From 3c4042a48585ad4dc4277d73f0ea1e73c1fc0437 Mon Sep 17 00:00:00 2001
From: "i.nueske" <i.nueske@indiscale.com>
Date: Mon, 16 Dec 2024 17:38:17 +0100
Subject: [PATCH] MNT: Fix assorted simple pylint errors
---
src/caosadvancedtools/loadFiles.py | 4 +---
src/caosadvancedtools/pandoc_header_tools.py | 2 --
src/caosadvancedtools/suppressKnown.py | 1 +
src/caosadvancedtools/utils.py | 4 ++--
4 files changed, 4 insertions(+), 7 deletions(-)
diff --git a/src/caosadvancedtools/loadFiles.py b/src/caosadvancedtools/loadFiles.py
index 56d50e4d..f29bdd9e 100755
--- a/src/caosadvancedtools/loadFiles.py
+++ b/src/caosadvancedtools/loadFiles.py
@@ -375,9 +375,7 @@ exclude is given preference over include.
logger.addHandler(logging.StreamHandler(stream=sys.stdout))
logger.setLevel(logging.INFO)
- con = db.get_connection()
- con.timeout = float(args.timeout)
- con._login()
+ db.configure_connection(timeout=float(args.timeout))
loadpath(
path=args.path,
diff --git a/src/caosadvancedtools/pandoc_header_tools.py b/src/caosadvancedtools/pandoc_header_tools.py
index fec27cdb..a0191e5a 100644
--- a/src/caosadvancedtools/pandoc_header_tools.py
+++ b/src/caosadvancedtools/pandoc_header_tools.py
@@ -107,12 +107,10 @@ it is not at the beginning, it must be preceded by a blank line.
textlines = f.readlines()
state = 0
- found_0 = -1
found_1 = -1
found_2 = -1
for i, line in enumerate(textlines):
if len(line) == 1 and state in {-1, 0}:
- found_0 = i
state = 0
continue
if line.rstrip() == "---" and state == 0:
diff --git a/src/caosadvancedtools/suppressKnown.py b/src/caosadvancedtools/suppressKnown.py
index 1b31de7e..aada4ef6 100644
--- a/src/caosadvancedtools/suppressKnown.py
+++ b/src/caosadvancedtools/suppressKnown.py
@@ -28,6 +28,7 @@ class SuppressKnown(logging.Filter):
"""
def __init__(self, db_file=None):
+ super().__init__()
if db_file:
self.db_file = db_file
else:
diff --git a/src/caosadvancedtools/utils.py b/src/caosadvancedtools/utils.py
index 43ecb3f2..f64900c0 100644
--- a/src/caosadvancedtools/utils.py
+++ b/src/caosadvancedtools/utils.py
@@ -27,7 +27,7 @@ import logging
import os
import linkahead as db
-from linkahead.exceptions import TransactionError
+from linkahead.exceptions import TransactionError, BadQueryError
logger = logging.getLogger(__name__)
@@ -232,7 +232,7 @@ def find_records_that_reference_ids(referenced_ids, rt="", step_size=50):
[str(el) for el in subset]))
exps = db.execute_query(q_string)
record_ids.update([exp.id for exp in exps])
- except Exception as e:
+ except (TransactionError, BadQueryError) as e:
print(e)
index += step_size
--
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