARCHAR(255), in diff VARCHAR(255))
-BEGIN
- SET @diffStmtStr = CONCAT('DELETE FROM `', resultSetTable, '` WHERE id NOT IN ( SELECT id FROM `', diff,'`)');
- PREPARE diffStmt FROM @diffStmtStr;
- EXECUTE diffStmt;
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `isSubtype` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `isSubtype`(in c INT UNSIGNED, in p INT UNSIGNED)
-BEGIN
- DECLARE ret BOOLEAN DEFAULT FALSE;
- SELECT TRUE INTO ret FROM isa_cache AS i WHERE i.child=c AND i.parent=p LIMIT 1;
- SELECT ret as ISA;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `overrideDesc` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `overrideDesc`(in DomainID INT UNSIGNED, in EntityID INT UNSIGNED, in PropertyID INT UNSIGNED, in Description TEXT)
-BEGIN
- INSERT INTO desc_overrides (domain_id, entity_id, property_id, description) VALUES (DomainID, EntityID, PropertyID, Description);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `overrideName` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `overrideName`(in DomainID INT UNSIGNED, in EntityID INT UNSIGNED, in PropertyID INT UNSIGNED, in Name VARCHAR(255))
-BEGIN
- INSERT INTO name_overrides (domain_id, entity_id, property_id, name) VALUES (DomainID, EntityID, PropertyID, Name);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `overrideType` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `overrideType`(in DomainID INT UNSIGNED, in EntityID INT UNSIGNED, in PropertyID INT UNSIGNED, in Datatype INT UNSIGNED)
-BEGIN
- INSERT INTO data_type (domain_id, entity_id, property_id, datatype) VALUES (DomainID, EntityID, PropertyID, Datatype);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `raiseWarning` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `raiseWarning`(in str VARCHAR(20000))
-BEGIN
- INSERT INTO warnings VALUES (str);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `registerSubdomain` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `registerSubdomain`(in amount INT UNSIGNED)
-BEGIN
- DECLARE ED INTEGER DEFAULT NULL;
-
- SELECT COUNT(id) INTO ED FROM entities WHERE Role='DOMAIN' AND id!=0;
-
- WHILE ED < amount DO
- INSERT INTO entities (description, role, acl) VALUES
- (NULL, 'DOMAIN', 0);
- SET ED = ED + 1;
- END WHILE;
-
- SELECT id as DomainID FROM entities WHERE Role='DOMAIN' and id!=0;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `registerTempTableName` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `registerTempTableName`(out newTableName VARCHAR(255))
-BEGIN
- SET newTableName = md5(CONCAT(RAND(),CURRENT_TIMESTAMP()));
- SET @tempTableList = IF(@tempTableList IS NULL,
- CONCAT('`',newTableName,'`'),
- CONCAT(@tempTableList, ',`', newTableName, '`')
- );
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `reset_stats` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `reset_stats`()
-BEGIN
- truncate table performance_schema.events_statements_summary_by_digest;
- truncate table performance_schema.events_statements_history_long;
- END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `retrieveDatatype` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `retrieveDatatype`(in DatatypeName VARCHAR(255))
-BEGIN
-
-Select e.id INTO @DatatypeID from entities e where e.name=DatatypeName AND e.role='DATATYPE' LIMIT 1;
-
-call retrieveEntity(@DatatypeID);
-
-
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `retrieveEntity` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `retrieveEntity`(
- in EntityID INT UNSIGNED,
- in Version VARBINARY(255))
-retrieveEntityBody: BEGIN
- DECLARE FilePath VARCHAR(255) DEFAULT NULL;
- DECLARE FileSize VARCHAR(255) DEFAULT NULL;
- DECLARE FileHash VARCHAR(255) DEFAULT NULL;
- DECLARE DatatypeID INT UNSIGNED DEFAULT NULL;
- DECLARE CollectionName VARCHAR(255) DEFAULT NULL;
- DECLARE IsHead BOOLEAN DEFAULT TRUE;
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
-
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
-
- IF Version IS NULL OR UPPER(Version) = "HEAD" THEN
- SET Version = get_head_version(EntityID);
- ELSEIF UPPER(LEFT(Version, 5)) = "HEAD~" THEN
- SET IsHead = FALSE;
- SET Version = get_head_relative(EntityID, SUBSTR(Version, 6));
- ELSE
- SELECT get_head_version(EntityID) = Version INTO IsHead;
- END IF;
-
- IF IsHead IS FALSE THEN
- SET IVersion=get_iversion(EntityID, Version);
-
- IF IVersion IS NULL THEN
-
- SELECT 0 FROM entities WHERE 0 = 1;
- LEAVE retrieveEntityBody;
- END IF;
-
- SELECT path, size, HEX(hash)
- INTO FilePath, FileSize, FileHash
- FROM archive_files
- WHERE file_id = EntityID
- AND _iversion = IVersion
- LIMIT 1;
-
- SELECT datatype
- INTO DatatypeID
- FROM archive_data_type
- WHERE domain_id = 0
- AND entity_id = 0
- AND property_id = EntityID
- AND _iversion = IVersion
- LIMIT 1;
-
- SELECT collection
- INTO CollectionName
- FROM archive_collection_type
- WHERE domain_id = 0
- AND entity_id = 0
- AND property_id = EntityID
- AND _iversion = IVersion
- LIMIT 1;
-
-
- SELECT
- ( SELECT value FROM
- ( SELECT value FROM name_data
- WHERE domain_id = 0
- AND entity_ID = DatatypeID
- AND property_id = 20
- UNION SELECT DatatypeID AS value
- ) AS tmp LIMIT 1 ) AS Datatype,
- CollectionName AS Collection,
- EntityID AS EntityID,
- ( SELECT value FROM archive_name_data
- WHERE domain_id = 0
- AND entity_ID = EntityID
- AND property_id = 20
- AND _iversion = IVersion
-
- ) AS EntityName,
- e.description AS EntityDesc,
- e.role AS EntityRole,
- FileSize AS FileSize,
- FilePath AS FilePath,
- FileHash AS FileHash,
- (SELECT acl FROM entity_acl AS a WHERE a.id = e.acl) AS ACL,
- Version AS Version
- FROM archive_entities AS e
- WHERE e.id = EntityID
- AND e._iversion = IVersion
- LIMIT 1;
-
-
- LEAVE retrieveEntityBody;
-
- END IF;
- END IF;
-
- SELECT path, size, hex(hash)
- INTO FilePath, FileSize, FileHash
- FROM files
- WHERE file_id = EntityID
- LIMIT 1;
-
- SELECT datatype INTO DatatypeID
- FROM data_type
- WHERE domain_id=0
- AND entity_id=0
- AND property_id=EntityID
- LIMIT 1;
-
- SELECT collection INTO CollectionName
- FROM collection_type
- WHERE domain_id=0
- AND entity_id=0
- AND property_id=EntityID
- LIMIT 1;
-
- SELECT
- ( SELECT value FROM name_data
- WHERE domain_id = 0
- AND entity_ID = DatatypeID
- AND property_id = 20 LIMIT 1 ) AS Datatype,
- CollectionName AS Collection,
- EntityID AS EntityID,
- ( SELECT value FROM name_data
- WHERE domain_id = 0
- AND entity_ID = EntityID
- AND property_id = 20 LIMIT 1) AS EntityName,
- e.description AS EntityDesc,
- e.role AS EntityRole,
- FileSize AS FileSize,
- FilePath AS FilePath,
- FileHash AS FileHash,
- (SELECT acl FROM entity_acl AS a WHERE a.id = e.acl) AS ACL,
- Version AS Version
- FROM entities e WHERE id = EntityID LIMIT 1;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `retrieveEntityParents` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `retrieveEntityParents`(
- in EntityID INT UNSIGNED,
- in Version VARBINARY(255))
-retrieveEntityParentsBody: BEGIN
-
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
- DECLARE IsHead BOOLEAN DEFAULT TRUE;
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
- IF Version IS NOT NULL THEN
- SELECT get_head_version(EntityID) = Version INTO IsHead;
- END IF;
-
- IF IsHead IS FALSE THEN
- SELECT e._iversion INTO IVersion
- FROM entity_version as e
- WHERE e.entity_id = EntityID
- AND e.version = Version;
-
- IF IVersion IS NULL THEN
-
- LEAVE retrieveEntityParentsBody;
- END IF;
-
- SELECT
- i.parent AS ParentID,
- ( SELECT value FROM name_data
- WHERE domain_id = 0
- AND entity_id = ParentID
- AND property_id = 20
- ) AS ParentName,
-
-
-
-
- e.description AS ParentDescription,
- e.role AS ParentRole,
- (SELECT acl FROM entity_acl AS a WHERE a.id = e.acl) AS ACL
- FROM archive_isa AS i JOIN entities AS e
- ON (i.parent = e.id)
- WHERE i.child = EntityID
- AND i.child_iversion = IVersion
- AND i.direct IS TRUE
- ;
-
- LEAVE retrieveEntityParentsBody;
- END IF;
- END IF;
-
- SELECT
- i.parent AS ParentID,
- ( SELECT value FROM name_data
- WHERE domain_id = 0
- AND entity_id = ParentID
- AND property_id = 20 ) AS ParentName,
- e.description AS ParentDescription,
- e.role AS ParentRole,
- (SELECT acl FROM entity_acl AS a WHERE a.id = e.acl) AS ACL
- FROM isa_cache AS i JOIN entities AS e
- ON (i.parent = e.id)
- WHERE i.child = EntityID
- AND i.rpath = EntityID;
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `retrieveEntityProperties` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `retrieveEntityProperties`(
- in DomainID INT UNSIGNED,
- in EntityID INT UNSIGNED,
- in Version VARBINARY(255))
-retrieveEntityPropertiesBody: BEGIN
-
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
- DECLARE IsHead BOOLEAN DEFAULT TRUE;
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
- IF Version IS NOT NULL THEN
- IF DomainID = 0 THEN
- SELECT get_head_version(EntityID) = Version INTO IsHead;
- ELSE
- SELECT get_head_version(DomainID) = Version INTO IsHead;
- END IF;
-
- END IF;
-
- IF IsHead IS FALSE THEN
- SELECT e._iversion INTO IVersion
- FROM entity_version as e
- WHERE ((e.entity_id = EntityID AND DomainID = 0)
- OR (e.entity_id = DomainID))
- AND e.version = Version;
-
- IF IVersion IS NULL THEN
-
- LEAVE retrieveEntityPropertiesBody;
- END IF;
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_double_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_integer_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- CONCAT(value, '.NULL.NULL') AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_date_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- CONCAT(value, 'UTC', IF(value_ns IS NULL, '', value_ns))
- AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_datetime_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_text_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_enum_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- IF(value_iversion IS NULL, value,
-
- CONCAT(value, "@", _get_version(value, value_iversion)))
- AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_reference_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- NULL AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_null_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM archive_name_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND property_id != 20
- AND _iversion = IVersion;
-
- LEAVE retrieveEntityPropertiesBody;
- END IF;
- END IF;
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM double_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM integer_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- CONCAT(value, '.NULL.NULL') AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM date_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- CONCAT(value, 'UTC', IF(value_ns IS NULL, '', value_ns))
- AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM datetime_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM text_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM enum_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- IF(value_iversion IS NULL, value,
- CONCAT(value, "@", _get_version(value, value_iversion)))
- AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM reference_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- NULL AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM null_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
-
- SELECT
- property_id AS PropertyID,
- value AS PropertyValue,
- status AS PropertyStatus,
- pidx AS PropertyIndex
- FROM name_data
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND property_id != 20;
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `retrieveOverrides` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `retrieveOverrides`(
- in DomainID INT UNSIGNED,
- in EntityID INT UNSIGNED,
- in Version VARBINARY(255))
-retrieveOverridesBody: BEGIN
-
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
- DECLARE IsHead BOOLEAN DEFAULT TRUE;
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
- IF Version IS NOT NULL THEN
- IF DomainID = 0 THEN
- SELECT get_head_version(EntityID) = Version INTO IsHead;
- ELSE
- SELECT get_head_version(DomainID) = Version INTO IsHead;
- END IF;
- END IF;
-
- IF IsHead IS FALSE THEN
- SELECT e._iversion INTO IVersion
- FROM entity_version as e
- WHERE ((e.entity_id = EntityID AND DomainID = 0)
- OR (e.entity_id = DomainID))
- AND e.version = Version;
-
- IF IVersion IS NULL THEN
-
- LEAVE retrieveOverridesBody;
- END IF;
-
-
- SELECT
- NULL AS collection_override,
- name AS name_override,
- NULL AS desc_override,
- NULL AS type_override,
- entity_id,
- property_id
- FROM archive_name_overrides
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- NULL AS collection_override,
- NULL AS name_override,
- description AS desc_override,
- NULL AS type_override,
- entity_id,
- property_id
- FROM archive_desc_overrides
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- NULL AS collection_override,
- NULL AS name_override,
- NULL AS desc_override,
- IFNULL((SELECT value FROM name_data
- WHERE domain_id = 0
- AND entity_id = datatype
- AND property_id = 20
- LIMIT 1), datatype) AS type_override,
- entity_id,
- property_id
- FROM archive_data_type
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion
-
- UNION ALL
-
-
- SELECT
- collection AS collection_override,
- NULL AS name_override,
- NULL AS desc_override,
- NULL AS type_override,
- entity_id,
- property_id
- FROM archive_collection_type
- WHERE domain_id = DomainID
- AND entity_id = EntityID
- AND _iversion = IVersion;
-
- LEAVE retrieveOverridesBody;
- END IF;
- END IF;
-
- SELECT
- NULL AS collection_override,
- name AS name_override,
- NULL AS desc_override,
- NULL AS type_override,
- entity_id,
- property_id
- FROM name_overrides
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
- SELECT
- NULL AS collection_override,
- NULL AS name_override,
- description AS desc_override,
- NULL AS type_override,
- entity_id,
- property_id
- FROM desc_overrides
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
- SELECT
- NULL AS collection_override,
- NULL AS name_override,
- NULL AS desc_override,
- IFNULL((SELECT value FROM name_data
- WHERE domain_id = 0
- AND entity_ID = datatype
- AND property_id = 20 LIMIT 1), datatype) AS type_override,
- entity_id,
- property_id
- FROM data_type
- WHERE domain_id = DomainID
- AND entity_id = EntityID
-
- UNION ALL
-
- SELECT
- collection AS collection_override,
- NULL AS name_override,
- NULL AS desc_override,
- NULL AS type_override,
- entity_id,
- property_id
- FROM collection_type
- WHERE domain_id = DomainID
- AND entity_id = EntityID;
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `retrieveQueryTemplateDef` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `retrieveQueryTemplateDef`(
- in EntityID INT UNSIGNED,
- in Version VARBINARY(255))
-retrieveQueryTemplateDefBody: BEGIN
-
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
- DECLARE IsHead BOOLEAN DEFAULT TRUE;
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
-
- IF Version IS NOT NULL THEN
- SELECT get_head_version(EntityID) = Version INTO IsHead;
- END IF;
-
- IF IsHead IS FALSE THEN
-
- SELECT e._iversion INTO IVersion
- FROM entity_version as e
- WHERE e.entity_id = EntityID
- AND e.version = Version;
-
- IF IVersion IS NULL THEN
-
- LEAVE retrieveQueryTemplateDefBody;
- END IF;
-
- SELECT definition
- FROM archive_query_template_def
- WHERE id = EntityID
- AND _iversion = IVersion;
-
- LEAVE retrieveQueryTemplateDefBody;
- END IF;
- END IF;
-
- SELECT definition
- FROM query_template_def
- WHERE id = EntityID;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `setFileProperties` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `setFileProperties`(
- in EntityID INT UNSIGNED,
- in FilePath TEXT,
- in FileSize BIGINT UNSIGNED,
- in FileHash VARCHAR(255)
-)
-BEGIN
- DECLARE IVersion INT UNSIGNED DEFAULT NULL;
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
- SELECT max(e._iversion) INTO IVersion
- FROM entity_version AS e
- WHERE e.entity_id = EntityID;
-
- INSERT INTO archive_files (file_id, path, size, hash,
- _iversion)
- SELECT file_id, path, size, hash, IVersion AS _iversion
- FROM files
- WHERE file_id = EntityID;
- END IF;
-
- DELETE FROM files WHERE file_id = EntityID;
-
- IF FilePath IS NOT NULL THEN
- INSERT INTO files (file_id, path, size, hash)
- VALUES (EntityID, FilePath, FileSize, unhex(FileHash));
- END IF;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `setPassword` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `setPassword`(in EntityID INT UNSIGNED, in NewPassword VARCHAR(255))
-BEGIN
-
-
- DELETE FROM passwords where entity_id=EntityID;
- INSERT INTO passwords (entity_id, password) VALUES (EntityID, NewPassword);
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `set_transaction` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `set_transaction`(
- srid VARBINARY(255),
- username VARCHAR(255),
- realm VARCHAR(255),
- seconds BIGINT UNSIGNED,
- nanos INT(10) UNSIGNED)
-BEGIN
-
- SET @SRID = srid;
- INSERT INTO transactions (srid, username, realm, seconds, nanos)
- VALUES (srid, username, realm, seconds, nanos);
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `showEntityAutoIncr` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `showEntityAutoIncr`()
-BEGIN
-SELECT `AUTO_INCREMENT`
-FROM INFORMATION_SCHEMA.TABLES
-WHERE TABLE_SCHEMA = 'caosdb'
-AND TABLE_NAME = 'entities';
-
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `updateEntity` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `updateEntity`(
- in EntityID INT UNSIGNED,
- in EntityName VARCHAR(255),
- in EntityDescription TEXT,
- in EntityRole VARCHAR(255),
- in Datatype VARCHAR(255),
- in Collection VARCHAR(255),
- in ACL VARBINARY(65525))
-BEGIN
- DECLARE ACLID INT UNSIGNED DEFAULT NULL;
- DECLARE Hash VARBINARY(255) DEFAULT NULL;
- DECLARE Version VARBINARY(255) DEFAULT SHA1(UUID());
- DECLARE ParentVersion VARBINARY(255) DEFAULT NULL;
- DECLARE Transaction VARBINARY(255) DEFAULT NULL;
- DECLARE OldIVersion INT UNSIGNED DEFAULT NULL;
-
- call entityACL(ACLID, ACL);
-
- IF is_feature_config("ENTITY_VERSIONING", "ENABLED") THEN
- SELECT max(_iversion) INTO OldIVersion
- FROM entity_version
- WHERE entity_id = EntityID;
-
-
- INSERT INTO archive_entities (id, description, role,
- acl, _iversion)
- SELECT e.id, e.description, e.role, e.acl, OldIVersion
- FROM entities AS e
- WHERE e.id = EntityID;
-
- INSERT INTO archive_data_type (domain_id, entity_id, property_id,
- datatype, _iversion)
- SELECT e.domain_id, e.entity_id, e.property_id, e.datatype,
- OldIVersion
- FROM data_type AS e
- WHERE e.domain_id = 0
- AND e.entity_id = 0
- AND e.property_id = EntityID;
-
- INSERT INTO archive_collection_type (domain_id, entity_id, property_id,
- collection, _iversion)
- SELECT e.domain_id, e.entity_id, e.property_id, e.collection,
- OldIVersion
- FROM collection_type as e
- WHERE e.domain_id = 0
- AND e.entity_id = 0
- AND e.property_id = EntityID;
-
-
- SET Transaction = @SRID;
- SELECT e.version INTO ParentVersion
- FROM entity_version as e
- WHERE e.entity_id = EntityID
- AND e._iversion = OldIVersion;
- CALL insert_single_child_version(
- EntityID, Hash, Version,
- ParentVersion, Transaction);
- END IF;
-
- UPDATE entities e
- SET e.description = EntityDescription,
- e.role=EntityRole,
- e.acl = ACLID
- WHERE e.id = EntityID;
-
-
-
- DELETE FROM name_data
- WHERE domain_id = 0 AND entity_id = EntityID AND property_id = 20;
- IF EntityName IS NOT NULL THEN
- INSERT INTO name_data
- (domain_id, entity_id, property_id, value, status, pidx)
- VALUES (0, EntityID, 20, EntityName, "FIX", 0);
- END IF;
-
- DELETE FROM data_type
- WHERE domain_id=0 AND entity_id=0 AND property_id=EntityID;
-
- DELETE FROM collection_type
- WHERE domain_id=0 AND entity_id=0 AND property_id=EntityID;
-
- IF Datatype IS NOT NULL THEN
- INSERT INTO data_type (domain_id, entity_id, property_id, datatype)
- SELECT 0, 0, EntityID,
- ( SELECT entity_id FROM name_data WHERE domain_id = 0
- AND property_id = 20 AND value = Datatype LIMIT 1 );
-
- IF Collection IS NOT NULL THEN
- INSERT INTO collection_type (domain_id, entity_id, property_id,
- collection)
- SELECT 0, 0, EntityID, Collection;
- END IF;
- END IF;
-
- Select Version as Version;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!50003 DROP PROCEDURE IF EXISTS `updateLinCon` */;
-/*!50003 SET @saved_cs_client = @@character_set_client */ ;
-/*!50003 SET @saved_cs_results = @@character_set_results */ ;
-/*!50003 SET @saved_col_connection = @@collation_connection */ ;
-/*!50003 SET character_set_client = utf8 */ ;
-/*!50003 SET character_set_results = utf8 */ ;
-/*!50003 SET collation_connection = utf8_general_ci */ ;
-/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
-/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
-DELIMITER ;;
-CREATE DEFINER=`caosdb`@`%` PROCEDURE `updateLinCon`(in sig_from BIGINT, in sig_to BIGINT, in new_a DECIMAL(65,30), in new_b_dividend BIGINT, in new_b_divisor BIGINT, in new_c DECIMAL(65,30))
-BEGIN
- UPDATE units_lin_con SET signature_to=sig_to, a=new_a, b_dividend=new_b_dividend, b_divisor=new_b_divisor, c=new_c where signature_from=sig_from;
-
-END ;;
-DELIMITER ;
-/*!50003 SET sql_mode = @saved_sql_mode */ ;
-/*!50003 SET character_set_client = @saved_cs_client */ ;
-/*!50003 SET character_set_results = @saved_cs_results */ ;
-/*!50003 SET collation_connection = @saved_col_connection */ ;
-/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */;
-
-/*!40101 SET SQL_MODE=@OLD_SQL_MODE */;
-/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */;
-/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */;
-/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */;
-/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */;
-/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */;
-/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;
-
--- Dump completed on 2022-01-20 8:27:49
diff --git a/integrationtests/test-profile/custom/other/restore/caosroot.2022-01-20T09271642667269.tar.gz b/integrationtests/test-profile/custom/other/restore/caosroot.2022-01-20T09271642667269.tar.gz
deleted file mode 100644
index 4f6809d8067ecf58fd449567a8339fc3f498e651..0000000000000000000000000000000000000000
Binary files a/integrationtests/test-profile/custom/other/restore/caosroot.2022-01-20T09271642667269.tar.gz and /dev/null differ
diff --git a/integrationtests/test_data/extroot/realworld_example/data/35/03_raw_data/001_dataset1/metadata.json b/integrationtests/test_data/extroot/realworld_example/data/35/03_raw_data/001_dataset1/metadata.json
index 64df90e55eff065b1cc249a634444a72f9fd00d2..9b81cc094bf7d1c35154d8f092a96d5f5fae35c9 100644
--- a/integrationtests/test_data/extroot/realworld_example/data/35/03_raw_data/001_dataset1/metadata.json
+++ b/integrationtests/test_data/extroot/realworld_example/data/35/03_raw_data/001_dataset1/metadata.json
@@ -1,5 +1,5 @@
{
- "title": "Random numbers created on a random autumn day in a random office",
+ "title": "Random numbers created on a random autumn day in a random person's office",
"abstract": "For demonstration purposes we created random numbers on a computer in an office of the CLOUD. This demonstration dataset is used in the DataCloud, a curated cloud storage for scientific data.",
"Event": [
{
diff --git a/integrationtests/test_data/extroot/use_case_simple_presentation/cfood.yml b/integrationtests/test_data/extroot/use_case_simple_presentation/cfood.yml
index 0b17073a823269c9eebbf53df6b9002ac8dbd45f..6495e1828dc56e99459c162f7751951f880ea55c 100644
--- a/integrationtests/test_data/extroot/use_case_simple_presentation/cfood.yml
+++ b/integrationtests/test_data/extroot/use_case_simple_presentation/cfood.yml
@@ -22,7 +22,8 @@ extroot:
records:
mdfile:
- parents: []
+ parents:
+ - mdfile
role: File
path: $DataFile
file: $DataFile
@@ -64,7 +65,8 @@ extroot:
records:
mdfile:
- parents: []
+ parents:
+ - mdfile
role: File
path: $DataFile
file: $DataFile
diff --git a/integrationtests/test_data/extroot/use_case_simple_presentation/model.yml b/integrationtests/test_data/extroot/use_case_simple_presentation/model.yml
index b1dcbd487b56519553a873fdd252c93ce21402a1..bcf041c9586841ef9c61b9aef62574985c2be471 100644
--- a/integrationtests/test_data/extroot/use_case_simple_presentation/model.yml
+++ b/integrationtests/test_data/extroot/use_case_simple_presentation/model.yml
@@ -17,7 +17,6 @@ ScientificActivity:
datatype: TEXT
mdfile:
description: The file storing information about this record.
- datatype: FILE
Experiment:
description: |
diff --git a/integrationtests/test_realworld_example.py b/integrationtests/test_realworld_example.py
index 19a9aca2eaabce59b9570ade9ad7bae6eb43f9b9..da3fb69ce635ae69cd33cbf01de9df8ebf019661 100644
--- a/integrationtests/test_realworld_example.py
+++ b/integrationtests/test_realworld_example.py
@@ -124,7 +124,7 @@ def test_dataset(clear_database, usemodel):
" given_name='Max'", unique=True)
dataset = db.execute_query(f"FIND RECORD Dataset with Dataspace={dataspace.id} AND title="
- "'Random numbers created on a random autumn day in a random office'"
+ "'Random numbers created on a random autumn day in a random person\\'s office'"
"", unique=True)
assert db.execute_query(f"COUNT RECORD with id={dataset.id} AND WHICH REFERENCES Person WITH full_name="
"'Alexa Nozone' AND WHICH REFERENCES Person WITH full_name='Max Schmitt'"
diff --git a/integrationtests/test_use_case_simple_presentation.py b/integrationtests/test_use_case_simple_presentation.py
index bf16ef3be7179372ace7d05d67ffee33890fcc3c..1d611ba4b002aa4c5b31f6f6a2862985c9d4298f 100644
--- a/integrationtests/test_use_case_simple_presentation.py
+++ b/integrationtests/test_use_case_simple_presentation.py
@@ -34,14 +34,15 @@ from caosadvancedtools.loadFiles import loadpath
from caosadvancedtools.models import parser as parser
from caoscrawler.crawl import crawler_main
-
-# TODO(fspreck) Re-eneable once this is part of dev in advancedusertools.
-# from caosadvancedtools.testutils import clear_database, set_test_key
+# TODO: wait for release of this feature in pylib
+# from caosdb.utils.register_tests import clear_database, set_test_key
# set_test_key("10b128cf8a1372f30aa3697466bb55e76974e0c16a599bb44ace88f19c8f61e2")
DATADIR = os.path.join(os.path.dirname(__file__), "test_data",
"extroot", "use_case_simple_presentation")
+# TODO: remove this
+
@pytest.fixture
def clear_database():
diff --git a/release.sh b/release.sh
new file mode 100755
index 0000000000000000000000000000000000000000..1af097f014de6cd9eb3d3e8ba5da34aea0fe1671
--- /dev/null
+++ b/release.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+rm -rf dist/ build/ .eggs/
+python setup.py sdist bdist_wheel
+python -m twine upload -s dist/*
diff --git a/setup.cfg b/setup.cfg
index 0351d56dec59ee0b33c10be1f825e5d1d04f8504..3a9ad9b613380831eaae0cd3502e3a8ed4f22e5a 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,6 +1,6 @@
[metadata]
name = caoscrawler
-version = 0.1
+version = 0.1.1
author = Alexander Schlemmer
author_email = alexander.schlemmer@ds.mpg.de
description = A new crawler for caosdb
@@ -10,19 +10,19 @@ long_description_content_type = text/markdown
# project_urls
classifiers =
Programming Language :: Python :: 3
- License :: OSI Approved :: AGPLv3
+ License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
Operating System :: OS Independent
[options]
package_dir =
= src
packages = find:
-python_requires = >=3.6
+python_requires = >=3.8
install_requires =
importlib-resources
caosdb
- caosadvancedtools
- yaml-header-tools>=0.2.1
+ caosadvancedtools >= 0.6.0
+ yaml-header-tools >= 0.2.1
pyyaml
odfpy #make optional
pandas
diff --git a/src/caoscrawler/converters.py b/src/caoscrawler/converters.py
index 9ea37a546d5be0085becc7ff251f01f345f5291f..027944149914fa25b815b96725ca8b62d6bc5e20 100644
--- a/src/caoscrawler/converters.py
+++ b/src/caoscrawler/converters.py
@@ -156,15 +156,21 @@ def handle_value(value: Union[dict, str, list], values: GeneralStore):
propvalue = value
# variables replacement:
- propvalue = [replace_variables(i, values) for i in propvalue]
+ propvalue = list()
+ for element in value:
+ # Do the element-wise replacement only, when its type is string:
+ if type(element) == str:
+ propvalue.append(replace_variables(element, values))
+ else:
+ propvalue.append(element)
return (propvalue, collection_mode)
else:
# value is another simple type
- # collection_mode = "single"
- # propvalue = value["value"]
- # return (propvalue, collection_mode)
- raise RuntimeError()
+ collection_mode = "single"
+ propvalue = value
+ # Return it immediately, otherwise variable substitution would be done and fail:
+ return (propvalue, collection_mode)
propvalue = replace_variables(propvalue, values)
return (propvalue, collection_mode)
@@ -212,15 +218,15 @@ def create_records(values: GeneralStore,
keys_modified.append((name, key))
propvalue, collection_mode = handle_value(value, values)
- if key in SPECIAL_PROPERTIES:
+ if key.lower() in SPECIAL_PROPERTIES:
# e.g. description, name, etc.
# list mode does not work for them
- if key == "path" and not propvalue.startswith(os.path.sep):
+ if key.lower() == "path" and not propvalue.startswith(os.path.sep):
propvalue = os.path.sep + propvalue
# Convert relative to absolute paths:
propvalue = os.path.normpath(propvalue)
- setattr(c_record, key, propvalue)
+ setattr(c_record, key.lower(), propvalue)
else:
if c_record.get_property(key) is None:
diff --git a/src/caoscrawler/crawl.py b/src/caoscrawler/crawl.py
index 7c58656d99efe06e5713571260535e8da52fbc3d..b4c9c9ffeedfb0eaf82860b07afe695215ece04d 100644
--- a/src/caoscrawler/crawl.py
+++ b/src/caoscrawler/crawl.py
@@ -55,12 +55,17 @@ from caosdb.apiutils import compare_entities, merge_entities
from copy import deepcopy
from jsonschema import validate
-logger = logging.getLogger(__name__)
+from .macros import defmacro_constructor, macro_constructor
+logger = logging.getLogger(__name__)
SPECIAL_PROPERTIES_STRICT = ("description", "name", "id", "path")
SPECIAL_PROPERTIES_NOT_STRICT = ("file", "checksum", "size")
+# Register the macro functions from the submodule:
+yaml.SafeLoader.add_constructor("!defmacro", defmacro_constructor)
+yaml.SafeLoader.add_constructor("!macro", macro_constructor)
+
def check_identical(record1: db.Entity, record2: db.Entity, ignore_id=False):
"""
@@ -160,7 +165,6 @@ class Crawler(object):
"""
def __init__(self,
- converters: List[Converter] = [],
generalStore: Optional[GeneralStore] = None,
debug: bool = False,
identifiableAdapter: IdentifiableAdapter = None,
@@ -171,15 +175,14 @@ class Crawler(object):
Parameters
----------
- converters : List[Converter]
- The set of converters used for this crawler.
recordStore : GeneralStore
An initial GeneralStore which might store e.g. environment variables.
debug : bool
Create a debugging information tree when set to True.
The debugging information tree is a variable stored in
self.debug_tree. It is a dictionary mapping directory entries
- to a tuple of general stores and record stores which are valid for the directory scope.
+ to a tuple of general stores and record stores which are valid for
+ the directory scope.
Furthermore, it is stored in a second tree named self.debug_copied whether the
objects in debug_tree had been copied from a higher level in the hierarchy
of the structureelements.
@@ -191,7 +194,6 @@ class Crawler(object):
"""
# TODO: check if this feature is really needed
- self.global_converters = converters
self.identified_cache = IdentifiedCache()
self.recordStore = RecordStore()
@@ -225,7 +227,29 @@ class Crawler(object):
# Load the cfood from a yaml file:
with open(crawler_definition_path, "r") as f:
- crawler_definition = yaml.safe_load(f)
+ crawler_definitions = list(yaml.safe_load_all(f))
+
+ crawler_definition = self._load_definition_from_yaml_dict(
+ crawler_definitions)
+
+ return self._resolve_validator_paths(crawler_definition, crawler_definition_path)
+
+ def _load_definition_from_yaml_dict(self, crawler_definitions: List[Dict]):
+ """Load crawler definitions from a list of (yaml) dicts `crawler_definitions` which
+ contains either one or two documents.
+
+ Doesn't resolve the validator paths in the cfood definition, so for
+ internal and testing use only.
+
+ """
+ if len(crawler_definitions) == 1:
+ # Simple case, just one document:
+ crawler_definition = crawler_definitions[0]
+ elif len(crawler_definitions) == 2:
+ crawler_definition = crawler_definitions[1]
+ else:
+ raise RuntimeError(
+ "Crawler definition must not contain more than two documents.")
# TODO: at this point this function can already load the cfood schema extensions
# from the crawler definition and add them to the yaml schema that will be
@@ -240,11 +264,16 @@ class Crawler(object):
for key in crawler_definition["Converters"]:
schema["cfood"]["$defs"]["converter"]["properties"]["type"]["enum"].append(
key)
+ if len(crawler_definitions) == 2:
+ if "Converters" in crawler_definitions[0]["metadata"]:
+ for key in crawler_definitions[0]["metadata"]["Converters"]:
+ schema["cfood"]["$defs"]["converter"]["properties"]["type"]["enum"].append(
+ key)
# Validate the cfood schema:
validate(instance=crawler_definition, schema=schema["cfood"])
- return self._resolve_validator_paths(crawler_definition, crawler_definition_path)
+ return crawler_definition
def _resolve_validator_paths(self, definition: dict, definition_path: str):
"""Resolve path to validation files with respect to the file in which
@@ -429,15 +458,15 @@ class Crawler(object):
items = [items]
self.run_id = uuid.uuid1()
- local_converters = Crawler.initialize_converters(crawler_definition, converter_registry)
+ local_converters = Crawler.initialize_converters(
+ crawler_definition, converter_registry)
# This recursive crawling procedure generates the update list:
self.target_data: List[db.Record] = []
- self._crawl(items,
- self.global_converters, local_converters, self.generalStore, self.recordStore,
- [], [])
+ self._crawl(items, local_converters, self.generalStore,
+ self.recordStore, [], [])
if self.debug:
- self.debug_converters = self.global_converters + local_converters
+ self.debug_converters = local_converters
return self.target_data
@@ -764,10 +793,56 @@ class Crawler(object):
else:
pass
+ @staticmethod
+ def execute_parent_updates_in_list(to_be_updated, securityMode, run_id, unique_names):
+ """
+ Execute the updates of changed parents.
+
+ This method is used before the standard inserts and needed
+ because some changes in parents (e.g. of Files) might fail
+ if they are not updated first.
+ """
+ Crawler.set_ids_and_datatype_of_parents_and_properties(to_be_updated)
+ parent_updates = db.Container()
+
+ for record in to_be_updated:
+ old_entity = Crawler._get_entity_by_id(record.id)
+
+ # Check whether the parents have been changed and add them if missing
+ # in the old entity:
+ changes_made = False
+ for parent in record.parents:
+ found = False
+ for old_parent in old_entity.parents:
+ if old_parent.id == parent.id:
+ found = True
+ break
+ if not found:
+ old_entity.add_parent(id=parent.id)
+ changes_made = True
+ if changes_made:
+ parent_updates.append(old_entity)
+ logger.debug("RecordTypes need to be added to the following entities:")
+ logger.debug(parent_updates)
+ if len(parent_updates) > 0:
+ if securityMode.value > SecurityMode.INSERT.value:
+ parent_updates.update(unique=False)
+ elif run_id is not None:
+ update_cache = UpdateCache()
+ update_cache.insert(parent_updates, run_id)
+ logger.info("Some entities need to be updated because they are missing a parent "
+ "RecordType. The update was NOT executed due to the chosen security "
+ "mode. This might lead to a failure of inserts that follow.")
+ logger.info(parent_updates)
+
@staticmethod
def _get_entity_by_name(name):
return db.Entity(name=name).retrieve()
+ @staticmethod
+ def _get_entity_by_id(id):
+ return db.Entity(id=id).retrieve()
+
@staticmethod
def execute_inserts_in_list(to_be_inserted, securityMode, run_id: int = None,
unique_names=True):
@@ -845,6 +920,8 @@ class Crawler(object):
self.remove_unnecessary_updates(to_be_updated, identified_records)
if commit_changes:
+ self.execute_parent_updates_in_list(to_be_updated, securityMode=self.securityMode,
+ run_id=self.run_id, unique_names=unique_names)
self.execute_inserts_in_list(
to_be_inserted, self.securityMode, self.run_id, unique_names=unique_names)
self.execute_updates_in_list(
@@ -931,7 +1008,6 @@ ____________________\n""".format(i + 1, len(pending_changes)) + str(el[3]))
f.write(yaml.dump(paths, sort_keys=False))
def _crawl(self, items: List[StructureElement],
- global_converters: List[Converter],
local_converters: List[Converter],
generalStore: GeneralStore,
recordStore: RecordStore,
@@ -940,7 +1016,7 @@ ____________________\n""".format(i + 1, len(pending_changes)) + str(el[3]))
Crawl a list of StructureElements and apply any matching converters.
items: structure_elements (e.g. files and folders on one level on the hierarchy)
- global_converters and local_converters: globally or locally defined converters for
+ local_converters: locally defined converters for
treating structure elements. A locally defined converter could be
one that is only valid for a specific subtree of the originally
cralwed StructureElement structure.
@@ -948,7 +1024,8 @@ ____________________\n""".format(i + 1, len(pending_changes)) + str(el[3]))
global stores of the Crawler object.
"""
for element in items:
- for converter in global_converters + local_converters:
+ for converter in local_converters:
+
# type is something like "matches files", replace isinstance with "type_matches"
# match function tests regexp for example
if (converter.typecheck(element) and
@@ -974,7 +1051,8 @@ ____________________\n""".format(i + 1, len(pending_changes)) + str(el[3]))
self.debug_tree[str(element)] = (
generalStore_copy.get_storage(), recordStore_copy.get_storage())
self.debug_metadata["copied"][str(element)] = (
- generalStore_copy.get_dict_copied(), recordStore_copy.get_dict_copied())
+ generalStore_copy.get_dict_copied(),
+ recordStore_copy.get_dict_copied())
self.debug_metadata["usage"][str(element)].add(
"/".join(converters_path + [converter.name]))
mod_info = self.debug_metadata["provenance"]
@@ -985,10 +1063,11 @@ ____________________\n""".format(i + 1, len(pending_changes)) + str(el[3]))
record_identifier = record_name + \
"_" + str(internal_id)
converter.metadata["usage"].add(record_identifier)
- mod_info[record_identifier][prop_name] = (structure_elements_path + [element.get_name()],
- converters_path + [converter.name])
+ mod_info[record_identifier][prop_name] = (
+ structure_elements_path + [element.get_name()],
+ converters_path + [converter.name])
- self._crawl(children, global_converters, converter.converters,
+ self._crawl(children, converter.converters,
generalStore_copy, recordStore_copy,
structure_elements_path + [element.get_name()],
converters_path + [converter.name])
@@ -1076,6 +1155,9 @@ def crawler_main(crawled_directory_path: str,
if isinstance(elem, db.File):
# correct the file path:
# elem.file = os.path.join(args.path, elem.file)
+ if prefix is None:
+ raise RuntimeError(
+ "No prefix set. Prefix must be set if files are used.")
if elem.path.startswith(prefix):
elem.path = elem.path[len(prefix):]
elem.file = None
diff --git a/src/caoscrawler/identifiable_adapters.py b/src/caoscrawler/identifiable_adapters.py
index 0b00cbeaefe42bcf600db735d27c67571ca6a79b..d4c2b1d04316946dc28fec15489e0dc390cb9dd3 100644
--- a/src/caoscrawler/identifiable_adapters.py
+++ b/src/caoscrawler/identifiable_adapters.py
@@ -52,8 +52,11 @@ def convert_value(value):
return str(value.id)
elif isinstance(value, datetime):
return value.isoformat()
+ elif type(value) == str:
+ # replace single quotes, otherwise they may break the queries
+ return value.replace("\'", "\\'")
else:
- return str(value)
+ return f"{value}"
class IdentifiableAdapter(metaclass=ABCMeta):
@@ -387,7 +390,8 @@ class LocalStorageIdentifiableAdapter(IdentifiableAdapter):
if self.check_record(record, identifiable):
candidates.append(record)
if len(candidates) > 1:
- raise RuntimeError("Identifiable was not defined unambigiously.")
+ raise RuntimeError(
+ f"Identifiable was not defined unambigiously. Possible candidates are {candidates}")
if len(candidates) == 0:
return None
return candidates[0]
@@ -469,7 +473,8 @@ class CaosDBIdentifiableAdapter(IdentifiableAdapter):
query_string = self.create_query_for_identifiable(identifiable)
candidates = db.execute_query(query_string)
if len(candidates) > 1:
- raise RuntimeError("Identifiable was not defined unambigiously.")
+ raise RuntimeError(
+ f"Identifiable was not defined unambigiously.\n{query_string}\nReturned the following {candidates}.")
if len(candidates) == 0:
return None
return candidates[0]
diff --git a/src/caoscrawler/macros/__init__.py b/src/caoscrawler/macros/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..0acfb1763039a3bb800bbf0e26d6940b49d045cf
--- /dev/null
+++ b/src/caoscrawler/macros/__init__.py
@@ -0,0 +1 @@
+from .macro_yaml_object import defmacro_constructor, macro_constructor
diff --git a/src/caoscrawler/macros/macro_yaml_object.py b/src/caoscrawler/macros/macro_yaml_object.py
new file mode 100644
index 0000000000000000000000000000000000000000..2849986e6deb5cb2cba9e45516e6ce8e1a93dfa0
--- /dev/null
+++ b/src/caoscrawler/macros/macro_yaml_object.py
@@ -0,0 +1,155 @@
+#!/usr/bin/env python3
+# encoding: utf-8
+#
+# ** header v3.0
+# This file is a part of the CaosDB Project.
+#
+# Copyright (C) 2022 Alexander Schlemmer
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as
+# published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU Affero General Public License for more details.
+#
+# You should have received a copy of the GNU Affero General Public License
+# along with this program. If not, see <https://www.gnu.org/licenses/>.
+#
+# ** end header
+#
+
+# Function to expand a macro in yaml
+# A. Schlemmer, 05/2022
+
+from dataclasses import dataclass
+from typing import Any, Dict
+from copy import deepcopy
+from string import Template
+
+
+@dataclass
+class MacroDefinition:
+ """
+ Stores a macro definition.
+ name: Name of the macro
+ params: variables and default values to be substituted in keys or values
+ definition: A dictionary that will be substituted including parameters
+ """
+ name: str
+ params: Dict[str, Any]
+ definition: Any
+
+
+# This dictionary stores the macro definitions
+macro_store: Dict[str, MacroDefinition] = dict()
+
+
+def substitute(propvalue, values: dict):
+ """
+ Substitution of variables in strings using the variable substitution
+ library from python's standard library.
+ """
+ propvalue_template = Template(propvalue)
+ return propvalue_template.safe_substitute(**values)
+
+
+def substitute_dict(sourced: Dict[str, Any], values: Dict[str, Any]):
+ """
+ Create a copy of sourced.
+ Afterwards recursively do variable substitution on all keys and values.
+ """
+ d = deepcopy(sourced)
+ # Changes in keys:
+ replace: Dict[str, str] = dict()
+ for k in d:
+ replacement = substitute(k, values)
+ if replacement != k:
+ replace[k] = replacement
+ for k, v in replace.items():
+ d[v] = d[k]
+ del d[k]
+ # Changes in values:
+ for k, v in d.items():
+ if isinstance(v, str):
+ d[k] = substitute(v, values)
+ elif isinstance(v, list):
+ subst_list = list()
+ for i in d[k]:
+ if isinstance(i, str):
+ subst_list.append(substitute(i, values))
+ elif isinstance(i, dict):
+ subst_list.append(substitute_dict(i, values))
+ else:
+ subst_list.append(i)
+ d[k] = subst_list
+ elif isinstance(v, dict):
+ d[k] = substitute_dict(v, values)
+ else:
+ pass
+ return d
+
+
+def defmacro_constructor(loader, node):
+ """
+ Function for registering macros in yaml files.
+
+ It can be registered in pyaml using:
+ yaml.SafeLoader.add_constructor("!defmacro", defmacro_constructor)
+ """
+
+ value = loader.construct_mapping(node, deep=True)
+ params = {}
+ if "params" in value:
+ params = value["params"]
+ macro = MacroDefinition(
+ value["name"], params,
+ value["definition"])
+ macro_store[macro.name] = macro
+ return {}
+
+
+def macro_constructor(loader, node):
+ """
+ Function for substituting macros in yaml files.
+
+ It can be registered in pyaml using:
+ yaml.SafeLoader.add_constructor("!macro", macro_constructor)
+ """
+ res = dict()
+ value = loader.construct_mapping(node, deep=True)
+ for name, params_setter in value.items():
+ if name in macro_store:
+ # If params_setter is a list, run this for every element:
+ if params_setter is not None and isinstance(params_setter, list):
+ for el in params_setter:
+ macro = macro_store[name]
+ params = deepcopy(macro.params)
+ if el is not None:
+ if isinstance(el, dict):
+ params.update(el)
+ else:
+ raise RuntimeError("params type not supported")
+ else:
+ raise RuntimeError("params type must not be None")
+ definition = substitute_dict(macro.definition, params)
+ res.update(definition)
+ else:
+ # This is just a single macro:
+ macro = macro_store[name]
+ params = deepcopy(macro.params)
+ if params_setter is not None:
+ if isinstance(params_setter, dict):
+ params.update(params_setter)
+ else:
+ raise RuntimeError("params type not supported")
+ definition = substitute_dict(macro.definition, params)
+ res.update(definition)
+ else:
+ # If there is no macro with that name, just keep that node:
+ res[name] = params_setter
+
+ return res
diff --git a/src/doc/converters.rst b/src/doc/converters.rst
index a30a7d92850f90be14f82a4e563fb56df5fcde88..7ec93535ec41dc211e2fa7ee194b2ecbe1a659fb 100644
--- a/src/doc/converters.rst
+++ b/src/doc/converters.rst
@@ -185,6 +185,7 @@ a SourceResolver that is able to attach a source element to another entity.
**Note**: This example might become a standard crawler soon, as part of the scifolder specification. See https://doi.org/10.3390/data5020043 for details. In this documentation example we will, therefore, add it to a package called "scifolder".
First we will create our package and module structure, which might be:
+
.. code-block::
scifolder_package/
diff --git a/src/doc/macros.rst b/src/doc/macros.rst
index 3d995c1fbc67b155a6df606ac2f84a0cec26d1a5..569b8474c98ff8f5f5a4f2eeface10ffc1b7a849 100644
--- a/src/doc/macros.rst
+++ b/src/doc/macros.rst
@@ -37,7 +37,7 @@ The same version using cfood macros could be defined as follows:
name: null
filename: null
definition:
- ${name}_filename
+ ${name}_filename:
type: SimpleFile
match: $filename
records:
@@ -57,6 +57,8 @@ The same version using cfood macros could be defined as follows:
filename: ^README.md$
+The "MarkdownFile" key and its value will be replaced by everything that is
+given below "definition" in the Macro.
diff --git a/unittests/cfoods_scalar.yml b/unittests/cfoods_scalar.yml
new file mode 100644
index 0000000000000000000000000000000000000000..d0a728c35c27e331114cc5c18ebcfd1aa0905e31
--- /dev/null
+++ b/unittests/cfoods_scalar.yml
@@ -0,0 +1,14 @@
+# This is a test cfood for:
+# https://gitlab.com/caosdb/caosdb-crawler/-/issues/9
+
+Data: # name of the converter
+ type: Directory
+ match: (.*)
+ subtree:
+ DataAnalysis: # name of the converter
+ type: Directory
+ match: DataAnalysis
+ records:
+ RecordThatGetsParentsLater:
+ someId: 23 # <- this scalar causes problems
+
diff --git a/unittests/simulated_server_data.py b/unittests/simulated_server_data.py
index 6a523dbb06397b380510f72502a76cc6bda5f06c..dd0c6b4e8693d64c9d96cafc5db2f447613daa1b 100644
--- a/unittests/simulated_server_data.py
+++ b/unittests/simulated_server_data.py
@@ -1,20 +1,20 @@
import caosdb as db
-data_model = {"person": (db.RecordType(id=10001, name="Person")
+data_model = {"person": (db.RecordType(id=259, name="Person")
.add_property(name="first_name")
.add_property(name="last_name")),
- "measurement": (db.RecordType(id=10002, name="Measurement")
+ "measurement": (db.RecordType(id=278, name="Measurement")
.add_property(name="identifier")
.add_property(name="date")
.add_property(name="project")),
- "project": (db.RecordType(id=10003, name="Project")
+ "project": (db.RecordType(id=250, name="Project")
.add_property(name="date")
.add_property(name="identifier")),
- "first_name": db.Property(name="first_name", datatype=db.TEXT, id=10004),
- "responsible": db.Property(name="responsible", datatype="Person", id=10005),
- "last_name": db.Property(name="last_name", datatype=db.TEXT, id=10006),
- "identifier": db.Property(name="identifier", datatype=db.TEXT, id=10007),
- "date": db.Property(name="date", datatype=db.DATETIME, id=10008),
+ "first_name": db.Property(name="first_name", datatype=db.TEXT, id=261),
+ "responsible": db.Property(name="responsible", datatype="Person", id=249),
+ "last_name": db.Property(name="last_name", datatype=db.TEXT, id=262),
+ "identifier": db.Property(name="identifier", datatype=db.TEXT, id=248),
+ "date": db.Property(name="date", datatype=db.DATETIME, id=247),
}
existing_data = {
}
diff --git a/unittests/test_converters.py b/unittests/test_converters.py
index 15a39b72e75c8f26f3df80c24d48a4c5c2585029..30c5972c4f006aaf9923dfc058c3b861d8b5123b 100644
--- a/unittests/test_converters.py
+++ b/unittests/test_converters.py
@@ -23,12 +23,17 @@
"""
test the converters module
"""
+import importlib
+import os
+import pytest
+import yaml
-from caoscrawler.converters import Converter
+from caoscrawler.converters import (Converter, ConverterValidationError,
+ DictConverter, DirectoryConverter,
+ handle_value, MarkdownFileConverter,
+ JSONFileConverter)
+from caoscrawler.crawl import Crawler
from caoscrawler.stores import GeneralStore
-from caoscrawler.converters import (ConverterValidationError, DictConverter,
- DirectoryConverter, handle_value,
- MarkdownFileConverter, JSONFileConverter)
from caoscrawler.structure_elements import (File, DictTextElement,
DictListElement, DictElement,
DictBooleanElement, DictDictElement,
@@ -37,10 +42,6 @@ from caoscrawler.structure_elements import (File, DictTextElement,
from test_tool import rfp
-import pytest
-import os
-import importlib
-
@pytest.fixture
def converter_registry():
@@ -348,3 +349,39 @@ def test_filter_children_of_directory(converter_registry):
with pytest.raises(RuntimeError):
children = dc.create_children(None, test_dir)
+
+
+def test_validate_custom_converters():
+ one_doc_yaml = """
+Converters:
+ MyNewType:
+ converter: MyNewTypeConverter
+ package: some_package.my_converters
+MyElement:
+ type: MyNewType
+ match: something
+ """
+ crawler1 = Crawler()
+ one_doc_definitions = crawler1._load_definition_from_yaml_dict(
+ [yaml.load(one_doc_yaml, Loader=yaml.SafeLoader)])
+ assert "MyElement" in one_doc_definitions
+ assert one_doc_definitions["MyElement"]["type"] == "MyNewType"
+
+ # this has to be equivalent
+ two_doc_yaml = """
+---
+metadata:
+ Converters:
+ MyNewType:
+ converter: MyNewTypeConverter
+ package: some_package.my_converters
+---
+MyElement:
+ type: MyNewType
+ match: something
+ """
+ crawler2 = Crawler()
+ two_doc_definitions = crawler2._load_definition_from_yaml_dict(
+ list(yaml.safe_load_all(two_doc_yaml)))
+ assert "MyElement" in two_doc_definitions
+ assert two_doc_definitions["MyElement"]["type"] == one_doc_definitions["MyElement"]["type"]
diff --git a/unittests/test_macros.py b/unittests/test_macros.py
new file mode 100644
index 0000000000000000000000000000000000000000..7ac34cc7c48df3cb2855d7022119e4775d90c9a6
--- /dev/null
+++ b/unittests/test_macros.py
@@ -0,0 +1,330 @@
+#!/usr/bin/env python3
+# encoding: utf-8
+#
+# ** header v3.0
+# This file is a part of the CaosDB Project.
+#
+# Copyright (C) 2022 Alexander Schlemmer
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as
+# published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU Affero General Public License for more details.
+#
+# You should have received a copy of the GNU Affero General Public License
+# along with this program. If not, see <https://www.gnu.org/licenses/>.
+#
+# ** end header
+#
+
+from caoscrawler.macros import defmacro_constructor, macro_constructor
+from caoscrawler.macros.macro_yaml_object import macro_store
+from caoscrawler.crawl import Crawler
+
+from tempfile import NamedTemporaryFile
+
+import yaml
+import pytest
+
+
+@pytest.fixture
+def register_macros():
+ yaml.SafeLoader.add_constructor("!defmacro", defmacro_constructor)
+ yaml.SafeLoader.add_constructor("!macro", macro_constructor)
+
+
+@pytest.fixture
+def macro_store_reset():
+ macro_store.clear()
+
+
+def _temp_file_load(txt: str):
+ """
+ Create a temporary file with txt and load the crawler
+ definition using load_definition from Crawler.
+ """
+ definition = None
+ with NamedTemporaryFile() as f:
+ f.write(txt.encode())
+ f.flush()
+ c = Crawler()
+ definition = c.load_definition(f.name)
+ return definition
+
+
+def test_macros(register_macros, macro_store_reset):
+ dat = yaml.load("""
+defs:
+- !defmacro
+ name: test
+ params:
+ a: 2
+ b: bla
+ c: $variable
+ definition:
+ expanded_$b:
+ blubb: ok$a
+ $b: $c
+
+testnode:
+ obl: !macro
+ test:
+ a: 4
+ b: yea
+""", Loader=yaml.SafeLoader)
+ assert dat["testnode"]["obl"]["expanded_yea"]["blubb"] == "ok4"
+ assert dat["testnode"]["obl"]["expanded_yea"]["yea"] == "$variable"
+ assert "expanded_bla" not in dat["testnode"]["obl"]
+ assert "bla" not in dat["testnode"]["obl"]["expanded_yea"]
+
+
+def test_macro_list_replacment(register_macros, macro_store_reset):
+ dat = yaml.load("""
+defs:
+- !defmacro
+ name: test
+ params:
+ a: 2
+ b: bla
+ c: $variable
+ definition:
+ expanded_$b:
+ blubb:
+ - ok$a
+ - $b: $c
+
+testnode:
+ obl: !macro
+ test:
+ a: 4
+ b: yea
+""", Loader=yaml.SafeLoader)
+ assert isinstance(dat["testnode"]["obl"]["expanded_yea"]["blubb"], list)
+ assert len(dat["testnode"]["obl"]["expanded_yea"]["blubb"]) == 2
+ assert dat["testnode"]["obl"]["expanded_yea"]["blubb"][0] == "ok4"
+ assert dat["testnode"]["obl"]["expanded_yea"]["blubb"][1]["yea"] == "$variable"
+
+
+def test_multi_macros(register_macros, macro_store_reset):
+ dat = yaml.load("""
+defs:
+- !defmacro
+ name: test_one
+ params: {}
+ definition:
+ replaced1: ok
+- !defmacro
+ name: test_two
+ params: {}
+ definition:
+ replaced2: ok
+ replaced3: ok
+
+testnode:
+ obl: !macro
+ test_one:
+ test_two:
+""", Loader=yaml.SafeLoader)
+ assert dat["testnode"]["obl"]["replaced1"] == "ok"
+ assert dat["testnode"]["obl"]["replaced2"] == "ok"
+ assert dat["testnode"]["obl"]["replaced3"] == "ok"
+
+
+def test_multi_macros_toplevel(register_macros, macro_store_reset):
+ """
+ See: https://gitlab.indiscale.com/caosdb/src/caosdb-crawler/-/issues/23
+ """
+ dat_loader = list(yaml.safe_load_all("""
+---
+metadata:
+ macros:
+ - !defmacro
+ name: test_one
+ params: {}
+ definition:
+ replaced1: ok
+ - !defmacro
+ name: test_two
+ params: {}
+ definition:
+ replaced2: ok
+ replaced3: ok
+---
+testnode: !macro
+ test_one:
+ test_two:
+"""))
+ assert len(dat_loader) == 2
+ dat = dat_loader[1]
+ assert dat["testnode"]["replaced1"] == "ok"
+ assert dat["testnode"]["replaced2"] == "ok"
+ assert dat["testnode"]["replaced3"] == "ok"
+
+
+def test_load_definition(register_macros, macro_store_reset):
+ txt = """
+extroot:
+ type: Directory
+ match: extroot
+ subtree:
+ SimulationData:
+ type: Directory
+ match: SimulationData
+ """
+ # Check whether simple cfoods can be loaded:
+ cfood = _temp_file_load(txt)
+ assert cfood["extroot"]["subtree"]["SimulationData"]["match"] == "SimulationData"
+
+ cfood = _temp_file_load("""
+---
+metadata:
+ macros:
+ - !defmacro
+ name: test_one
+ params: {}
+ definition:
+ replaced1: ok
+ - !defmacro
+ name: test_two
+ params:
+ match_name: null
+ definition:
+ type: Directory
+ match: $match_name
+---
+extroot:
+ type: Directory
+ match: extroot
+ subtree:
+ SimulationData:
+ type: Directory
+ match: SimulationData
+extroot2: !macro # test top level macro
+ test_one:
+extroot3:
+ subtree:
+ SimulationData: !macro
+ test_two:
+ match_name: SimulationData
+ """)
+ assert cfood["extroot"]["subtree"]["SimulationData"]["match"] == "SimulationData"
+ assert cfood["extroot2"]["replaced1"] == "ok"
+ assert cfood["extroot3"]["subtree"]["SimulationData"]["match"] == "SimulationData"
+
+
+@pytest.mark.xfail
+def test_replace_arbitrary_objects(register_macros, macro_store_reset):
+ """
+ See: https://gitlab.indiscale.com/caosdb/src/caosdb-crawler/-/issues/24
+ """
+ dat = yaml.load("""
+defs:
+- !defmacro
+ name: test
+ params:
+ b: 25
+ testvar_list:
+ - a
+ - $b
+ testvar_dict:
+ t1: a
+ t2: $b
+ definition:
+ replaced1:
+ $b: ok
+ c: $testvar_dict
+ d: $testvar_list
+
+testnode:
+ obl: !macro
+ test:
+""", Loader=yaml.SafeLoader)
+ print(yaml.dump(dat))
+ assert dat["testnode"]["obl"]["replaced1"]["c"]["t1"] == "a"
+ assert dat["testnode"]["obl"]["replaced1"]["c"]["t2"] == "25"
+ assert dat["testnode"]["obl"]["replaced1"]["d"][0] == "a"
+ assert dat["testnode"]["obl"]["replaced1"]["d"][1] == "25"
+
+
+def test_circular_macro_definition(register_macros, macro_store_reset):
+ """Test the (ab-)use of macros to create an infinite loop."""
+ cfood = _temp_file_load("""
+---
+metadata:
+ macros:
+ - !defmacro
+ name: test_one
+ params: {}
+ definition: !macro
+ test_two:
+ - !defmacro
+ name: test_two
+ params: {}
+ definition: !macro
+ test_one:
+ - !defmacro
+ name: test_three
+ params: {}
+ definition: !macro
+ test_two:
+ - !defmacro
+ name: test_four
+ params: {}
+ definition: !macro
+ test_four:
+---
+extroot: !macro
+ test_one:
+extroot2: !macro
+ test_three:
+extroot3: !macro
+ test_four:
+ """)
+ # macros in macros can be used, but there are no circles; they stop at the first one.
+ assert "test_one" not in cfood["extroot"]
+ assert cfood["extroot"]["test_two"] is None
+ assert "test_three" not in cfood["extroot2"]
+ assert "test_one" not in cfood["extroot2"]
+ assert cfood["extroot2"]["test_two"] is None
+ # No recursion
+ assert cfood["extroot3"]["test_four"] is None
+
+
+# @pytest.mark.xfail(reason="Fix multiple usage of the same macro.")
+def test_use_macro_twice():
+ """Test that the same macro can be used twice with different parameters in
+ the same CFood element if the name depends on the parameters.
+
+ """
+
+ cfood = _temp_file_load("""
+---
+metadata:
+ macros:
+ - !defmacro
+ name: test_twice
+ params:
+ macro_name: default_name
+ a: 4
+ definition:
+ $macro_name:
+ something:
+ a: $a
+---
+extroot: !macro
+ test_twice:
+ - macro_name: once
+ - macro_name: twice
+ a: 5
+ - {}
+ """)
+ for name in ["once", "twice", "default_name"]:
+ assert name in cfood["extroot"]
+ assert cfood["extroot"]["once"]["something"]["a"] == "4"
+ assert cfood["extroot"]["twice"]["something"]["a"] == "5"
+ assert cfood["extroot"]["default_name"]["something"]["a"] == "4"
diff --git a/unittests/test_scalars_cfood.py b/unittests/test_scalars_cfood.py
new file mode 100644
index 0000000000000000000000000000000000000000..1bf8f0b7d67f00f2018b5b68424d6b9cc17602eb
--- /dev/null
+++ b/unittests/test_scalars_cfood.py
@@ -0,0 +1,57 @@
+#!/bin/python
+# Tests for:
+# https://gitlab.com/caosdb/caosdb-crawler/-/issues/9
+# A. Schlemmer, 06/2021
+
+import pytest
+
+# The main function that is affected by this issue:
+from caoscrawler.converters import handle_value
+from caoscrawler.crawl import Crawler
+# We need the store for the above function
+from caoscrawler.stores import GeneralStore
+
+from test_tool import dircheckstr, rfp
+
+
+@pytest.fixture
+def crawler():
+ crawler = Crawler(debug=True)
+ crawler.crawl_directory(rfp("test_directories", "examples_article"),
+ rfp("cfoods_scalar.yml"))
+ return crawler
+
+
+def test_handle_value():
+ # Note that we will need this store only, if we also want to test variables substitution:
+ store = GeneralStore()
+
+ # This one should work:
+ assert handle_value("bla", store) == ("bla", "single")
+
+ # These failed:
+ assert handle_value(4, store) == (4, "single")
+ assert handle_value(4.2, store) == (4.2, "single")
+ assert handle_value(True, store) == (True, "single")
+
+ # List test:
+ assert handle_value([4, 3, 2], store) == ([4, 3, 2], "single")
+
+
+def test_record_structure_generation(crawler):
+ subd = crawler.debug_tree[dircheckstr("DataAnalysis")]
+ assert len(subd) == 2
+ # variables store on Data Analysis node of debug tree
+ assert len(subd[0]) == 3
+ assert "Data" in subd[0]
+ assert "DataAnalysis" in subd[0]
+ assert "RecordThatGetsParentsLater" in subd[0]
+
+ prop = subd[0]["RecordThatGetsParentsLater"].get_property("someId")
+ assert type(prop.value) == int
+ assert prop.value == 23
+
+ # record store on Data Analysis node of debug tree
+ assert len(subd[1]) == 1
+ prop2 = subd[1]["RecordThatGetsParentsLater"].get_property("someId")
+ assert prop == prop2
diff --git a/unittests/test_tool.py b/unittests/test_tool.py
index 59573756fe61ef697976e480dd1550cb0ead0998..a190efdeaaa9b3ede8d6fc1b9d1fb2d6e0d9c210 100755
--- a/unittests/test_tool.py
+++ b/unittests/test_tool.py
@@ -29,11 +29,19 @@ def rfp(*pathcomponents):
return join(dirname(__file__), *pathcomponents)
+ident = LocalStorageIdentifiableAdapter()
+ident.restore_state(rfp("records.xml"))
+full_data.update({el.name: el for el in ident._records if el.name is not None})
+full_data.update({el.id: el for el in ident._records if el.name is None})
+
+
def dircheckstr(*pathcomponents):
"""
Return the debug tree identifier for a given path.
"""
- return "caoscrawler.structure_elements.Directory: " + basename(join(*pathcomponents)) + ", " + rfp("test_directories", "examples_article", *pathcomponents)
+ return ("caoscrawler.structure_elements.Directory: " + basename(
+ join(*pathcomponents)) + ", " + rfp(
+ "test_directories", "examples_article", *pathcomponents))
@pytest.fixture
@@ -87,7 +95,7 @@ def test_record_structure_generation(crawler):
# The data analysis node creates one variable for the node itself:
assert subd[0]["DataAnalysis"] == "examples_article/DataAnalysis"
- assert subc[0]["DataAnalysis"] == False
+ assert subc[0]["DataAnalysis"] is False
subd = crawler.debug_tree[dircheckstr(
"DataAnalysis", "2020_climate-model-predict")]
@@ -107,9 +115,9 @@ def test_record_structure_generation(crawler):
assert subd[0]["Project"].__class__ == db.Record
assert subd[0]["DataAnalysis"] == "examples_article/DataAnalysis"
- assert subc[0]["DataAnalysis"] == True
+ assert subc[0]["DataAnalysis"] is True
assert subd[0]["project_dir"] == "examples_article/DataAnalysis/2020_climate-model-predict"
- assert subc[0]["project_dir"] == False
+ assert subc[0]["project_dir"] is False
# Check the copy flags for the first level in the hierarchy:
assert len(subc[0]) == 6
@@ -201,7 +209,8 @@ def test_crawler_update_list(crawler, ident):
assert len(ident.get_records()) != len(crawler.target_data)
# Check consistency:
- # Check whether identifiables retrieved from current identifiable store return the same results.
+ # Check whether identifiables retrieved from current identifiable store return
+ # the same results.
# take the first person in the list of records:
for r in ident.get_records():
@@ -541,12 +550,21 @@ def test_replace_entities_with_ids(crawler):
assert a.get_property("C").value == [12345, 233324]
+def mock_get_entity_by_id(id):
+ candidates = [el for el in list(full_data.values()) if el.id == id]
+ if len(candidates) > 0:
+ return candidates[0]
+ else:
+ raise ValueError()
+
+
def mock_get_entity_by_name(name):
- candidates = [el for el in full_data.values() if el.name.lower() == name.lower()]
+ candidates = [el for el in full_data.values()
+ if (el.name is not None and el.name.lower() == name.lower())]
if len(candidates) > 0:
return candidates[0]
else:
- return None
+ raise ValueError()
def prepare_crawler_with_sec_mode(mode, ident):
@@ -584,6 +602,8 @@ def change_non_identifiable_prop(ident):
del resps.value[-1]
+@patch("caoscrawler.crawl.Crawler._get_entity_by_id",
+ new=Mock(side_effect=mock_get_entity_by_id))
@patch("caoscrawler.crawl.Crawler._get_entity_by_name",
new=Mock(side_effect=mock_get_entity_by_name))
@patch("caoscrawler.crawl.db.Container.insert")