From 14aaf6bdc64371776a75d54edef0d1a681e25ef4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Henrik=20tom=20W=C3=B6rden?= <h.tomwoerden@indiscale.com>
Date: Fri, 29 Jan 2021 17:38:12 +0100
Subject: [PATCH] FIX: catch ValueError when reading include file
---
src/caosadvancedtools/scifolder/withreadme.py | 15 +++++++++++----
1 file changed, 11 insertions(+), 4 deletions(-)
diff --git a/src/caosadvancedtools/scifolder/withreadme.py b/src/caosadvancedtools/scifolder/withreadme.py
index c36fb736..8a63e1f6 100644
--- a/src/caosadvancedtools/scifolder/withreadme.py
+++ b/src/caosadvancedtools/scifolder/withreadme.py
@@ -261,10 +261,17 @@ class WithREADME(object):
for item in self.header[field.key]:
if INCLUDE.key in item:
- included.extend(
- get_entity_ids_from_include_file(
- os.path.dirname(self.crawled_path),
- item[INCLUDE.key]))
+ try:
+ included.extend(
+ get_entity_ids_from_include_file(
+ os.path.dirname(self.crawled_path),
+ item[INCLUDE.key]))
+ except ValueError:
+ al = logging.getLogger("caosadvancedtools")
+ al.warning("The include file cannot be read. Please "
+ "make sure, it contains an 'ID' column."
+ " The file is ignored."
+ "\n{}".format(item[INCLUDE.key]))
assure_object_is_in_list(included,
record,
--
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