From 4a122dd9e2b1bad4f48452853c0c6f2ac1cbe8e8 Mon Sep 17 00:00:00 2001
From: Daniel <d.hornung@indiscale.com>
Date: Thu, 11 May 2023 16:11:11 +0200
Subject: [PATCH] WIP: Rename caosdb -> linkahead
---
integrationtests/clear_database.py | 2 +-
integrationtests/crawl.py | 12 ++++++------
integrationtests/create_analysis.py | 4 ++--
integrationtests/example_hdf5cfood.py | 8 ++++----
integrationtests/filldb.sh | 10 +++++-----
integrationtests/insert_model.py | 8 ++++----
integrationtests/insert_some.py | 4 ++--
integrationtests/test.sh | 6 +++---
integrationtests/test_assure_functions.py | 10 +++++-----
.../test_base_table_exporter_integration.py | 4 ++--
integrationtests/test_cache.py | 4 ++--
.../test_crawl_with_datamodel_problems.py | 18 +++++++++---------
integrationtests/test_crawler_basics.py | 8 ++++----
integrationtests/test_crawler_with_cfoods.py | 2 +-
integrationtests/test_data_model.py | 4 ++--
integrationtests/test_datamodel_problems.py | 4 ++--
integrationtests/test_im_und_export.py | 6 +++---
.../test_json_schema_datamodel_parser.py | 4 ++--
integrationtests/test_table.py | 8 ++++----
integrationtests/test_yaml_parser.py | 4 ++--
integrationtests/update_analysis.py | 4 ++--
unittests/test_base_table_exporter.py | 4 ++--
unittests/test_cache.py | 4 ++--
unittests/test_caosdbignore.py | 2 +-
unittests/test_cfood.py | 10 +++++-----
unittests/test_cfoods.py | 2 +-
unittests/test_crawler.py | 4 ++--
unittests/test_data_model.py | 4 ++--
unittests/test_generic_analysis.py | 4 ++--
unittests/test_h5.py | 14 +++++++-------
unittests/test_json_schema_model_parser.py | 4 ++--
unittests/test_read_md_header.py | 4 ++--
unittests/test_result_table_cfood.py | 4 ++--
unittests/test_scifolder_utils.py | 2 +-
unittests/test_sss_helper.py | 6 +++---
unittests/test_structure_mapping.py | 6 +++---
unittests/test_suppressKnown.py | 2 +-
unittests/test_table_converter.py | 6 +++---
unittests/test_table_importer.py | 4 ++--
unittests/test_update_cache.py | 4 ++--
unittests/test_utils.py | 8 ++++----
unittests/test_yaml_model_parser.py | 4 ++--
42 files changed, 118 insertions(+), 118 deletions(-)
diff --git a/integrationtests/clear_database.py b/integrationtests/clear_database.py
index 362f2e3a..6c6f61c6 100644
--- a/integrationtests/clear_database.py
+++ b/integrationtests/clear_database.py
@@ -23,7 +23,7 @@
# ** end header
#
"""Clear the database before and after the integration tests."""
-import caosdb as db
+import linkahead as db
def clear_all():
diff --git a/integrationtests/crawl.py b/integrationtests/crawl.py
index 6c29d0b7..77feb851 100755
--- a/integrationtests/crawl.py
+++ b/integrationtests/crawl.py
@@ -28,11 +28,11 @@ import logging
import sys
from argparse import RawTextHelpFormatter
-import caosdb as db
-from caosadvancedtools.cfood import fileguide
-from caosadvancedtools.crawler import FileCrawler
-from caosadvancedtools.guard import INSERT, UPDATE
-from caosadvancedtools.scifolder import (AnalysisCFood, ExperimentCFood,
+import linkahead as db
+from linkaheadadvancedtools.cfood import fileguide
+from linkaheadadvancedtools.crawler import FileCrawler
+from linkaheadadvancedtools.guard import INSERT, UPDATE
+from linkaheadadvancedtools.scifolder import (AnalysisCFood, ExperimentCFood,
PublicationCFood, SimulationCFood,
SoftwareCFood, ResultTableCFood)
@@ -68,7 +68,7 @@ def access(path):
if __name__ == "__main__":
- logger = logging.getLogger("caosadvancedtools")
+ logger = logging.getLogger("linkaheadadvancedtools")
logger.addHandler(logging.StreamHandler(sys.stdout))
conlogger = logging.getLogger("connection")
conlogger.setLevel(level=logging.ERROR)
diff --git a/integrationtests/create_analysis.py b/integrationtests/create_analysis.py
index 0d0c91c2..8a767e74 100644
--- a/integrationtests/create_analysis.py
+++ b/integrationtests/create_analysis.py
@@ -31,12 +31,12 @@ automated analysis pipeline.
import sys
from datetime import datetime
-import caosdb as db
+import linkahead as db
def main():
script = db.File(
- file="../src/caosadvancedtools/serverside/examples/example_script.py",
+ file="../src/linkaheadadvancedtools/serverside/examples/example_script.py",
path=("AutomatedAnalysis/scripts/"
+ str(datetime.now())+"example_script.py"),
)
diff --git a/integrationtests/example_hdf5cfood.py b/integrationtests/example_hdf5cfood.py
index dadd94df..4f382f8f 100644
--- a/integrationtests/example_hdf5cfood.py
+++ b/integrationtests/example_hdf5cfood.py
@@ -27,10 +27,10 @@
An exemplary definition of a HDF5 CFood for integration testing
"""
-import caosdb as db
-from caosadvancedtools.cfoods.h5 import H5CFood
-from caosadvancedtools.scifolder import ExperimentCFood
-from caosadvancedtools.scifolder.generic_pattern import readme_pattern
+import linkahead as db
+from linkaheadadvancedtools.cfoods.h5 import H5CFood
+from linkaheadadvancedtools.scifolder import ExperimentCFood
+from linkaheadadvancedtools.scifolder.generic_pattern import readme_pattern
class ExampleH5CFood(H5CFood):
diff --git a/integrationtests/filldb.sh b/integrationtests/filldb.sh
index 9ee9060e..9c45d5fd 100755
--- a/integrationtests/filldb.sh
+++ b/integrationtests/filldb.sh
@@ -1,11 +1,11 @@
#!/bin/bash
# fill database
-python3 -m caosadvancedtools.loadFiles /opt/caosdb/mnt/extroot/ExperimentalData
-python3 -m caosadvancedtools.loadFiles /opt/caosdb/mnt/extroot/DataAnalysis
-python3 -m caosadvancedtools.loadFiles /opt/caosdb/mnt/extroot/SimulationData
-python3 -m caosadvancedtools.loadFiles /opt/caosdb/mnt/extroot/Publications
-python3 -m caosadvancedtools.loadFiles -c caosdbignore -l $PWD/extroot/Software /opt/caosdb/mnt/extroot/Software
+python3 -m linkaheadadvancedtools.loadFiles /opt/linkahead/mnt/extroot/ExperimentalData
+python3 -m linkaheadadvancedtools.loadFiles /opt/linkahead/mnt/extroot/DataAnalysis
+python3 -m linkaheadadvancedtools.loadFiles /opt/linkahead/mnt/extroot/SimulationData
+python3 -m linkaheadadvancedtools.loadFiles /opt/linkahead/mnt/extroot/Publications
+python3 -m linkaheadadvancedtools.loadFiles -c caosdbignore -l $PWD/extroot/Software /opt/linkahead/mnt/extroot/Software
python3 insert_model.py
python3 insert_some.py
python3 crawl.py /
diff --git a/integrationtests/insert_model.py b/integrationtests/insert_model.py
index 26bf478c..1d2b2ce2 100755
--- a/integrationtests/insert_model.py
+++ b/integrationtests/insert_model.py
@@ -1,9 +1,9 @@
#!/usr/bin/env python3
-import caosdb as db
+import linkahead as db
import h5py
-from caosadvancedtools.cfoods.h5 import H5CFood
-from caosadvancedtools.models.data_model import DataModel
-from caosadvancedtools.models.parser import parse_model_from_yaml
+from linkaheadadvancedtools.cfoods.h5 import H5CFood
+from linkaheadadvancedtools.models.data_model import DataModel
+from linkaheadadvancedtools.models.parser import parse_model_from_yaml
def main():
diff --git a/integrationtests/insert_some.py b/integrationtests/insert_some.py
index cf16a45d..2fbc9d0f 100644
--- a/integrationtests/insert_some.py
+++ b/integrationtests/insert_some.py
@@ -1,6 +1,6 @@
#!/usr/bin/env python3
-import caosdb as db
-from caosadvancedtools.scifolder.experiment_cfood import dm
+import linkahead as db
+from linkaheadadvancedtools.scifolder.experiment_cfood import dm
# This inserts two identifiables. When no dependencies are possible among
# identifiables, it should not be possible to find both: the experiment
diff --git a/integrationtests/test.sh b/integrationtests/test.sh
index 9f8d003c..e5a87ae0 100755
--- a/integrationtests/test.sh
+++ b/integrationtests/test.sh
@@ -16,8 +16,8 @@ fi
OUT=/tmp/crawler.output
ls
cat pycaosdb.ini
-python3 -c "import caosdb; print('CaosDB Version:', caosdb.__version__)"
-rm -rf /tmp/caosdb_identifiable_cache.db
+python3 -c "import linkahead; print('CaosDB Version:', caosdb.__version__)"
+rm -rf /tmp/linkahead_identifiable_cache.db
set -e
echo "Clearing database"
python3 clear_database.py
@@ -76,7 +76,7 @@ python3 test_im_und_export.py
# automated analysis
# for some reason the loadFiles of sim data has to be called again
-python3 -m caosadvancedtools.loadFiles /opt/caosdb/mnt/extroot/SimulationData
+python3 -m linkaheadadvancedtools.loadFiles /opt/linkahead/mnt/extroot/SimulationData
python3 create_analysis.py
# Better safe than sorry:
diff --git a/integrationtests/test_assure_functions.py b/integrationtests/test_assure_functions.py
index d545bbb5..4226520b 100644
--- a/integrationtests/test_assure_functions.py
+++ b/integrationtests/test_assure_functions.py
@@ -21,14 +21,14 @@
# You should have received a copy of the GNU Affero General Public License along
# with this program. If not, see <https://www.gnu.org/licenses/>.
"""Integration tests for the `assure_...` functions from
-`caosadvancedtools.cfood`. They mainly test the in-place updates when
+`linkaheadadvancedtools.cfood`. They mainly test the in-place updates when
no `to_be_updated` is specified.
"""
-import caosdb as db
+import linkahead as db
-from caosadvancedtools.cfood import (assure_object_is_in_list)
-from caosadvancedtools.guard import (global_guard, RETRIEVE, UPDATE)
+from linkaheadadvancedtools.cfood import (assure_object_is_in_list)
+from linkaheadadvancedtools.guard import (global_guard, RETRIEVE, UPDATE)
def setup():
@@ -92,7 +92,7 @@ def test_assure_list_in_place():
def test_add_to_empty_list():
- """See https://gitlab.com/caosdb/caosdb-advanced-user-tools/-/issues/40."""
+ """See https://gitlab.com/linkahead/linkahead-advanced-user-tools/-/issues/40."""
# @author Florian Spreckelsen
# @date 2022-04-19
referenced_rt = db.RecordType(name="TestReferencedType").insert()
diff --git a/integrationtests/test_base_table_exporter_integration.py b/integrationtests/test_base_table_exporter_integration.py
index af1bb333..907b0c4c 100644
--- a/integrationtests/test_base_table_exporter_integration.py
+++ b/integrationtests/test_base_table_exporter_integration.py
@@ -22,9 +22,9 @@
#
# ** end header
#
-import caosdb as db
+import linkahead as db
import pytest
-from caosadvancedtools import table_export as te
+from linkaheadadvancedtools import table_export as te
class IntegrationExporter(te.BaseTableExporter):
diff --git a/integrationtests/test_cache.py b/integrationtests/test_cache.py
index 7456b8e5..0514b21b 100644
--- a/integrationtests/test_cache.py
+++ b/integrationtests/test_cache.py
@@ -26,8 +26,8 @@ import os
import unittest
from tempfile import NamedTemporaryFile
-import caosdb as db
-from caosadvancedtools.cache import UpdateCache
+import linkahead as db
+from linkaheadadvancedtools.cache import UpdateCache
class CacheTest(unittest.TestCase):
diff --git a/integrationtests/test_crawl_with_datamodel_problems.py b/integrationtests/test_crawl_with_datamodel_problems.py
index 18bd4e52..acf47b92 100644
--- a/integrationtests/test_crawl_with_datamodel_problems.py
+++ b/integrationtests/test_crawl_with_datamodel_problems.py
@@ -25,14 +25,14 @@
"""
-import caosdb as db
-from caosadvancedtools import loadFiles
-from caosadvancedtools.cfood import fileguide
-from caosadvancedtools.crawler import FileCrawler
-from caosadvancedtools.datamodel_problems import DataModelProblems
-from caosadvancedtools.guard import INSERT
-from caosadvancedtools.models.parser import parse_model_from_yaml
-from caosadvancedtools.scifolder import (AnalysisCFood, ExperimentCFood,
+import linkahead as db
+from linkaheadadvancedtools import loadFiles
+from linkaheadadvancedtools.cfood import fileguide
+from linkaheadadvancedtools.crawler import FileCrawler
+from linkaheadadvancedtools.datamodel_problems import DataModelProblems
+from linkaheadadvancedtools.guard import INSERT
+from linkaheadadvancedtools.models.parser import parse_model_from_yaml
+from linkaheadadvancedtools.scifolder import (AnalysisCFood, ExperimentCFood,
PublicationCFood, SimulationCFood)
from insert_model import main as insert_model
@@ -60,7 +60,7 @@ def teardown():
def test_crawler_with_data_model_problems():
"""Test whether data model problems are found correctly."""
# load the files
- basepath = "/opt/caosdb/mnt/extroot/"
+ basepath = "/opt/linkahead/mnt/extroot/"
pathlist = [basepath+dirname for dirname in
["ExperimentalData", "DataAnalysis",
"SimulationData", "Publications"]]
diff --git a/integrationtests/test_crawler_basics.py b/integrationtests/test_crawler_basics.py
index 98ca228e..f93be901 100644
--- a/integrationtests/test_crawler_basics.py
+++ b/integrationtests/test_crawler_basics.py
@@ -29,11 +29,11 @@ cfoods. This is tested in test_crawler_with_cfoods.py.
"""
import unittest
-import caosdb as db
+import linkahead as db
-from caosadvancedtools.crawler import Crawler
-from caosadvancedtools.guard import INSERT
-from caosadvancedtools.guard import global_guard as guard
+from linkaheadadvancedtools.crawler import Crawler
+from linkaheadadvancedtools.guard import INSERT
+from linkaheadadvancedtools.guard import global_guard as guard
def setup_module():
diff --git a/integrationtests/test_crawler_with_cfoods.py b/integrationtests/test_crawler_with_cfoods.py
index dc427227..801bf4b3 100755
--- a/integrationtests/test_crawler_with_cfoods.py
+++ b/integrationtests/test_crawler_with_cfoods.py
@@ -25,7 +25,7 @@
import os
import unittest
-import caosdb as db
+import linkahead as db
from caosdb.apiutils import retrieve_entity_with_id
diff --git a/integrationtests/test_data_model.py b/integrationtests/test_data_model.py
index 5bf168cd..47e249c3 100644
--- a/integrationtests/test_data_model.py
+++ b/integrationtests/test_data_model.py
@@ -1,7 +1,7 @@
import unittest
-import caosdb as db
-from caosadvancedtools.models.data_model import DataModel
+import linkahead as db
+from linkaheadadvancedtools.models.data_model import DataModel
class DataModelTest(unittest.TestCase):
diff --git a/integrationtests/test_datamodel_problems.py b/integrationtests/test_datamodel_problems.py
index a7eb1a26..5c316b7b 100644
--- a/integrationtests/test_datamodel_problems.py
+++ b/integrationtests/test_datamodel_problems.py
@@ -27,9 +27,9 @@ during crawling that tests the integrations of the DataModelProblems
class in crawler.py and cfood.py can be found in full-tests.
"""
-import caosdb as db
+import linkahead as db
import pytest
-from caosadvancedtools.datamodel_problems import DataModelProblems
+from linkaheadadvancedtools.datamodel_problems import DataModelProblems
from caosdb.exceptions import (TransactionError,
UnqualifiedParentsError,
UnqualifiedPropertiesError)
diff --git a/integrationtests/test_im_und_export.py b/integrationtests/test_im_und_export.py
index 407faa1a..f7c065ca 100644
--- a/integrationtests/test_im_und_export.py
+++ b/integrationtests/test_im_und_export.py
@@ -2,9 +2,9 @@
import os
from tempfile import TemporaryDirectory
-import caosdb as db
-from caosadvancedtools.export_related import export_related_to
-from caosadvancedtools.import_from_xml import import_xml
+import linkahead as db
+from linkaheadadvancedtools.export_related import export_related_to
+from linkaheadadvancedtools.import_from_xml import import_xml
if __name__ == "__main__":
print("Conducting im- and export tests")
diff --git a/integrationtests/test_json_schema_datamodel_parser.py b/integrationtests/test_json_schema_datamodel_parser.py
index 04af1570..7267a197 100644
--- a/integrationtests/test_json_schema_datamodel_parser.py
+++ b/integrationtests/test_json_schema_datamodel_parser.py
@@ -20,8 +20,8 @@
import os
-import caosdb as db
-from caosadvancedtools.models.parser import parse_model_from_json_schema
+import linkahead as db
+from linkaheadadvancedtools.models.parser import parse_model_from_json_schema
def _clear_db():
diff --git a/integrationtests/test_table.py b/integrationtests/test_table.py
index b222c264..59b12a9e 100644
--- a/integrationtests/test_table.py
+++ b/integrationtests/test_table.py
@@ -20,14 +20,14 @@
import logging
-import caosdb as db
+import linkahead as db
import pandas as pd
-from caosadvancedtools.crawler import TableCrawler
-from caosadvancedtools.guard import UPDATE
+from linkaheadadvancedtools.crawler import TableCrawler
+from linkaheadadvancedtools.guard import UPDATE
if __name__ == "__main__":
- logger = logging.getLogger("caosadvancedtools")
+ logger = logging.getLogger("linkaheadadvancedtools")
conlogger = logging.getLogger("connection")
conlogger.setLevel(level=logging.ERROR)
logger.setLevel(level=logging.DEBUG)
diff --git a/integrationtests/test_yaml_parser.py b/integrationtests/test_yaml_parser.py
index e5656bcf..3c8d019c 100644
--- a/integrationtests/test_yaml_parser.py
+++ b/integrationtests/test_yaml_parser.py
@@ -19,8 +19,8 @@
# with this program. If not, see <https://www.gnu.org/licenses/>.
#
-import caosdb as db
-from caosadvancedtools.models.parser import parse_model_from_string
+import linkahead as db
+from linkaheadadvancedtools.models.parser import parse_model_from_string
def _delete_everything():
diff --git a/integrationtests/update_analysis.py b/integrationtests/update_analysis.py
index 4edbe101..12d8ba2a 100644
--- a/integrationtests/update_analysis.py
+++ b/integrationtests/update_analysis.py
@@ -34,8 +34,8 @@ entities that where changed within a certain period of time.
import sys
-import caosdb as db
-from caosadvancedtools.serverside.generic_analysis import run
+import linkahead as db
+from linkaheadadvancedtools.serverside.generic_analysis import run
def main():
diff --git a/unittests/test_base_table_exporter.py b/unittests/test_base_table_exporter.py
index d3b91ca3..e82bf2ca 100644
--- a/unittests/test_base_table_exporter.py
+++ b/unittests/test_base_table_exporter.py
@@ -28,9 +28,9 @@ tested without db connection.
"""
import json
import os
-import caosdb as db
+import linkahead as db
from pytest import raises
-from caosadvancedtools import table_export as te
+from linkaheadadvancedtools import table_export as te
class DummyExporter(te.BaseTableExporter):
diff --git a/unittests/test_cache.py b/unittests/test_cache.py
index 9e11acc0..848fafdc 100644
--- a/unittests/test_cache.py
+++ b/unittests/test_cache.py
@@ -26,8 +26,8 @@ from copy import deepcopy
from tempfile import NamedTemporaryFile
import sqlite3
-import caosdb as db
-from caosadvancedtools.cache import IdentifiableCache, cleanXML
+import linkahead as db
+from linkaheadadvancedtools.cache import IdentifiableCache, cleanXML
from lxml import etree
import pytest
diff --git a/unittests/test_caosdbignore.py b/unittests/test_caosdbignore.py
index 77ce236b..d017b308 100644
--- a/unittests/test_caosdbignore.py
+++ b/unittests/test_caosdbignore.py
@@ -29,7 +29,7 @@ import re
from tempfile import NamedTemporaryFile
import unittest
-from caosadvancedtools.loadFiles import compile_file_list, create_re_for_file_list, combine_ignore_files
+from linkaheadadvancedtools.loadFiles import compile_file_list, create_re_for_file_list, combine_ignore_files
BASEDIR = os.path.dirname(os.path.realpath(__file__))
diff --git a/unittests/test_cfood.py b/unittests/test_cfood.py
index 6c790d5b..ebb7010c 100644
--- a/unittests/test_cfood.py
+++ b/unittests/test_cfood.py
@@ -24,15 +24,15 @@
import re
import unittest
-import caosdb as db
-from caosadvancedtools.cfood import (AbstractCFood, AbstractFileCFood, CMeal,
+import linkahead as db
+from linkaheadadvancedtools.cfood import (AbstractCFood, AbstractFileCFood, CMeal,
assure_has_parent, assure_has_property,
assure_object_is_in_list,
assure_parents_are, assure_property_is,
get_entity_for_path)
-from caosadvancedtools.crawler import FileCrawler
-from caosadvancedtools.example_cfood import ExampleCFood
-from caosdb.common.models import _parse_single_xml_element
+from linkaheadadvancedtools.crawler import FileCrawler
+from linkaheadadvancedtools.example_cfood import ExampleCFood
+from linkahead.common.models import _parse_single_xml_element
from lxml import etree
from datetime import datetime, timezone
diff --git a/unittests/test_cfoods.py b/unittests/test_cfoods.py
index 87e6d6d2..a6dada02 100644
--- a/unittests/test_cfoods.py
+++ b/unittests/test_cfoods.py
@@ -18,7 +18,7 @@
import os
import unittest
-from caosadvancedtools.scifolder import (AnalysisCFood, ExperimentCFood,
+from linkaheadadvancedtools.scifolder import (AnalysisCFood, ExperimentCFood,
PublicationCFood, SimulationCFood)
data_path = os.path.join(os.path.dirname(os.path.realpath(__file__)),
diff --git a/unittests/test_crawler.py b/unittests/test_crawler.py
index eb5c9b9a..0828596c 100644
--- a/unittests/test_crawler.py
+++ b/unittests/test_crawler.py
@@ -23,8 +23,8 @@
import re
import unittest
-import caosdb as db
-from caosadvancedtools.crawler import Crawler
+import linkahead as db
+from linkaheadadvancedtools.crawler import Crawler
class CrawlerTest(unittest.TestCase):
diff --git a/unittests/test_data_model.py b/unittests/test_data_model.py
index 159adfca..44a5857b 100644
--- a/unittests/test_data_model.py
+++ b/unittests/test_data_model.py
@@ -1,7 +1,7 @@
import unittest
-import caosdb as db
-from caosadvancedtools.models.data_model import DataModel
+import linkahead as db
+from linkaheadadvancedtools.models.data_model import DataModel
class DataModelTest(unittest.TestCase):
diff --git a/unittests/test_generic_analysis.py b/unittests/test_generic_analysis.py
index 79410ad9..f9060b2a 100644
--- a/unittests/test_generic_analysis.py
+++ b/unittests/test_generic_analysis.py
@@ -27,8 +27,8 @@
module description
"""
-import caosdb as db
-from caosadvancedtools.serverside.generic_analysis import \
+import linkahead as db
+from linkaheadadvancedtools.serverside.generic_analysis import \
check_referenced_script
from test_utils import BaseMockUpTest
diff --git a/unittests/test_h5.py b/unittests/test_h5.py
index 360d4b28..67b0ea45 100644
--- a/unittests/test_h5.py
+++ b/unittests/test_h5.py
@@ -1,12 +1,12 @@
import unittest
from tempfile import NamedTemporaryFile
-import caosdb as db
-import caosdb.apiutils
+import linkahead as db
+import linkahead.apiutils
import h5py
import numpy as np
-from caosadvancedtools.cfoods import h5
-from caosadvancedtools.cfoods.h5 import h5_attr_to_property
+from linkaheadadvancedtools.cfoods import h5
+from linkaheadadvancedtools.cfoods.h5 import h5_attr_to_property
from create_dummy_hdf5file import create_hdf5_file
@@ -77,8 +77,8 @@ class H5CFoodTest(unittest.TestCase):
# TODO this does probably break the code: The function will not be
# restored correctly.
# Change it to use the BaseMockUpTest
- real_retrieve = caosdb.apiutils.retrieve_entity_with_id
- caosdb.apiutils.retrieve_entity_with_id = dummy_get
+ real_retrieve = linkahead.apiutils.retrieve_entity_with_id
+ linkahead.apiutils.retrieve_entity_with_id = dummy_get
# should run without problem
h5.collect_existing_structure(db.Record(), db.Record(id=234), h5.EntityMapping())
@@ -151,7 +151,7 @@ class H5CFoodTest(unittest.TestCase):
self.assertEqual(em.to_existing[r_child2._cuid], ENTS[101])
self.assertEqual(em.to_target[101], r_child2)
- caosdb.apiutils.retrieve_entity_with_id = real_retrieve
+ linkahead.apiutils.retrieve_entity_with_id = real_retrieve
def test_h5_attr_to_property(self):
diff --git a/unittests/test_json_schema_model_parser.py b/unittests/test_json_schema_model_parser.py
index 22308466..96b1076a 100644
--- a/unittests/test_json_schema_model_parser.py
+++ b/unittests/test_json_schema_model_parser.py
@@ -24,8 +24,8 @@
import os
import pytest
-import caosdb as db
-from caosadvancedtools.models.parser import (parse_model_from_json_schema,
+import linkahead as db
+from linkaheadadvancedtools.models.parser import (parse_model_from_json_schema,
JsonSchemaDefinitionError)
FILEPATH = os.path.join(os.path.dirname(
diff --git a/unittests/test_read_md_header.py b/unittests/test_read_md_header.py
index bf892353..55fbeff3 100644
--- a/unittests/test_read_md_header.py
+++ b/unittests/test_read_md_header.py
@@ -25,8 +25,8 @@ import unittest
from copy import deepcopy
from tempfile import NamedTemporaryFile
-import caosdb as db
-from caosadvancedtools.read_md_header import get_header
+import linkahead as db
+from linkaheadadvancedtools.read_md_header import get_header
def to_file(string):
diff --git a/unittests/test_result_table_cfood.py b/unittests/test_result_table_cfood.py
index 9fa2d501..be141d4e 100644
--- a/unittests/test_result_table_cfood.py
+++ b/unittests/test_result_table_cfood.py
@@ -32,8 +32,8 @@ import os
import re
import unittest
-import caosdb as db
-from caosadvancedtools.scifolder.result_table_cfood import ResultTableCFood
+import linkahead as db
+from linkaheadadvancedtools.scifolder.result_table_cfood import ResultTableCFood
class CFoodTest(unittest.TestCase):
diff --git a/unittests/test_scifolder_utils.py b/unittests/test_scifolder_utils.py
index 30e211d9..8b4cb32b 100644
--- a/unittests/test_scifolder_utils.py
+++ b/unittests/test_scifolder_utils.py
@@ -20,7 +20,7 @@
import os
import unittest
-from caosadvancedtools.scifolder.utils import get_xls_header
+from linkaheadadvancedtools.scifolder.utils import get_xls_header
class XLSTest(unittest.TestCase):
diff --git a/unittests/test_sss_helper.py b/unittests/test_sss_helper.py
index 71408fa6..ea1cf824 100644
--- a/unittests/test_sss_helper.py
+++ b/unittests/test_sss_helper.py
@@ -3,13 +3,13 @@ from email import message_from_file, policy
from os import listdir, remove
from os.path import abspath, dirname, exists, isfile, join
-import caosdb as db
-from caosadvancedtools.serverside.helper import (NameCollector, get_data,
+import linkahead as db
+from linkaheadadvancedtools.serverside.helper import (NameCollector, get_data,
get_file_via_download,
init_data_model,
parse_arguments, send_mail)
from caosdb import RecordType, configure_connection, get_config
-from caosdb.connection.mockup import MockUpResponse, MockUpServerConnection
+from linkahead.connection.mockup import MockUpResponse, MockUpServerConnection
from pytest import mark, raises
diff --git a/unittests/test_structure_mapping.py b/unittests/test_structure_mapping.py
index 4cb88097..95d9688b 100644
--- a/unittests/test_structure_mapping.py
+++ b/unittests/test_structure_mapping.py
@@ -22,10 +22,10 @@
import unittest
from os import name
-import caosdb as db
-from caosadvancedtools.structure_mapping import (EntityMapping,
+import linkahead as db
+from linkaheadadvancedtools.structure_mapping import (EntityMapping,
collect_existing_structure)
-from caosdb.common import datatype
+from linkahead.common import datatype
class structureMappingTest(unittest.TestCase):
diff --git a/unittests/test_suppressKnown.py b/unittests/test_suppressKnown.py
index d2008e27..0b8b4b2d 100644
--- a/unittests/test_suppressKnown.py
+++ b/unittests/test_suppressKnown.py
@@ -27,7 +27,7 @@ import os
import unittest
from tempfile import NamedTemporaryFile
-from caosadvancedtools.suppressKnown import SuppressKnown
+from linkaheadadvancedtools.suppressKnown import SuppressKnown
class Record(object):
diff --git a/unittests/test_table_converter.py b/unittests/test_table_converter.py
index 13239349..907408d5 100644
--- a/unittests/test_table_converter.py
+++ b/unittests/test_table_converter.py
@@ -24,11 +24,11 @@ import os
import unittest
from tempfile import NamedTemporaryFile
-import caosdb as db
+import linkahead as db
import pandas as pd
-from caosdb.apiutils import compare_entities
+from linkahead.apiutils import compare_entities
-from caosadvancedtools.table_converter import (from_table, from_tsv, to_table,
+from linkaheadadvancedtools.table_converter import (from_table, from_tsv, to_table,
to_tsv)
TEST_TABLE = os.path.join(os.path.dirname(os.path.realpath(__file__)),
diff --git a/unittests/test_table_importer.py b/unittests/test_table_importer.py
index 0b3f0d7c..1aec7d1a 100644
--- a/unittests/test_table_importer.py
+++ b/unittests/test_table_importer.py
@@ -26,8 +26,8 @@ from tempfile import NamedTemporaryFile
import numpy as np
import pandas as pd
import pytest
-from caosadvancedtools.datainconsistency import DataInconsistencyError
-from caosadvancedtools.table_importer import (CSVImporter, TableImporter,
+from linkaheadadvancedtools.datainconsistency import DataInconsistencyError
+from linkaheadadvancedtools.table_importer import (CSVImporter, TableImporter,
TSVImporter, XLSImporter,
assure_name_format,
check_reference_field,
diff --git a/unittests/test_update_cache.py b/unittests/test_update_cache.py
index bee8a190..9e50e1f0 100644
--- a/unittests/test_update_cache.py
+++ b/unittests/test_update_cache.py
@@ -26,8 +26,8 @@ import unittest
from copy import deepcopy
from tempfile import NamedTemporaryFile
-import caosdb as db
-from caosadvancedtools.cache import UpdateCache, get_pretty_xml
+import linkahead as db
+from linkaheadadvancedtools.cache import UpdateCache, get_pretty_xml
class CacheTest(unittest.TestCase):
diff --git a/unittests/test_utils.py b/unittests/test_utils.py
index 35487c07..b831865c 100644
--- a/unittests/test_utils.py
+++ b/unittests/test_utils.py
@@ -24,12 +24,12 @@ import logging
import unittest
from tempfile import NamedTemporaryFile
-import caosdb as db
-from caosadvancedtools.utils import (check_win_path, get_referenced_files,
+import linkahead as db
+from linkaheadadvancedtools.utils import (check_win_path, get_referenced_files,
string_to_person, create_entity_link)
from caosdb import RecordType, configure_connection, get_config
-from caosdb.connection.mockup import MockUpResponse, MockUpServerConnection
-from caosdb.exceptions import TransactionError
+from linkahead.connection.mockup import MockUpResponse, MockUpServerConnection
+from linkahead.exceptions import TransactionError
class BaseMockUpTest(unittest.TestCase):
diff --git a/unittests/test_yaml_model_parser.py b/unittests/test_yaml_model_parser.py
index 6cdea792..23a3f823 100644
--- a/unittests/test_yaml_model_parser.py
+++ b/unittests/test_yaml_model_parser.py
@@ -3,8 +3,8 @@ from datetime import date
from tempfile import NamedTemporaryFile
from pytest import deprecated_call, raises
-import caosdb as db
-from caosadvancedtools.models.parser import (TwiceDefinedException,
+import linkahead as db
+from linkaheadadvancedtools.models.parser import (TwiceDefinedException,
YamlDefinitionError,
parse_model_from_string,
parse_model_from_yaml)
--
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