diff --git a/src/caosadvancedtools/collect_datamodel.py b/src/caosadvancedtools/collect_datamodel.py
index f485aec67616d63998f9e89da800359dc8dc0bb0..bb69a03d4475c8af21f69fd5d9ffd3ac4adb1f2f 100644
--- a/src/caosadvancedtools/collect_datamodel.py
+++ b/src/caosadvancedtools/collect_datamodel.py
@@ -62,9 +62,9 @@ def store(directory, xml=False):
rts, ps = get_dm()
os.makedirs(directory, exist_ok=True)
- with open(os.path.join(directory, "recordtypes.txt"), "w") as fi:
+ with open(os.path.join(directory, "recordtypes.txt"), "w", encoding="utf-8") as fi:
fi.write(",".join([el[1] for el in rts]))
- with open(os.path.join(directory, "properties.txt"), "w") as fi:
+ with open(os.path.join(directory, "properties.txt"), "w", encoding="utf-8") as fi:
fi.write(",".join([el[1] for el in ps]))
if xml:
@@ -75,10 +75,10 @@ def store(directory, xml=False):
def load_dm(directory):
- with open(os.path.join(directory, "recordtypes.txt"), "r") as fi:
+ with open(os.path.join(directory, "recordtypes.txt"), "r", encoding="utf-8") as fi:
text = fi.read()
rts = [el.strip() for el in text.split(",")]
- with open(os.path.join(directory, "properties.txt"), "r") as fi:
+ with open(os.path.join(directory, "properties.txt"), "r", encoding="utf-8") as fi:
text = fi.read()
ps = [el.strip() for el in text.split(",")]
diff --git a/src/caosadvancedtools/crawler.py b/src/caosadvancedtools/crawler.py
index e5bdd14271c948e83fc66a3308ff7167db0fe696..9b960d5755bed693f18a381033e94aa3d6503df1 100644
--- a/src/caosadvancedtools/crawler.py
+++ b/src/caosadvancedtools/crawler.py
@@ -599,7 +599,7 @@ ____________________\n""".format(i+1, len(pending_changes)) + str(el[3]))
randname = os.path.basename(os.path.abspath(directory))
filepath = os.path.abspath(os.path.join(directory, filename))
filename = os.path.join(randname, filename)
- with open(filepath, "w") as f:
+ with open(filepath, "w", encoding="utf-8") as f:
f.write(form)
return filename
diff --git a/src/caosadvancedtools/export_related.py b/src/caosadvancedtools/export_related.py
index 72484a3075fa34805af54b7b0c36ff82fbcf743e..d25381f9e4f35eabb3a17462d59ac62153d32b37 100755
--- a/src/caosadvancedtools/export_related.py
+++ b/src/caosadvancedtools/export_related.py
@@ -128,7 +128,7 @@ def export(cont, directory="."):
xml = etree.tounicode(cont.to_xml(
local_serialization=True), pretty_print=True)
- with open(os.path.join(directory, "linkahead_data.xml"), "w") as fi:
+ with open(os.path.join(directory, "linkahead_data.xml"), "w", encoding="utf-8") as fi:
fi.write(xml)
diff --git a/src/caosadvancedtools/import_from_xml.py b/src/caosadvancedtools/import_from_xml.py
index 23ea79c113a1269165ab9ddc1284182472f82266..4f9bba991affe449508c7b641003d2e44f93df55 100755
--- a/src/caosadvancedtools/import_from_xml.py
+++ b/src/caosadvancedtools/import_from_xml.py
@@ -39,7 +39,7 @@ from caosadvancedtools.models.data_model import DataModel
def create_dummy_file(text="Please ask the administrator for this file."):
tmpfile = NamedTemporaryFile(delete=False)
tmpfile.close()
- with open(tmpfile.name, "w") as tm:
+ with open(tmpfile.name, "w", encoding="utf-8") as tm:
tm.write(text)
return tmpfile.name
@@ -51,7 +51,7 @@ def import_xml(filename, rerun=False, interactive=True):
rerun: boolean; if true, files are not inserted as paths would conflict.
"""
cont = db.Container()
- with open(filename) as fi:
+ with open(filename, encoding="utf-8") as fi:
cont = cont.from_xml(fi.read())
tmpfile = create_dummy_file()
diff --git a/src/caosadvancedtools/loadFiles.py b/src/caosadvancedtools/loadFiles.py
index c9258afaff88b53f843d684a4d8b18a4baf55688..8e3b466fa20fd20a981ed899b3be5ba3282517fc 100755
--- a/src/caosadvancedtools/loadFiles.py
+++ b/src/caosadvancedtools/loadFiles.py
@@ -90,9 +90,9 @@ def combine_ignore_files(caosdbignore: str, localignore: str, dirname=None) -> s
tmp = NamedTemporaryFile(delete=False, mode="w",
dir=dirname, prefix=".caosdbignore")
- with open(caosdbignore, "r") as base:
+ with open(caosdbignore, "r", encoding="utf-8") as base:
tmp.write(base.read())
- with open(localignore, "r") as local:
+ with open(localignore, "r", encoding="utf-8") as local:
tmp.write(local.read())
tmp.close()
return tmp.name
diff --git a/src/caosadvancedtools/models/parser.py b/src/caosadvancedtools/models/parser.py
index 7b91891f3b180e4bc0cd327cbf609cd11d454e52..f6e142db5c1fa9aefaceb033dc4725fcfeee5d4a 100644
--- a/src/caosadvancedtools/models/parser.py
+++ b/src/caosadvancedtools/models/parser.py
@@ -247,7 +247,7 @@ debug : bool, optional
out : data_model.DataModel
The created DataModel
"""
- with open(filename, 'r') as outfile:
+ with open(filename, 'r', encoding="utf-8") as outfile:
ymlmodel = yaml.load(outfile, Loader=SafeLineLoader)
return self._create_model_from_dict(ymlmodel, existing_model=existing_model)
@@ -731,7 +731,7 @@ class JsonSchemaParser(Parser):
# @author Florian Spreckelsen
# @date 2022-02-17
# @review Timm Fitschen 2023-05-25
- with open(filename, 'r') as schema_file:
+ with open(filename, 'r', encoding="utf-8") as schema_file:
model_dict = jsonref.load(schema_file)
return self._create_model_from_dict(model_dict, top_level_recordtype=top_level_recordtype)
diff --git a/src/caosadvancedtools/pandoc_header_tools.py b/src/caosadvancedtools/pandoc_header_tools.py
index bf9b25a9e4ad9a5e9190c41cf00fc4bed6808b4c..a6879565dbbe80a7bb22c041ff56f59f04b623ec 100644
--- a/src/caosadvancedtools/pandoc_header_tools.py
+++ b/src/caosadvancedtools/pandoc_header_tools.py
@@ -103,7 +103,7 @@ it is not at the beginning, it must be preceded by a blank line.
if not os.path.exists(filename):
raise MetadataFileMissing(filename)
- with open(filename) as f:
+ with open(filename, encoding="utf-8") as f:
textlines = f.readlines()
state = 0
@@ -168,7 +168,7 @@ def save_header(filename, header_data):
if os.path.isdir(filename):
filename = os.path.join(filename, "README.md")
- with open(filename) as f:
+ with open(filename, encoding="utf-8") as f:
textlines = f.readlines()
while textlines[header_data[0]] != "...\n":
@@ -181,7 +181,7 @@ def save_header(filename, header_data):
default_flow_style=False,
allow_unicode=True))
- with open(filename, "w") as f:
+ with open(filename, "w", encoding="utf-8") as f:
f.writelines(textlines)
@@ -199,7 +199,7 @@ def add_header(filename, header_dict=None):
filename = os.path.join(filename, "README.md")
if os.path.exists(filename):
- with open(filename) as f:
+ with open(filename, encoding="utf-8") as f:
textlines = f.readlines()
else:
textlines = ""
@@ -211,7 +211,7 @@ def add_header(filename, header_dict=None):
default_flow_style=False,
allow_unicode=True) + "...\n"
- with open(filename, "w") as f:
+ with open(filename, "w", encoding="utf-8") as f:
f.write(localheader)
f.writelines(textlines)
diff --git a/src/caosadvancedtools/table_export.py b/src/caosadvancedtools/table_export.py
index 00e644e436bde7e84043175bdeb050f07b969a3d..9b821394f633c29e58c05df2ee2d08f84e693f50 100644
--- a/src/caosadvancedtools/table_export.py
+++ b/src/caosadvancedtools/table_export.py
@@ -123,7 +123,7 @@ class BaseTableExporter(object):
self.export_dict = export_dict
else:
try:
- with open(export_dict) as tmp:
+ with open(export_dict, encoding="utf-8") as tmp:
self.export_dict = json.load(tmp)
except BaseException:
raise ValueError(